Wall clock time and date at job start Wed Apr 1 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47047 * 2 1 4 4 C 1.52997 * 109.46951 * 239.99469 * 2 1 3 5 5 Cl 1.80298 * 109.47127 * 60.00176 * 4 2 1 6 6 C 1.53004 * 109.46936 * 119.99714 * 2 1 3 7 7 S 1.81395 * 109.47290 * 300.00064 * 6 2 1 8 8 O 1.42104 * 110.54756 * 68.37439 * 7 6 2 9 9 O 1.42105 * 110.54229 * 291.62405 * 7 6 2 10 10 N 1.65600 * 104.45027 * 180.02562 * 7 6 2 11 11 C 1.46499 * 120.00035 * 64.99954 * 10 7 6 12 12 C 1.50699 * 109.46859 * 164.72540 * 11 10 7 13 13 C 1.38631 * 119.74868 * 269.72236 * 12 11 10 14 14 C 1.37622 * 120.24567 * 179.72539 * 13 12 11 15 15 C 1.40711 * 119.74765 * 0.57090 * 14 13 12 16 16 C 1.41392 * 120.24759 * 179.68174 * 15 14 13 17 17 H 1.07996 * 120.00505 * 204.40715 * 16 15 14 18 18 C 1.39950 * 119.99897 * 24.40886 * 16 15 14 19 19 N 1.30820 * 119.99859 * 17.84841 * 18 16 15 20 20 Si 1.86799 * 119.99972 * 197.84346 * 18 16 15 21 21 H 1.48497 * 109.46785 * 60.00329 * 20 18 16 22 22 H 1.48506 * 109.46964 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47431 * 300.00037 * 20 18 16 24 24 C 1.40720 * 119.50824 * 359.70299 * 15 14 13 25 25 C 1.37613 * 119.74750 * 0.02562 * 24 15 14 26 26 H 1.09002 * 109.46994 * 299.99973 * 1 2 3 27 27 H 1.08994 * 109.47186 * 60.00555 * 1 2 3 28 28 H 1.09005 * 109.47269 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47118 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46768 * 299.99646 * 3 2 1 31 31 H 1.08998 * 109.47549 * 59.99801 * 3 2 1 32 32 H 1.09005 * 109.47079 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47498 * 300.00466 * 4 2 1 34 34 H 1.08995 * 109.47056 * 179.97438 * 6 2 1 35 35 H 1.09001 * 109.46847 * 59.99942 * 6 2 1 36 36 H 0.97005 * 119.99579 * 244.72279 * 10 7 6 37 37 H 1.09002 * 109.46783 * 284.72090 * 11 10 7 38 38 H 1.08997 * 109.47432 * 44.72162 * 11 10 7 39 39 H 1.08000 * 119.88035 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.12375 * 180.28045 * 14 13 12 41 41 H 0.97000 * 120.00250 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.12682 * 179.97438 * 24 15 14 43 43 H 1.08001 * 119.87991 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 17 1.4390 0.1285 -2.7213 6 6 2.0400 -0.7212 1.2493 7 16 1.4354 0.1339 2.7304 8 8 0.0279 -0.0182 2.8545 9 8 2.0480 1.4101 2.8544 10 7 2.0541 -0.7399 3.9937 11 6 3.5026 -0.7962 4.2055 12 6 3.7878 -1.3176 5.5903 13 6 3.9050 -0.4301 6.6489 14 6 4.1597 -0.8955 7.9187 15 6 4.3133 -2.2768 8.1383 16 6 4.5819 -2.7660 9.4375 17 1 5.0771 -3.7172 9.5647 18 6 4.2060 -2.0174 10.5586 19 7 3.3183 -1.0637 10.4406 20 14 4.9716 -2.3801 12.2234 21 1 6.4425 -2.1920 12.1432 22 1 4.4094 -1.4540 13.2391 23 1 4.6722 -3.7818 12.6112 24 6 4.1980 -3.1679 7.0553 25 6 3.9373 -2.6806 5.7950 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 1.4572 -1.2112 4.5958 37 1 3.9522 -1.4605 3.4674 38 1 3.9245 0.2032 4.0994 39 1 3.7919 0.6302 6.4771 40 1 4.2461 -0.2027 8.7427 41 1 3.0575 -0.5450 11.2177 42 1 4.3144 -4.2300 7.2124 43 1 3.8480 -3.3626 4.9623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867447277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:00 Heat of formation + Delta-G solvation = -101.469429 kcal Electronic energy + Delta-G solvation = -25527.412829 eV Core-core repulsion = 21723.671658 eV Total energy + Delta-G solvation = -3803.741170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.095 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.58070 -38.96439 -38.15770 -36.99188 -36.54929 -36.39283 -35.02877 -31.76997 -31.10960 -28.91811 -28.33924 -28.25526 -28.04211 -25.16616 -22.86710 -21.85420 -20.83422 -19.98243 -19.21521 -18.74965 -17.62848 -17.18953 -17.13241 -16.29947 -16.02904 -15.83640 -15.66199 -15.54388 -15.22078 -15.00375 -14.50074 -14.26890 -14.05268 -13.90279 -13.79640 -13.73942 -13.62670 -13.21604 -13.06151 -12.92934 -12.81487 -12.71891 -12.51188 -12.38272 -12.37141 -12.30561 -12.10290 -12.02745 -11.75020 -11.45214 -11.25090 -11.19799 -11.09840 -11.02438 -10.26678 -9.36070 -9.24263 -8.65457 -6.34881 -0.71471 0.90576 1.17332 1.36770 1.37592 1.47693 1.50853 1.92605 2.19478 2.72825 2.85843 3.24017 3.40484 3.52395 3.56893 3.75701 4.02631 4.07818 4.17276 4.38008 4.52801 4.53514 4.54946 4.57536 4.65887 4.69088 4.74415 4.85551 4.87097 4.97558 5.08067 5.13194 5.15718 5.27806 5.29714 5.39945 5.46121 5.71648 5.95417 6.10855 6.12274 6.24748 6.39545 6.71456 6.93681 7.04272 8.30716 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.002069 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.422389 B =13531.463514 C =13845.615171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.056 4.056 3 C -0.188 4.188 4 C -0.012 4.012 5 Cl -0.197 7.197 6 C -0.604 4.604 7 S 2.609 3.391 8 O -0.992 6.992 9 O -0.990 6.990 10 N -1.116 6.116 11 C 0.178 3.822 12 C -0.218 4.218 13 C -0.093 4.093 14 C -0.197 4.197 15 C 0.081 3.919 16 C -0.498 4.498 17 H 0.078 0.922 18 C 0.033 3.967 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.245 4.245 25 C -0.068 4.068 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.416 0.584 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.287 0.713 42 H 0.099 0.901 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -0.850 -21.364 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.058 4.058 3 C -0.245 4.245 4 C -0.075 4.075 5 Cl -0.170 7.170 6 C -0.737 4.737 7 S 2.706 3.294 8 O -0.983 6.983 9 O -0.980 6.980 10 N -0.875 5.875 11 C 0.053 3.947 12 C -0.221 4.221 13 C -0.112 4.112 14 C -0.217 4.217 15 C 0.079 3.921 16 C -0.528 4.528 17 H 0.096 0.904 18 C -0.182 4.182 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.182 1.182 24 C -0.264 4.264 25 C -0.086 4.086 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.186 0.814 35 H 0.187 0.813 36 H 0.251 0.749 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.746 0.281 -21.373 21.446 hybrid contribution 0.107 -0.468 1.303 1.388 sum -1.639 -0.187 -20.071 20.138 Atomic orbital electron populations 1.22508 0.93325 1.04724 1.03911 1.20473 0.96635 0.95898 0.92761 1.22511 1.03551 0.94509 1.03938 1.24598 1.02893 0.97960 0.82054 1.98719 1.90791 1.82195 1.45333 1.30551 1.15107 1.14807 1.13227 1.04807 0.73426 0.74825 0.76330 1.93549 1.31342 1.87060 1.86307 1.93550 1.78357 1.40147 1.85955 1.55641 1.15431 1.70964 1.45511 1.20059 0.78831 1.01202 0.94596 1.19307 1.14912 0.93327 0.94572 1.20847 0.99119 0.98106 0.93121 1.21272 1.08676 0.95802 0.95920 1.18017 0.88335 0.92171 0.93597 1.19866 1.35662 1.05937 0.91313 0.90434 1.26793 0.92920 0.93370 1.05143 1.69879 1.23108 1.18017 1.33982 0.85262 0.79446 0.79416 0.75666 1.18455 1.19478 1.18208 1.21219 1.13180 0.97890 0.94160 1.20790 0.97336 0.94477 0.96044 0.92517 0.90024 0.89834 0.89798 0.90065 0.92437 0.86292 0.86327 0.81361 0.81252 0.74922 0.88178 0.91046 0.88459 0.88685 0.90197 0.88241 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 7.79 71.98 0.56 -2.49 16 2 C -0.06 -0.74 0.58 -52.18 -0.03 -0.77 16 3 C -0.19 -3.08 7.79 71.98 0.56 -2.52 16 4 C -0.01 -0.10 5.60 71.98 0.40 0.30 16 5 Cl -0.20 -2.72 26.53 -2.72 -0.07 -2.79 16 6 C -0.60 -7.09 5.07 71.98 0.37 -6.72 16 7 S 2.61 61.37 4.49 -56.49 -0.25 61.12 16 8 O -0.99 -29.43 15.70 -127.65 -2.00 -31.44 16 9 O -0.99 -29.97 15.11 -127.65 -1.93 -31.90 16 10 N -1.12 -28.44 5.88 -190.79 -1.12 -29.56 16 11 C 0.18 4.70 6.25 85.63 0.54 5.23 16 12 C -0.22 -8.09 5.30 -19.67 -0.10 -8.20 16 13 C -0.09 -4.14 9.67 22.22 0.21 -3.93 16 14 C -0.20 -10.23 8.70 22.73 0.20 -10.04 16 15 C 0.08 4.27 5.57 -21.29 -0.12 4.15 16 16 C -0.50 -26.41 9.05 23.46 0.21 -26.19 16 17 H 0.08 3.93 7.91 -2.91 -0.02 3.90 16 18 C 0.03 1.65 5.14 85.26 0.44 2.08 16 19 N -0.82 -43.32 10.95 21.83 0.24 -43.08 16 20 Si 0.98 37.90 29.60 68.60 2.03 39.93 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.24 -11.14 9.80 22.73 0.22 -10.92 16 25 C -0.07 -2.54 9.67 22.22 0.21 -2.32 16 26 H 0.06 1.20 5.46 -2.39 -0.01 1.18 16 27 H 0.08 1.26 7.06 -2.39 -0.02 1.24 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.26 7.06 -2.39 -0.02 1.25 16 31 H 0.06 1.22 5.46 -2.39 -0.01 1.21 16 32 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.42 11.36 8.61 -96.74 -0.83 10.53 16 37 H 0.10 1.75 8.08 -2.39 -0.02 1.74 16 38 H 0.07 1.92 7.62 -2.39 -0.02 1.90 16 39 H 0.10 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.10 5.27 6.16 -2.91 -0.02 5.25 16 41 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 42 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -69.36 370.30 0.76 -68.60 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.19 Total: 31.46 kcal Atomic # 6 Polarization: -66.01 SS G_CDS: 3.67 Total: -62.34 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -0.88 Total: -72.64 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -3.93 Total: -63.34 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 61.37 SS G_CDS: -0.25 Total: 61.12 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.07 Total: -2.79 kcal Total: -69.36 0.76 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867447277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.870 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds