Wall clock time and date at job start Wed Apr 1 2020 04:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47275 * 266.22186 * 3 2 1 5 5 H 1.48503 * 109.46777 * 26.22091 * 3 2 1 6 6 H 1.48498 * 109.47123 * 146.21809 * 3 2 1 7 7 C 1.40295 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00000 * 349.28352 * 7 2 1 9 9 C 1.40869 * 119.99719 * 169.29028 * 7 2 1 10 10 C 1.40704 * 120.33073 * 322.87029 * 9 7 2 11 11 C 1.37599 * 119.88649 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.58123 * 359.97438 * 11 10 9 13 13 C 1.38201 * 120.68740 * 0.02562 * 12 11 10 14 14 C 1.39291 * 120.07945 * 359.97438 * 13 12 11 15 15 C 1.47289 * 120.28395 * 180.02562 * 14 13 12 16 16 O 1.21532 * 120.00113 * 174.08004 * 15 14 13 17 17 O 1.34812 * 120.00127 * 354.06695 * 15 14 13 18 18 C 1.45197 * 117.00145 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46991 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.46814 * 179.97438 * 19 18 17 21 21 C 1.35348 * 126.74865 * 124.71476 * 20 19 18 22 22 N 1.35318 * 106.17727 * 179.85439 * 21 20 19 23 23 C 1.46499 * 125.86920 * 180.18946 * 22 21 20 24 24 C 1.50701 * 109.46939 * 125.29099 * 23 22 21 25 25 O 1.20819 * 120.00461 * 359.97438 * 24 23 22 26 26 O 1.34234 * 119.99482 * 179.97438 * 24 23 22 27 27 N 1.28718 * 108.25679 * 0.40936 * 22 21 20 28 28 N 1.28634 * 110.17946 * 359.74375 * 27 22 21 29 29 H 0.96998 * 120.00008 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.05827 * 359.96573 * 10 9 7 31 31 H 1.08004 * 119.70454 * 180.02562 * 11 10 9 32 32 H 1.08009 * 119.65417 * 180.02562 * 12 11 10 33 33 H 1.07989 * 119.95805 * 179.72321 * 13 12 11 34 34 H 1.09008 * 109.47092 * 300.00434 * 18 17 15 35 35 H 1.09001 * 109.47219 * 60.00000 * 18 17 15 36 36 H 1.08995 * 109.47017 * 300.00002 * 19 18 17 37 37 H 1.09004 * 109.46923 * 60.00279 * 19 18 17 38 38 H 1.08007 * 126.91259 * 359.97438 * 21 20 19 39 39 H 1.08999 * 109.46920 * 245.28537 * 23 22 21 40 40 H 1.08998 * 109.47182 * 5.28986 * 23 22 21 41 41 H 0.96704 * 116.99231 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.5677 2.0003 -1.3970 5 1 1.4000 2.6744 0.6186 6 1 3.4955 1.4645 0.7785 7 6 2.0076 -1.2150 0.0005 8 1 1.4818 -2.1420 0.1749 9 6 3.3979 -1.2257 -0.2262 10 6 3.9739 -0.3355 -1.1512 11 6 5.3330 -0.3535 -1.3651 12 6 6.1450 -1.2434 -0.6750 13 6 5.6046 -2.1281 0.2389 14 6 4.2322 -2.1341 0.4773 15 6 3.6516 -3.0747 1.4507 16 8 2.4720 -3.0042 1.7347 17 8 4.4285 -4.0140 2.0265 18 6 3.7889 -4.9071 2.9759 19 6 4.8212 -5.8963 3.5208 20 6 4.1574 -6.8229 4.5066 21 6 4.1460 -8.1757 4.4653 22 7 3.4394 -8.5799 5.5462 23 6 3.1639 -9.9691 5.9212 24 6 3.6267 -10.2089 7.3352 25 8 4.1349 -9.3117 7.9650 26 8 3.4742 -11.4193 7.8950 27 7 3.0470 -7.5340 6.1857 28 7 3.4588 -6.4701 5.5914 29 1 -0.4850 0.8400 0.0004 30 1 3.3502 0.3606 -1.6925 31 1 5.7721 0.3314 -2.0755 32 1 7.2101 -1.2443 -0.8543 33 1 6.2465 -2.8183 0.7658 34 1 3.3736 -4.3255 3.7991 35 1 2.9885 -5.4542 2.4777 36 1 5.2367 -6.4778 2.6979 37 1 5.6212 -5.3488 4.0192 38 1 4.6095 -8.8059 3.7206 39 1 2.0927 -10.1583 5.8525 40 1 3.6954 -10.6399 5.2462 41 1 3.7867 -11.5250 8.8041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833069119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:28 Heat of formation + Delta-G solvation = -76.388370 kcal Electronic energy + Delta-G solvation = -28177.185679 eV Core-core repulsion = 23830.671740 eV Total energy + Delta-G solvation = -4346.513939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.39801 -41.32244 -41.20255 -39.26696 -37.43895 -37.27844 -36.04339 -35.55643 -34.21902 -32.37499 -32.02551 -30.77174 -29.82692 -27.41605 -25.55492 -24.45664 -23.93807 -23.05611 -22.74891 -21.60628 -21.36386 -19.47514 -19.38707 -18.73015 -18.37496 -17.84527 -17.64504 -17.39789 -17.17423 -16.98896 -16.58035 -15.89625 -15.80654 -15.58397 -15.43781 -14.99228 -14.74234 -14.50730 -14.26966 -14.03588 -13.95721 -13.84544 -13.37650 -13.02919 -12.87414 -12.70822 -12.67424 -12.60820 -12.53075 -12.23766 -12.11866 -12.07052 -11.82011 -11.65864 -11.43323 -11.17725 -11.07724 -10.79014 -10.22286 -9.62624 -9.47803 -8.89771 -6.55821 0.19040 0.45459 0.82328 0.97720 1.08558 1.23695 1.36012 1.36930 1.46509 1.95539 1.96117 1.98926 2.09745 2.64474 3.26367 3.45368 3.61707 3.85470 3.94571 4.01374 4.01848 4.09121 4.23448 4.28535 4.32442 4.40495 4.46202 4.56293 4.70559 4.83166 4.90468 4.98360 5.01324 5.10681 5.27601 5.39893 5.42506 5.53375 5.58773 5.68692 5.86438 5.92481 6.23108 6.39098 6.66524 6.71524 6.78350 7.20597 7.40904 8.16144 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.001959 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.122515 B =14287.606663 C =15177.061546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.036 3.964 3 Si 0.969 3.031 4 H -0.235 1.235 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.445 4.445 8 H 0.064 0.936 9 C 0.104 3.896 10 C -0.249 4.249 11 C -0.050 4.050 12 C -0.231 4.231 13 C -0.021 4.021 14 C -0.260 4.260 15 C 0.500 3.500 16 O -0.545 6.545 17 O -0.356 6.356 18 C 0.075 3.925 19 C -0.014 4.014 20 C -0.043 4.043 21 C -0.005 4.005 22 N -0.291 5.291 23 C 0.121 3.879 24 C 0.473 3.527 25 O -0.543 6.543 26 O -0.498 6.498 27 N -0.104 5.104 28 N -0.308 5.308 29 H 0.296 0.704 30 H 0.112 0.888 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.256 0.744 39 H 0.170 0.830 40 H 0.207 0.793 41 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.703 -22.702 6.414 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.159 1.159 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.474 4.474 8 H 0.082 0.918 9 C 0.101 3.899 10 C -0.268 4.268 11 C -0.068 4.068 12 C -0.250 4.250 13 C -0.039 4.039 14 C -0.262 4.262 15 C 0.350 3.650 16 O -0.437 6.437 17 O -0.274 6.274 18 C 0.000 4.000 19 C -0.052 4.052 20 C -0.181 4.181 21 C -0.155 4.155 22 N -0.086 5.086 23 C 0.000 4.000 24 C 0.314 3.686 25 O -0.432 6.432 26 O -0.312 6.312 27 N -0.083 5.083 28 N -0.175 5.175 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.272 0.728 39 H 0.187 0.813 40 H 0.224 0.776 41 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 11.263 -21.880 7.582 25.750 hybrid contribution -0.269 0.134 0.440 0.533 sum 10.993 -21.746 8.022 25.653 Atomic orbital electron populations 1.69603 1.09543 1.31714 1.35959 1.27132 0.95617 1.04588 0.90528 0.85498 0.78854 0.75537 0.81034 1.15916 1.20418 1.18045 1.19785 0.92330 0.95395 1.39844 0.91843 1.17771 0.92391 0.90560 0.89198 1.21356 0.96647 1.05471 1.03304 1.21362 0.92329 0.96414 0.96677 1.21023 1.00454 1.00825 1.02673 1.21351 0.92105 0.95960 0.94518 1.19102 0.95002 1.06658 1.05455 1.21525 0.84237 0.79505 0.79722 1.90829 1.18791 1.71445 1.62656 1.86461 1.42925 1.42920 1.55063 1.22846 0.96331 0.90678 0.90125 1.19687 0.95453 0.93926 0.96162 1.22031 1.04392 0.94282 0.97413 1.24162 1.00928 0.95785 0.94660 1.47188 1.35164 1.08325 1.17918 1.21921 1.08881 0.76947 0.92238 1.23360 0.74962 0.80212 0.90023 1.90892 1.41944 1.45840 1.64565 1.84412 1.77465 1.32172 1.37122 1.78353 1.20962 0.88846 1.20153 1.75091 1.13420 1.20889 1.08133 0.89350 0.87011 0.83807 0.83354 0.84141 0.93932 0.92679 0.85002 0.88724 0.72795 0.81319 0.77596 0.70162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.04 13.92 21.88 0.30 -48.73 16 2 C 0.04 2.05 5.47 85.37 0.47 2.52 16 3 Si 0.97 43.62 24.61 68.60 1.69 45.31 16 4 H -0.24 -9.35 6.45 99.48 0.64 -8.71 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -11.82 7.05 99.48 0.70 -11.12 16 7 C -0.45 -26.86 8.11 23.41 0.19 -26.67 16 8 H 0.06 4.36 6.30 -2.91 -0.02 4.34 16 9 C 0.10 5.52 5.01 -21.10 -0.11 5.42 16 10 C -0.25 -11.25 7.20 22.72 0.16 -11.09 16 11 C -0.05 -1.80 10.01 22.26 0.22 -1.58 16 12 C -0.23 -7.79 10.03 22.40 0.22 -7.57 16 13 C -0.02 -0.81 9.60 22.51 0.22 -0.60 16 14 C -0.26 -12.63 5.92 -19.71 -0.12 -12.74 16 15 C 0.50 25.01 7.84 70.20 0.55 25.56 16 16 O -0.55 -32.10 13.45 19.73 0.27 -31.83 16 17 O -0.36 -14.14 9.49 -57.24 -0.54 -14.68 16 18 C 0.08 2.62 5.45 71.98 0.39 3.01 16 19 C -0.01 -0.31 6.17 29.85 0.18 -0.13 16 20 C -0.04 -1.06 6.50 41.60 0.27 -0.78 16 21 C -0.01 -0.08 11.49 83.49 0.96 0.88 16 22 N -0.29 -4.95 3.20 -351.46 -1.12 -6.07 16 23 C 0.12 0.56 7.05 85.63 0.60 1.16 16 24 C 0.47 5.12 8.34 71.24 0.59 5.72 16 25 O -0.54 -12.59 16.43 21.99 0.36 -12.23 16 26 O -0.50 -2.00 13.42 -51.46 -0.69 -2.69 16 27 N -0.10 -3.06 12.13 37.02 0.45 -2.61 16 28 N -0.31 -10.27 12.40 -48.61 -0.60 -10.87 16 29 H 0.30 15.33 8.29 -92.71 -0.77 14.56 16 30 H 0.11 4.95 4.95 -2.91 -0.01 4.94 16 31 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 32 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.14 4.47 7.61 -2.92 -0.02 4.45 16 34 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.13 1.98 8.12 -2.39 -0.02 1.96 16 37 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.26 0.23 8.06 -2.91 -0.02 0.20 16 39 H 0.17 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.21 -1.42 8.07 -2.39 -0.02 -1.44 16 41 H 0.44 -0.89 9.10 -74.05 -0.67 -1.56 16 Total: -1.00 -96.66 363.05 5.29 -91.37 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.37 Total: 9.93 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.82 Total: -16.89 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -0.97 Total: -68.28 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -0.61 Total: -61.44 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.69 Total: 45.31 kcal Total: -96.66 5.29 -91.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.982 kcal (2) G-P(sol) polarization free energy of solvation -96.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds