Wall clock time and date at job start Wed Apr 1 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47047 * 2 1 4 4 C 1.52997 * 109.46951 * 239.99469 * 2 1 3 5 5 Cl 1.80298 * 109.47127 * 60.00176 * 4 2 1 6 6 C 1.53004 * 109.46936 * 119.99714 * 2 1 3 7 7 S 1.81395 * 109.47290 * 300.00064 * 6 2 1 8 8 O 1.42104 * 110.54756 * 68.37439 * 7 6 2 9 9 O 1.42105 * 110.54229 * 291.62405 * 7 6 2 10 10 N 1.65600 * 104.45027 * 180.02562 * 7 6 2 11 11 C 1.46499 * 120.00035 * 64.99954 * 10 7 6 12 12 C 1.50699 * 109.46859 * 164.72540 * 11 10 7 13 13 C 1.38631 * 119.74868 * 269.72236 * 12 11 10 14 14 C 1.37622 * 120.24567 * 179.72539 * 13 12 11 15 15 C 1.40711 * 119.74765 * 0.57090 * 14 13 12 16 16 C 1.41392 * 120.24759 * 179.68174 * 15 14 13 17 17 H 1.07996 * 120.00505 * 204.40715 * 16 15 14 18 18 C 1.39950 * 119.99897 * 24.40886 * 16 15 14 19 19 N 1.30820 * 119.99859 * 17.84841 * 18 16 15 20 20 Si 1.86799 * 119.99972 * 197.84346 * 18 16 15 21 21 H 1.48497 * 109.46785 * 60.00329 * 20 18 16 22 22 H 1.48506 * 109.46964 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47431 * 300.00037 * 20 18 16 24 24 C 1.40720 * 119.50824 * 359.70299 * 15 14 13 25 25 C 1.37613 * 119.74750 * 0.02562 * 24 15 14 26 26 H 1.09002 * 109.46994 * 299.99973 * 1 2 3 27 27 H 1.08994 * 109.47186 * 60.00555 * 1 2 3 28 28 H 1.09005 * 109.47269 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47118 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46768 * 299.99646 * 3 2 1 31 31 H 1.08998 * 109.47549 * 59.99801 * 3 2 1 32 32 H 1.09005 * 109.47079 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47498 * 300.00466 * 4 2 1 34 34 H 1.08995 * 109.47056 * 179.97438 * 6 2 1 35 35 H 1.09001 * 109.46847 * 59.99942 * 6 2 1 36 36 H 0.97005 * 119.99579 * 244.72279 * 10 7 6 37 37 H 1.09002 * 109.46783 * 284.72090 * 11 10 7 38 38 H 1.08997 * 109.47432 * 44.72162 * 11 10 7 39 39 H 1.08000 * 119.88035 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.12375 * 180.28045 * 14 13 12 41 41 H 0.97000 * 120.00250 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.12682 * 179.97438 * 24 15 14 43 43 H 1.08001 * 119.87991 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 17 1.4390 0.1285 -2.7213 6 6 2.0400 -0.7212 1.2493 7 16 1.4354 0.1339 2.7304 8 8 0.0279 -0.0182 2.8545 9 8 2.0480 1.4101 2.8544 10 7 2.0541 -0.7399 3.9937 11 6 3.5026 -0.7962 4.2055 12 6 3.7878 -1.3176 5.5903 13 6 3.9050 -0.4301 6.6489 14 6 4.1597 -0.8955 7.9187 15 6 4.3133 -2.2768 8.1383 16 6 4.5819 -2.7660 9.4375 17 1 5.0771 -3.7172 9.5647 18 6 4.2060 -2.0174 10.5586 19 7 3.3183 -1.0637 10.4406 20 14 4.9716 -2.3801 12.2234 21 1 6.4425 -2.1920 12.1432 22 1 4.4094 -1.4540 13.2391 23 1 4.6722 -3.7818 12.6112 24 6 4.1980 -3.1679 7.0553 25 6 3.9373 -2.6806 5.7950 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 1.4572 -1.2112 4.5958 37 1 3.9522 -1.4605 3.4674 38 1 3.9245 0.2032 4.0994 39 1 3.7919 0.6302 6.4771 40 1 4.2461 -0.2027 8.7427 41 1 3.0575 -0.5450 11.2177 42 1 4.3144 -4.2300 7.2124 43 1 3.8480 -3.3626 4.9623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867447277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:01 Heat of formation + Delta-G solvation = -83.419197 kcal Electronic energy + Delta-G solvation = -25526.630112 eV Core-core repulsion = 21723.671658 eV Total energy + Delta-G solvation = -3802.958453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.095 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.31244 -37.91463 -37.06267 -36.01369 -35.73900 -35.11318 -33.42641 -30.11769 -29.36896 -28.18837 -27.63878 -27.57739 -26.59798 -23.62574 -21.11295 -20.25778 -19.96711 -19.09053 -17.73371 -17.41190 -16.54843 -16.25585 -15.51823 -15.41829 -15.26372 -14.73836 -14.36989 -14.19046 -14.01165 -13.81018 -13.61580 -13.42760 -12.81316 -12.75595 -12.52793 -12.39474 -12.27515 -12.04671 -11.96277 -11.77917 -11.69454 -11.51487 -11.47240 -11.35657 -11.17426 -11.07674 -11.02138 -10.65978 -10.65507 -10.52968 -10.38612 -9.78496 -9.49989 -9.29209 -9.13306 -7.59091 -7.47903 -6.88234 -4.47989 0.24567 1.88514 2.50923 2.89827 2.96509 3.00883 3.03015 3.19996 3.74018 3.84056 3.97901 4.07336 4.18800 4.33543 4.50217 4.69478 4.77547 5.01326 5.10310 5.14776 5.34996 5.39623 5.52592 5.54601 5.56366 5.63253 5.67909 5.96377 5.98130 6.00533 6.16331 6.30065 6.35063 6.85150 6.95425 7.14732 7.21359 7.28277 7.48865 7.72269 7.93525 7.98559 8.17276 8.52024 8.76673 8.84574 10.05626 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.002069 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.422389 B =13531.463514 C =13845.615171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.055 4.055 3 C -0.181 4.181 4 C -0.015 4.015 5 Cl -0.180 7.180 6 C -0.631 4.631 7 S 2.610 3.390 8 O -0.961 6.961 9 O -0.953 6.953 10 N -1.109 6.109 11 C 0.178 3.822 12 C -0.237 4.237 13 C -0.080 4.080 14 C -0.169 4.169 15 C 0.116 3.884 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.230 4.230 25 C -0.073 4.073 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.420 0.580 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.283 0.717 42 H 0.093 0.907 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 0.820 -18.540 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.057 4.057 3 C -0.238 4.238 4 C -0.078 4.078 5 Cl -0.154 7.154 6 C -0.759 4.759 7 S 2.702 3.298 8 O -0.951 6.951 9 O -0.943 6.943 10 N -0.871 5.871 11 C 0.054 3.946 12 C -0.240 4.240 13 C -0.100 4.100 14 C -0.189 4.189 15 C 0.113 3.887 16 C -0.487 4.487 17 H 0.097 0.903 18 C -0.144 4.144 19 N -0.410 5.410 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.250 4.250 25 C -0.092 4.092 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.564 1.931 -18.596 18.871 hybrid contribution 0.428 -1.038 0.722 1.335 sum -2.137 0.893 -17.874 18.024 Atomic orbital electron populations 1.22447 0.92362 1.04140 1.04843 1.20462 0.97317 0.96220 0.91709 1.22451 1.02714 0.93798 1.04873 1.24473 1.01646 0.97668 0.84050 1.98710 1.90531 1.81724 1.44417 1.30802 1.13183 1.14288 1.17597 1.04993 0.74206 0.75308 0.75278 1.93583 1.29426 1.86768 1.85302 1.93590 1.78184 1.37631 1.84867 1.55824 1.16086 1.70964 1.44201 1.19969 0.77996 1.00126 0.96491 1.18836 1.18511 0.93685 0.92973 1.20600 0.99162 0.97043 0.93151 1.21332 1.06370 0.95922 0.95251 1.17672 0.87036 0.91525 0.92454 1.19631 1.33677 1.05120 0.90233 0.90293 1.25966 0.93005 0.93782 1.01666 1.69808 1.21684 1.16680 1.32817 0.86331 0.80546 0.79376 0.80309 1.18723 1.20243 1.18930 1.20958 1.12992 0.97707 0.93361 1.20375 0.99252 0.93631 0.95912 0.90284 0.90284 0.91147 0.91067 0.90306 0.90214 0.88415 0.88471 0.84619 0.84565 0.74493 0.92978 0.91086 0.89135 0.86331 0.90551 0.88920 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 7.79 37.16 0.29 -1.39 16 2 C -0.06 -0.47 0.58 -154.51 -0.09 -0.56 16 3 C -0.18 -1.69 7.79 37.15 0.29 -1.40 16 4 C -0.01 -0.10 5.60 37.16 0.21 0.11 16 5 Cl -0.18 -1.50 26.53 -51.86 -1.38 -2.88 16 6 C -0.63 -5.26 5.07 37.16 0.19 -5.07 16 7 S 2.61 33.34 4.49 -107.50 -0.48 32.86 16 8 O -0.96 -14.59 15.70 -57.54 -0.90 -15.49 16 9 O -0.95 -14.82 15.11 -57.54 -0.87 -15.69 16 10 N -1.11 -15.60 5.88 -11.66 -0.07 -15.67 16 11 C 0.18 2.69 6.25 -5.19 -0.03 2.66 16 12 C -0.24 -4.63 5.30 -104.33 -0.55 -5.19 16 13 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 14 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 15 C 0.12 2.94 5.57 -106.83 -0.60 2.34 16 16 C -0.46 -11.60 9.05 -37.74 -0.34 -11.94 16 17 H 0.08 1.91 7.91 -52.49 -0.41 1.50 16 18 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 19 N -0.79 -19.61 10.95 55.55 0.61 -19.01 16 20 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.23 -5.27 9.80 -38.87 -0.38 -5.65 16 25 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 26 H 0.08 0.86 5.46 -51.93 -0.28 0.58 16 27 H 0.08 0.67 7.06 -51.93 -0.37 0.31 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.68 7.06 -51.93 -0.37 0.31 16 31 H 0.08 0.88 5.46 -51.93 -0.28 0.59 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.14 0.87 8.14 -51.92 -0.42 0.44 16 36 H 0.42 6.11 8.61 -34.47 -0.30 5.81 16 37 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.07 1.06 7.62 -51.93 -0.40 0.67 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 41 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 42 H 0.09 2.00 8.06 -52.48 -0.42 1.58 16 43 H 0.09 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -29.51 370.30 -10.84 -40.36 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.09 Total: 9.94 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: -2.21 Total: -32.90 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.54 Total: -34.68 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.77 Total: -31.18 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 33.34 SS G_CDS: -0.48 Total: 32.86 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.38 Total: -2.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.51 -10.84 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867447277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.061 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds