Wall clock time and date at job start Wed Apr 1 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 117.00031 * 2 1 4 4 O 1.20827 * 120.00084 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.46915 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47140 * 179.97438 * 6 5 3 8 8 C 1.36745 * 120.00278 * 270.00394 * 7 6 5 9 9 H 1.07994 * 120.00024 * 145.92575 * 8 7 6 10 10 C 1.39100 * 119.99725 * 325.93057 * 8 7 6 11 11 N 1.31341 * 119.99977 * 337.82213 * 10 8 7 12 12 Si 1.86798 * 119.99682 * 157.82610 * 10 8 7 13 13 H 1.48502 * 109.46910 * 90.00019 * 12 10 8 14 14 H 1.48499 * 109.47173 * 209.99747 * 12 10 8 15 15 H 1.48496 * 109.47300 * 329.99690 * 12 10 8 16 16 C 1.34772 * 119.99705 * 89.99703 * 7 6 5 17 17 O 1.21783 * 120.00412 * 354.98888 * 16 7 6 18 18 C 1.43202 * 119.99869 * 174.97982 * 16 7 6 19 19 C 8.02278 * 154.96071 * 339.81446 * 2 1 3 20 20 C 9.39330 * 157.67083 * 340.79203 * 2 1 3 21 21 C 1.39997 * 120.11532 * 47.70039 * 20 19 18 22 22 C 1.37712 * 119.97504 * 179.79501 * 21 20 19 23 23 C 1.38899 * 120.25252 * 0.44895 * 22 21 20 24 24 C 1.39599 * 120.10426 * 359.55121 * 23 22 21 25 25 C 1.38081 * 120.00953 * 0.22516 * 24 23 22 26 26 O 1.36539 * 108.59309 * 180.23861 * 24 23 22 27 27 C 1.43973 * 105.45463 * 342.68750 * 26 24 23 28 28 O 1.36395 * 131.32895 * 179.86794 * 23 22 21 29 29 H 1.09005 * 109.46995 * 59.99622 * 1 2 3 30 30 H 1.08994 * 109.47527 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46780 * 300.00429 * 1 2 3 32 32 H 1.09001 * 109.47147 * 59.99703 * 5 3 2 33 33 H 1.09001 * 109.46863 * 299.99829 * 5 3 2 34 34 H 1.09001 * 109.47202 * 60.00048 * 6 5 3 35 35 H 1.09001 * 109.47470 * 299.99769 * 6 5 3 36 36 H 0.96999 * 119.99927 * 176.47852 * 11 10 8 37 37 H 1.08002 * 120.00790 * 0.04509 * 21 20 19 38 38 H 1.07997 * 119.87057 * 180.30956 * 22 21 20 39 39 H 1.07998 * 120.05699 * 180.02562 * 25 24 23 40 40 H 1.09005 * 110.56044 * 268.63030 * 27 26 24 41 41 H 1.09001 * 110.56511 * 145.78196 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4633 2.8186 -0.0011 8 6 6.1461 2.8548 1.1832 9 1 7.1131 2.3808 1.2636 10 6 5.5950 3.5020 2.2842 11 7 4.6760 4.4244 2.1117 12 14 6.1620 3.0593 4.0081 13 1 7.3097 3.9216 4.3883 14 1 5.0464 3.2696 4.9654 15 1 6.5806 1.6350 4.0411 16 6 6.1362 2.8534 -1.1682 17 8 5.5365 2.7293 -2.2209 18 6 7.5565 3.0365 -1.1706 19 6 8.7208 3.1870 -1.1717 20 6 10.1410 3.3701 -1.1741 21 6 10.9404 2.6514 -2.0710 22 6 12.3055 2.8329 -2.0737 23 6 12.8952 3.7204 -1.1828 24 6 12.1048 4.4407 -0.2855 25 6 10.7348 4.2680 -0.2793 26 8 12.9177 5.2380 0.4679 27 6 14.2425 4.6983 0.3050 28 8 14.1996 4.0688 -0.9890 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9558 0.7808 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2363 0.8889 35 1 3.6102 3.2359 -0.8911 36 1 4.2550 4.8394 2.8807 37 1 10.4861 1.9579 -2.7632 38 1 12.9200 2.2813 -2.7698 39 1 10.1225 4.8252 0.4143 40 1 14.4546 3.9632 1.0815 41 1 14.9852 5.4959 0.3183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:28 Heat of formation + Delta-G solvation = -91.236775 kcal Electronic energy + Delta-G solvation = -28321.303374 eV Core-core repulsion = 23941.852809 eV Total energy + Delta-G solvation = -4379.450565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.23455 -40.10119 -38.71245 -38.06234 -36.40996 -36.22734 -35.12646 -33.19325 -32.12677 -30.97652 -30.59552 -29.51040 -27.57624 -26.06415 -25.27352 -24.54291 -23.17781 -22.94368 -21.13751 -20.05473 -18.96068 -18.07798 -17.91149 -17.41894 -17.27713 -16.57825 -16.31084 -16.20199 -15.96140 -15.23499 -14.73692 -14.60815 -14.56053 -14.10314 -13.94790 -13.90740 -13.71680 -13.32087 -13.15505 -13.10666 -12.84684 -12.66713 -12.29198 -12.16227 -11.84830 -11.54762 -11.39897 -11.33160 -11.16956 -10.92159 -10.57547 -10.54092 -10.29502 -10.11114 -10.05941 -9.86649 -9.45183 -8.99059 -8.83407 -7.94356 -7.85228 -6.59015 -4.27973 0.72909 1.16091 2.35145 2.62438 2.71041 2.90009 3.04830 3.08993 3.12819 3.16252 3.31931 3.71755 3.96226 4.22143 4.36856 4.46700 4.49801 4.69737 4.85513 4.97737 5.03599 5.10445 5.16780 5.22175 5.28700 5.29244 5.43718 5.60562 5.73886 5.80720 5.90061 6.00871 6.03211 6.19917 6.21549 6.39670 6.44785 6.67995 6.75688 7.00525 7.15453 7.30041 7.54873 7.90368 8.12420 8.15596 8.81369 9.16703 9.60013 10.39241 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002443 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.243510 B =11457.276662 C =12798.451242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.121 3.879 7 N -0.409 5.409 8 C -0.346 4.346 9 H 0.098 0.902 10 C 0.048 3.952 11 N -0.840 5.840 12 Si 0.914 3.086 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.555 3.445 17 O -0.589 6.589 18 C -0.089 4.089 19 C -0.135 4.135 20 C 0.049 3.951 21 C -0.087 4.087 22 C -0.099 4.099 23 C 0.030 3.970 24 C 0.032 3.968 25 C -0.076 4.076 26 O -0.307 6.307 27 C 0.213 3.787 28 O -0.310 6.310 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.276 0.724 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.083 0.917 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 -5.208 -0.682 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.163 4.163 6 C -0.003 4.003 7 N -0.124 5.124 8 C -0.473 4.473 9 H 0.115 0.885 10 C -0.161 4.161 11 N -0.475 5.475 12 Si 0.739 3.261 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.189 1.189 16 C 0.345 3.655 17 O -0.477 6.477 18 C -0.092 4.092 19 C -0.138 4.138 20 C 0.049 3.951 21 C -0.106 4.106 22 C -0.117 4.117 23 C -0.015 4.015 24 C -0.012 4.012 25 C -0.094 4.094 26 O -0.224 6.224 27 C 0.101 3.899 28 O -0.226 6.226 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.101 0.899 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.147 -4.617 -1.028 10.298 hybrid contribution 0.285 0.026 1.169 1.204 sum 9.432 -4.591 0.141 10.491 Atomic orbital electron populations 1.23178 0.77270 1.03078 1.02372 1.86537 1.22805 1.34304 1.84627 1.23988 0.92283 0.80938 0.71770 1.90656 1.67258 1.36204 1.45055 1.21840 0.86077 1.02819 1.05603 1.21387 0.80808 0.91783 1.06273 1.43311 1.05068 1.59643 1.04377 1.19552 1.05511 1.35193 0.87058 0.88459 1.25437 0.96930 0.92972 1.00770 1.69896 1.25689 1.19471 1.32430 0.86143 0.78805 0.79674 0.81494 1.19845 1.20372 1.18917 1.15127 0.82322 0.83517 0.84522 1.90758 1.68458 1.57000 1.31451 1.21033 0.92432 0.99439 0.96289 1.18577 0.90456 1.00675 1.04072 1.15564 0.86786 0.96872 0.95923 1.21094 0.91596 0.99492 0.98370 1.19907 0.94305 0.97830 0.99672 1.19982 0.82716 0.99205 0.99572 1.19524 0.92744 0.94005 0.94971 1.20203 0.90084 0.99099 1.00051 1.87396 1.17691 1.50195 1.67075 1.25608 0.85224 0.95360 0.83691 1.87307 1.23987 1.74892 1.36448 0.92134 0.88581 0.92132 0.88102 0.87473 0.85723 0.91034 0.91348 0.83765 0.84319 0.83733 0.89900 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.80 10.57 -39.26 -0.41 -6.21 16 3 C 0.47 8.71 7.96 36.01 0.29 9.00 16 4 O -0.50 -10.67 15.73 -18.75 -0.29 -10.96 16 5 C -0.12 -2.40 6.14 -27.88 -0.17 -2.57 16 6 C 0.12 2.80 4.25 -4.04 -0.02 2.79 16 7 N -0.41 -9.98 2.54 -117.52 -0.30 -10.28 16 8 C -0.35 -8.38 8.65 -15.04 -0.13 -8.51 16 9 H 0.10 2.30 7.39 -52.49 -0.39 1.91 16 10 C 0.05 1.14 4.97 -17.44 -0.09 1.05 16 11 N -0.84 -21.28 11.26 55.50 0.62 -20.65 16 12 Si 0.91 18.46 29.61 -169.99 -5.03 13.42 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 14 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 15 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 16 C 0.55 13.70 7.48 -14.34 -0.11 13.59 16 17 O -0.59 -15.56 16.73 5.11 0.09 -15.47 16 18 C -0.09 -1.98 12.03 -38.83 -0.47 -2.45 16 19 C -0.13 -2.60 13.24 -38.84 -0.51 -3.11 16 20 C 0.05 0.77 5.75 -106.66 -0.61 0.16 16 21 C -0.09 -1.12 9.76 -39.12 -0.38 -1.50 16 22 C -0.10 -1.13 10.04 -39.53 -0.40 -1.53 16 23 C 0.03 0.38 7.16 -38.83 -0.28 0.10 16 24 C 0.03 0.45 7.13 -39.13 -0.28 0.17 16 25 C -0.08 -1.15 9.78 -38.98 -0.38 -1.53 16 26 O -0.31 -4.01 11.41 -45.82 -0.52 -4.54 16 27 C 0.21 1.95 8.88 101.05 0.90 2.85 16 28 O -0.31 -3.65 11.39 -45.34 -0.52 -4.16 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 32 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 34 H 0.13 3.11 5.24 -51.93 -0.27 2.84 16 35 H 0.07 1.76 7.45 -51.93 -0.39 1.37 16 36 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -31.13 373.88 -6.72 -37.85 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.41 Total: 5.38 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.57 Total: 9.99 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.33 Total: -30.93 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.66 Total: -41.35 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.13 -6.72 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.384 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds