Wall clock time and date at job start Wed Apr 1 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48500 * 109.46860 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47256 * 299.99915 * 3 2 1 6 6 H 1.48503 * 109.46870 * 60.00176 * 3 2 1 7 7 C 1.38948 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99727 * 200.79397 * 7 2 1 9 9 N 1.37098 * 120.00054 * 20.80503 * 7 2 1 10 10 C 1.46503 * 120.00180 * 16.59661 * 9 7 2 11 11 C 1.50700 * 109.47115 * 264.08916 * 10 9 7 12 12 O 1.20832 * 119.99629 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00121 * 180.02562 * 11 10 9 14 14 C 1.34775 * 119.99698 * 196.59761 * 9 7 2 15 15 O 1.21292 * 119.99760 * 179.97438 * 14 9 7 16 16 C 1.50701 * 120.00265 * 359.97438 * 14 9 7 17 17 N 1.46495 * 109.47240 * 179.97438 * 16 14 9 18 18 C 1.34773 * 120.00303 * 180.02562 * 17 16 14 19 19 O 1.21649 * 119.99859 * 359.97438 * 18 17 16 20 20 C 1.47060 * 120.00489 * 180.02562 * 18 17 16 21 21 C 1.35863 * 125.43107 * 180.02562 * 20 18 17 22 22 C 1.41590 * 107.72431 * 179.97438 * 21 20 18 23 23 C 1.40106 * 133.37326 * 179.97438 * 22 21 20 24 24 C 1.36437 * 119.82580 * 180.02562 * 23 22 21 25 25 C 1.38942 * 120.61793 * 359.96894 * 24 23 22 26 26 C 1.37671 * 120.64736 * 0.04096 * 25 24 23 27 27 C 1.39229 * 119.80897 * 359.97438 * 26 25 24 28 28 N 1.37479 * 133.17881 * 179.97438 * 27 26 25 29 29 H 0.96996 * 125.60877 * 0.02685 * 28 27 26 30 30 H 0.97004 * 120.00203 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46922 * 24.08657 * 10 9 7 32 32 H 1.08993 * 109.46943 * 144.09101 * 10 9 7 33 33 H 0.96698 * 117.00032 * 179.97438 * 13 11 10 34 34 H 1.08999 * 109.46914 * 59.99598 * 16 14 9 35 35 H 1.09000 * 109.46730 * 300.00050 * 16 14 9 36 36 H 0.97000 * 119.99801 * 359.97438 * 17 16 14 37 37 H 1.08005 * 126.13792 * 359.94278 * 21 20 18 38 38 H 1.08003 * 120.08828 * 0.05878 * 23 22 21 39 39 H 1.08006 * 119.68909 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.67290 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.09330 * 180.25272 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0361 -1.2336 0.3326 9 7 1.3904 -2.3521 -0.4207 10 6 0.1527 -2.2741 -1.2007 11 6 -1.0313 -2.4249 -0.2807 12 8 -0.8589 -2.5811 0.9050 13 8 -2.2772 -2.3858 -0.7784 14 6 1.9210 -3.5532 -0.1171 15 8 1.3736 -4.5696 -0.4893 16 6 3.1944 -3.6336 0.6849 17 7 3.5607 -5.0385 0.8802 18 6 4.6718 -5.3550 1.5742 19 8 5.3708 -4.4740 2.0381 20 6 5.0399 -6.7653 1.7698 21 6 6.1306 -7.2078 2.4482 22 6 6.1203 -8.6230 2.4049 23 6 6.9743 -9.6076 2.9190 24 6 6.6947 -10.9262 2.7074 25 6 5.5688 -11.3040 1.9863 26 6 4.7146 -10.3553 1.4709 27 6 4.9786 -9.0033 1.6731 28 7 4.3314 -7.8513 1.2934 29 1 3.5119 -7.8082 0.7763 30 1 -0.4851 0.8401 -0.0004 31 1 0.1009 -1.3087 -1.7042 32 1 0.1402 -3.0722 -1.9429 33 1 -3.0046 -2.4875 -0.1495 34 1 3.0434 -3.1596 1.6547 35 1 3.9935 -3.1202 0.1501 36 1 3.0032 -5.7409 0.5106 37 1 6.8727 -6.5908 2.9331 38 1 7.8513 -9.3236 3.4817 39 1 7.3548 -11.6833 3.1044 40 1 5.3619 -12.3521 1.8283 41 1 3.8397 -10.6591 0.9152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:51 Heat of formation + Delta-G solvation = -110.031151 kcal Electronic energy + Delta-G solvation = -29086.336380 eV Core-core repulsion = 24738.363581 eV Total energy + Delta-G solvation = -4347.972799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.61054 -41.40750 -40.62033 -39.81631 -37.70158 -37.20380 -36.51272 -35.63889 -33.62454 -33.14579 -31.23224 -30.29419 -29.95338 -28.22872 -26.66297 -24.70416 -23.14171 -22.78966 -22.13064 -21.40359 -21.17122 -19.93087 -18.98087 -18.70512 -18.33880 -17.69018 -17.52222 -17.13499 -16.80296 -16.60458 -16.24441 -16.21481 -16.00176 -15.80361 -15.43450 -15.04830 -15.04236 -14.76392 -14.49074 -14.23853 -13.97553 -13.84731 -13.44859 -13.39014 -13.33090 -12.70441 -12.61037 -12.55607 -12.52433 -12.19575 -12.04624 -11.82186 -11.62925 -11.49885 -11.05001 -10.91978 -10.74822 -10.40546 -10.01149 -9.24975 -8.79129 -8.49002 -6.04666 -0.26723 0.68062 1.04828 1.32800 1.49030 1.60630 1.64041 1.73381 1.77260 1.93534 2.18980 2.25353 2.48281 2.81362 2.96729 3.06260 3.58094 3.74023 3.96141 4.10257 4.21472 4.33916 4.37500 4.41129 4.46024 4.50482 4.58111 4.67618 4.80439 4.80795 4.93193 5.02314 5.14853 5.37431 5.47316 5.55107 5.55690 5.67082 5.70127 5.89107 6.11825 6.20173 6.28094 6.42662 6.88294 6.94470 7.25565 7.37490 7.67542 8.58168 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002447 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.891592 B =11441.048654 C =12767.342437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.004 3.996 3 Si 0.994 3.006 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.288 1.288 7 C -0.362 4.362 8 H 0.116 0.884 9 N -0.427 5.427 10 C 0.152 3.848 11 C 0.502 3.498 12 O -0.551 6.551 13 O -0.521 6.521 14 C 0.452 3.548 15 O -0.620 6.620 16 C 0.131 3.869 17 N -0.704 5.704 18 C 0.583 3.417 19 O -0.559 6.559 20 C 0.003 3.997 21 C -0.110 4.110 22 C -0.144 4.144 23 C -0.070 4.070 24 C -0.150 4.150 25 C -0.082 4.082 26 C -0.145 4.145 27 C 0.101 3.899 28 N -0.573 5.573 29 H 0.426 0.574 30 H 0.276 0.724 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.413 0.587 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.409 0.591 37 H 0.159 0.841 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.599 -15.965 0.000 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.200 4.200 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.214 1.214 7 C -0.489 4.489 8 H 0.134 0.866 9 N -0.144 5.144 10 C 0.026 3.974 11 C 0.345 3.655 12 O -0.440 6.440 13 O -0.333 6.333 14 C 0.241 3.759 15 O -0.509 6.509 16 C 0.004 3.996 17 N -0.357 5.357 18 C 0.371 3.629 19 O -0.438 6.438 20 C -0.107 4.107 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.088 4.088 24 C -0.168 4.168 25 C -0.102 4.102 26 C -0.165 4.165 27 C -0.010 4.010 28 N -0.178 5.178 29 H 0.266 0.734 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.273 0.727 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.247 0.753 37 H 0.176 0.824 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.857 -15.540 0.073 17.413 hybrid contribution -1.379 1.099 0.219 1.777 sum 6.479 -14.441 0.291 15.830 Atomic orbital electron populations 1.69917 1.07463 1.29045 1.46279 1.26079 0.95950 1.02953 0.94989 0.84851 0.79015 0.76698 0.77666 1.18107 1.19540 1.21439 1.20103 0.97878 0.84566 1.46311 0.86635 1.43514 1.20053 1.05465 1.45410 1.20566 0.80496 1.04738 0.91575 1.23707 0.84191 0.69235 0.88380 1.90554 1.86459 1.47453 1.19507 1.84442 1.16857 1.85591 1.46414 1.20334 0.88575 0.83283 0.83671 1.90479 1.65829 1.35087 1.59511 1.20731 0.95428 0.82671 1.00724 1.45601 1.26114 1.08821 1.55124 1.17423 0.80349 0.87185 0.77958 1.90817 1.52839 1.48916 1.51192 1.19835 0.97778 0.85938 1.07136 1.21086 0.97639 0.93861 1.01170 1.18455 0.98175 0.93214 1.05001 1.20716 0.98250 0.92035 0.97842 1.21042 0.98870 0.95844 1.01075 1.21333 0.93342 1.00085 0.95404 1.20438 1.02891 0.88102 1.05082 1.18737 0.94148 0.88472 0.99628 1.41952 1.24448 1.03499 1.47877 0.73412 0.91388 0.85705 0.88388 0.72746 0.89699 0.88133 0.75279 0.82351 0.84066 0.83011 0.82500 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.90 9.24 21.66 0.20 -43.70 16 2 C 0.00 0.17 4.90 84.93 0.42 0.58 16 3 Si 0.99 37.78 29.60 68.60 2.03 39.81 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.36 -17.30 9.15 84.04 0.77 -16.54 16 8 H 0.12 5.23 6.55 -2.91 -0.02 5.21 16 9 N -0.43 -20.31 2.18 -639.60 -1.39 -21.71 16 10 C 0.15 6.82 5.14 85.63 0.44 7.26 16 11 C 0.50 23.30 6.50 71.24 0.46 23.77 16 12 O -0.55 -29.71 16.80 21.95 0.37 -29.34 16 13 O -0.52 -19.31 13.42 -51.36 -0.69 -20.00 16 14 C 0.45 20.60 7.49 87.66 0.66 21.26 16 15 O -0.62 -29.32 15.35 -3.07 -0.05 -29.37 16 16 C 0.13 5.27 4.60 85.63 0.39 5.66 16 17 N -0.70 -24.75 5.52 -470.47 -2.60 -27.35 16 18 C 0.58 20.37 7.80 86.56 0.68 21.04 16 19 O -0.56 -22.71 16.84 -4.19 -0.07 -22.78 16 20 C 0.00 0.08 6.97 39.91 0.28 0.36 16 21 C -0.11 -3.01 10.53 22.55 0.24 -2.77 16 22 C -0.14 -3.46 6.16 -21.36 -0.13 -3.59 16 23 C -0.07 -1.26 10.06 22.30 0.22 -1.04 16 24 C -0.15 -2.10 9.96 22.02 0.22 -1.88 16 25 C -0.08 -1.13 10.01 22.30 0.22 -0.90 16 26 C -0.14 -2.53 10.08 22.37 0.23 -2.30 16 27 C 0.10 2.33 7.25 39.13 0.28 2.61 16 28 N -0.57 -14.00 6.07 -177.19 -1.08 -15.07 16 29 H 0.43 8.89 8.12 -92.71 -0.75 8.14 16 30 H 0.28 12.95 8.31 -92.70 -0.77 12.18 16 31 H 0.13 5.60 6.35 -2.39 -0.02 5.59 16 32 H 0.10 4.05 7.61 -2.39 -0.02 4.03 16 33 H 0.41 11.56 9.10 -74.06 -0.67 10.89 16 34 H 0.09 3.64 8.10 -2.39 -0.02 3.62 16 35 H 0.10 3.86 7.70 -2.39 -0.02 3.84 16 36 H 0.41 13.44 6.49 -92.71 -0.60 12.84 16 37 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -69.21 361.55 1.21 -68.00 By element: Atomic # 1 Polarization: 48.87 SS G_CDS: -0.89 Total: 47.99 kcal Atomic # 6 Polarization: 48.14 SS G_CDS: 5.37 Total: 53.51 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.87 Total: -107.83 kcal Atomic # 8 Polarization: -101.05 SS G_CDS: -0.44 Total: -101.49 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -69.21 1.21 -68.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.031 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds