Wall clock time and date at job start Wed Apr 1 2020 04:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47275 * 266.22186 * 3 2 1 5 5 H 1.48503 * 109.46777 * 26.22091 * 3 2 1 6 6 H 1.48498 * 109.47123 * 146.21809 * 3 2 1 7 7 C 1.40295 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00000 * 349.28352 * 7 2 1 9 9 C 1.40869 * 119.99719 * 169.29028 * 7 2 1 10 10 C 1.40704 * 120.33073 * 322.87029 * 9 7 2 11 11 C 1.37599 * 119.88649 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.58123 * 359.97438 * 11 10 9 13 13 C 1.38201 * 120.68740 * 0.02562 * 12 11 10 14 14 C 1.39291 * 120.07945 * 359.97438 * 13 12 11 15 15 C 1.47289 * 120.28395 * 180.02562 * 14 13 12 16 16 O 1.21532 * 120.00113 * 174.08004 * 15 14 13 17 17 O 1.34812 * 120.00127 * 354.06695 * 15 14 13 18 18 C 1.45197 * 117.00145 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46991 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.46814 * 179.97438 * 19 18 17 21 21 C 1.35348 * 126.74865 * 124.71476 * 20 19 18 22 22 N 1.35318 * 106.17727 * 179.85439 * 21 20 19 23 23 C 1.46499 * 125.86920 * 180.18946 * 22 21 20 24 24 C 1.50701 * 109.46939 * 125.29099 * 23 22 21 25 25 O 1.20819 * 120.00461 * 359.97438 * 24 23 22 26 26 O 1.34234 * 119.99482 * 179.97438 * 24 23 22 27 27 N 1.28718 * 108.25679 * 0.40936 * 22 21 20 28 28 N 1.28634 * 110.17946 * 359.74375 * 27 22 21 29 29 H 0.96998 * 120.00008 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.05827 * 359.96573 * 10 9 7 31 31 H 1.08004 * 119.70454 * 180.02562 * 11 10 9 32 32 H 1.08009 * 119.65417 * 180.02562 * 12 11 10 33 33 H 1.07989 * 119.95805 * 179.72321 * 13 12 11 34 34 H 1.09008 * 109.47092 * 300.00434 * 18 17 15 35 35 H 1.09001 * 109.47219 * 60.00000 * 18 17 15 36 36 H 1.08995 * 109.47017 * 300.00002 * 19 18 17 37 37 H 1.09004 * 109.46923 * 60.00279 * 19 18 17 38 38 H 1.08007 * 126.91259 * 359.97438 * 21 20 19 39 39 H 1.08999 * 109.46920 * 245.28537 * 23 22 21 40 40 H 1.08998 * 109.47182 * 5.28986 * 23 22 21 41 41 H 0.96704 * 116.99231 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.5677 2.0003 -1.3970 5 1 1.4000 2.6744 0.6186 6 1 3.4955 1.4645 0.7785 7 6 2.0076 -1.2150 0.0005 8 1 1.4818 -2.1420 0.1749 9 6 3.3979 -1.2257 -0.2262 10 6 3.9739 -0.3355 -1.1512 11 6 5.3330 -0.3535 -1.3651 12 6 6.1450 -1.2434 -0.6750 13 6 5.6046 -2.1281 0.2389 14 6 4.2322 -2.1341 0.4773 15 6 3.6516 -3.0747 1.4507 16 8 2.4720 -3.0042 1.7347 17 8 4.4285 -4.0140 2.0265 18 6 3.7889 -4.9071 2.9759 19 6 4.8212 -5.8963 3.5208 20 6 4.1574 -6.8229 4.5066 21 6 4.1460 -8.1757 4.4653 22 7 3.4394 -8.5799 5.5462 23 6 3.1639 -9.9691 5.9212 24 6 3.6267 -10.2089 7.3352 25 8 4.1349 -9.3117 7.9650 26 8 3.4742 -11.4193 7.8950 27 7 3.0470 -7.5340 6.1857 28 7 3.4588 -6.4701 5.5914 29 1 -0.4850 0.8400 0.0004 30 1 3.3502 0.3606 -1.6925 31 1 5.7721 0.3314 -2.0755 32 1 7.2101 -1.2443 -0.8543 33 1 6.2465 -2.8183 0.7658 34 1 3.3736 -4.3255 3.7991 35 1 2.9885 -5.4542 2.4777 36 1 5.2367 -6.4778 2.6979 37 1 5.6212 -5.3488 4.0192 38 1 4.6095 -8.8059 3.7206 39 1 2.0927 -10.1583 5.8525 40 1 3.6954 -10.6399 5.2462 41 1 3.7867 -11.5250 8.8041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833069119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:29 Heat of formation + Delta-G solvation = -47.149756 kcal Electronic energy + Delta-G solvation = -28175.917798 eV Core-core repulsion = 23830.671740 eV Total energy + Delta-G solvation = -4345.246057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.59930 -40.82634 -39.39942 -37.52711 -36.92202 -35.73719 -35.10497 -33.69382 -33.17963 -30.53064 -30.41937 -29.92094 -28.94975 -25.59183 -24.24137 -23.68033 -22.39767 -22.01388 -21.30124 -20.76527 -19.62793 -18.93994 -17.90909 -17.55864 -17.31879 -16.84492 -16.68147 -16.10771 -15.87329 -15.68173 -15.23399 -15.03062 -14.20389 -14.09876 -13.94613 -13.77929 -13.63131 -13.46936 -13.27063 -12.69860 -12.48426 -12.23452 -12.12683 -11.91413 -11.78841 -11.47226 -11.44348 -11.28954 -10.91751 -10.90072 -10.76502 -10.47087 -10.41560 -10.23861 -9.86514 -9.79304 -9.38730 -9.25822 -8.87011 -7.87158 -7.65351 -6.97135 -4.55000 1.12745 1.41138 1.59182 1.99765 2.29575 2.39939 2.59947 3.07621 3.15790 3.27809 3.48636 3.79022 3.79592 3.93621 4.10864 4.19544 4.37465 4.53040 4.63802 4.79900 5.12106 5.23548 5.32615 5.44730 5.56632 5.75147 5.77023 5.92310 6.00600 6.04727 6.07854 6.12509 6.17446 6.43289 6.56408 6.75042 7.07940 7.11282 7.14943 7.35535 7.40035 7.63056 7.74331 7.99153 8.26577 8.39151 8.54609 8.74605 9.06032 10.01106 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.001959 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.122515 B =14287.606663 C =15177.061546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.245 1.245 7 C -0.397 4.397 8 H 0.115 0.885 9 C 0.118 3.882 10 C -0.231 4.231 11 C -0.059 4.059 12 C -0.257 4.257 13 C -0.020 4.020 14 C -0.237 4.237 15 C 0.503 3.497 16 O -0.501 6.501 17 O -0.371 6.371 18 C 0.076 3.924 19 C -0.031 4.031 20 C -0.007 4.007 21 C -0.042 4.042 22 N -0.299 5.299 23 C 0.131 3.869 24 C 0.466 3.534 25 O -0.480 6.480 26 O -0.511 6.511 27 N -0.059 5.059 28 N -0.251 5.251 29 H 0.289 0.711 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.197 0.803 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.218 -21.006 8.214 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.168 1.168 7 C -0.424 4.424 8 H 0.133 0.867 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.078 4.078 12 C -0.277 4.277 13 C -0.038 4.038 14 C -0.240 4.240 15 C 0.351 3.649 16 O -0.390 6.390 17 O -0.291 6.291 18 C 0.001 3.999 19 C -0.070 4.070 20 C -0.143 4.143 21 C -0.190 4.190 22 N -0.094 5.094 23 C 0.007 3.993 24 C 0.304 3.696 25 O -0.365 6.365 26 O -0.324 6.324 27 N -0.038 5.038 28 N -0.119 5.119 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.214 0.786 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 6.775 -20.119 9.358 23.201 hybrid contribution 0.859 -0.044 -0.161 0.875 sum 7.635 -20.164 9.197 23.440 Atomic orbital electron populations 1.69553 1.08252 1.30609 1.32778 1.26360 0.94897 1.01773 0.91176 0.86344 0.80762 0.79370 0.79734 1.19005 1.21462 1.16849 1.20012 0.90763 0.96408 1.35201 0.86693 1.17510 0.93048 0.89335 0.88746 1.21228 0.94872 1.05437 1.03402 1.20814 0.93700 0.96365 0.96890 1.20377 0.98107 1.03566 1.05609 1.20971 0.93629 0.95103 0.94143 1.18713 0.93156 1.06794 1.05319 1.21265 0.84635 0.79084 0.79878 1.90829 1.16743 1.70099 1.61336 1.86500 1.43931 1.43562 1.55066 1.22623 0.94514 0.90872 0.91936 1.19749 0.97289 0.94762 0.95182 1.21794 1.02810 0.92262 0.97464 1.23368 1.03826 0.96773 0.95082 1.46776 1.36781 1.07293 1.18504 1.21208 1.06439 0.79071 0.92549 1.22933 0.76622 0.80524 0.89474 1.90895 1.38772 1.43907 1.62906 1.84433 1.78145 1.33882 1.35954 1.78460 1.18924 0.87801 1.18662 1.75174 1.11529 1.18956 1.06227 0.90058 0.87176 0.88351 0.88233 0.87306 0.90889 0.91882 0.88918 0.88807 0.78616 0.83837 0.83211 0.71847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.36 13.92 55.57 0.77 -20.59 16 2 C 0.08 2.11 5.47 -17.29 -0.09 2.01 16 3 Si 0.91 20.82 24.61 -169.99 -4.18 16.64 16 4 H -0.26 -5.66 6.45 56.52 0.36 -5.29 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.25 -5.78 7.05 56.52 0.40 -5.38 16 7 C -0.40 -11.14 8.11 -37.81 -0.31 -11.45 16 8 H 0.12 3.54 6.30 -52.49 -0.33 3.21 16 9 C 0.12 3.05 5.01 -106.53 -0.53 2.52 16 10 C -0.23 -5.41 7.20 -38.88 -0.28 -5.69 16 11 C -0.06 -1.22 10.01 -39.59 -0.40 -1.62 16 12 C -0.26 -5.11 10.03 -39.37 -0.39 -5.50 16 13 C -0.02 -0.42 9.60 -39.20 -0.38 -0.80 16 14 C -0.24 -5.75 5.92 -104.39 -0.62 -6.37 16 15 C 0.50 12.05 7.84 34.41 0.27 12.32 16 16 O -0.50 -13.57 13.45 -19.29 -0.26 -13.83 16 17 O -0.37 -7.33 9.49 -40.80 -0.39 -7.71 16 18 C 0.08 1.27 5.45 37.16 0.20 1.47 16 19 C -0.03 -0.37 6.17 -27.88 -0.17 -0.54 16 20 C -0.01 -0.08 6.50 -82.78 -0.54 -0.62 16 21 C -0.04 -0.36 11.49 -17.04 -0.20 -0.56 16 22 N -0.30 -2.82 3.20 -62.44 -0.20 -3.01 16 23 C 0.13 0.52 7.05 -5.19 -0.04 0.48 16 24 C 0.47 2.90 8.34 36.01 0.30 3.20 16 25 O -0.48 -5.50 16.43 -18.74 -0.31 -5.81 16 26 O -0.51 -1.60 13.42 -39.27 -0.53 -2.13 16 27 N -0.06 -0.84 12.13 60.35 0.73 -0.11 16 28 N -0.25 -3.98 12.40 33.29 0.41 -3.56 16 29 H 0.29 7.01 8.29 -40.82 -0.34 6.67 16 30 H 0.11 2.53 4.95 -52.49 -0.26 2.27 16 31 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.11 1.99 7.61 -52.49 -0.40 1.59 16 34 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.20 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.15 -0.07 8.07 -51.93 -0.42 -0.49 16 41 H 0.42 -0.10 9.10 45.56 0.41 0.32 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -38.22 363.05 -5.20 -43.42 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.55 Total: 2.37 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.17 Total: -11.14 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 1.72 Total: -27.27 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.48 Total: -29.49 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.18 Total: 16.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.22 -5.20 -43.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.732 kcal (2) G-P(sol) polarization free energy of solvation -38.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds