Wall clock time and date at job start Wed Apr 1 2020 04:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 117.00031 * 2 1 4 4 O 1.20827 * 120.00084 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.46915 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47140 * 179.97438 * 6 5 3 8 8 C 1.36745 * 120.00278 * 270.00394 * 7 6 5 9 9 H 1.07994 * 120.00024 * 145.92575 * 8 7 6 10 10 C 1.39100 * 119.99725 * 325.93057 * 8 7 6 11 11 N 1.31341 * 119.99977 * 337.82213 * 10 8 7 12 12 Si 1.86798 * 119.99682 * 157.82610 * 10 8 7 13 13 H 1.48502 * 109.46910 * 90.00019 * 12 10 8 14 14 H 1.48499 * 109.47173 * 209.99747 * 12 10 8 15 15 H 1.48496 * 109.47300 * 329.99690 * 12 10 8 16 16 C 1.34772 * 119.99705 * 89.99703 * 7 6 5 17 17 O 1.21783 * 120.00412 * 354.98888 * 16 7 6 18 18 C 1.43202 * 119.99869 * 174.97982 * 16 7 6 19 19 C 8.02278 * 154.96071 * 339.81446 * 2 1 3 20 20 C 9.39330 * 157.67083 * 340.79203 * 2 1 3 21 21 C 1.39997 * 120.11532 * 47.70039 * 20 19 18 22 22 C 1.37712 * 119.97504 * 179.79501 * 21 20 19 23 23 C 1.38899 * 120.25252 * 0.44895 * 22 21 20 24 24 C 1.39599 * 120.10426 * 359.55121 * 23 22 21 25 25 C 1.38081 * 120.00953 * 0.22516 * 24 23 22 26 26 O 1.36539 * 108.59309 * 180.23861 * 24 23 22 27 27 C 1.43973 * 105.45463 * 342.68750 * 26 24 23 28 28 O 1.36395 * 131.32895 * 179.86794 * 23 22 21 29 29 H 1.09005 * 109.46995 * 59.99622 * 1 2 3 30 30 H 1.08994 * 109.47527 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46780 * 300.00429 * 1 2 3 32 32 H 1.09001 * 109.47147 * 59.99703 * 5 3 2 33 33 H 1.09001 * 109.46863 * 299.99829 * 5 3 2 34 34 H 1.09001 * 109.47202 * 60.00048 * 6 5 3 35 35 H 1.09001 * 109.47470 * 299.99769 * 6 5 3 36 36 H 0.96999 * 119.99927 * 176.47852 * 11 10 8 37 37 H 1.08002 * 120.00790 * 0.04509 * 21 20 19 38 38 H 1.07997 * 119.87057 * 180.30956 * 22 21 20 39 39 H 1.07998 * 120.05699 * 180.02562 * 25 24 23 40 40 H 1.09005 * 110.56044 * 268.63030 * 27 26 24 41 41 H 1.09001 * 110.56511 * 145.78196 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4633 2.8186 -0.0011 8 6 6.1461 2.8548 1.1832 9 1 7.1131 2.3808 1.2636 10 6 5.5950 3.5020 2.2842 11 7 4.6760 4.4244 2.1117 12 14 6.1620 3.0593 4.0081 13 1 7.3097 3.9216 4.3883 14 1 5.0464 3.2696 4.9654 15 1 6.5806 1.6350 4.0411 16 6 6.1362 2.8534 -1.1682 17 8 5.5365 2.7293 -2.2209 18 6 7.5565 3.0365 -1.1706 19 6 8.7208 3.1870 -1.1717 20 6 10.1410 3.3701 -1.1741 21 6 10.9404 2.6514 -2.0710 22 6 12.3055 2.8329 -2.0737 23 6 12.8952 3.7204 -1.1828 24 6 12.1048 4.4407 -0.2855 25 6 10.7348 4.2680 -0.2793 26 8 12.9177 5.2380 0.4679 27 6 14.2425 4.6983 0.3050 28 8 14.1996 4.0688 -0.9890 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9558 0.7808 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2363 0.8889 35 1 3.6102 3.2359 -0.8911 36 1 4.2550 4.8394 2.8807 37 1 10.4861 1.9579 -2.7632 38 1 12.9200 2.2813 -2.7698 39 1 10.1225 4.8252 0.4143 40 1 14.4546 3.9632 1.0815 41 1 14.9852 5.4959 0.3183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:27 Heat of formation + Delta-G solvation = -109.130091 kcal Electronic energy + Delta-G solvation = -28322.079287 eV Core-core repulsion = 23941.852809 eV Total energy + Delta-G solvation = -4380.226478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.17808 -41.58254 -40.53543 -39.15608 -37.67760 -37.35049 -36.97796 -34.67889 -33.95531 -32.60707 -31.69026 -30.72111 -28.75826 -27.16706 -26.89929 -26.01912 -24.44807 -23.97307 -22.67417 -21.62600 -20.58862 -19.37955 -18.93767 -18.75449 -18.33484 -17.94712 -17.64819 -17.61780 -17.49496 -16.68160 -16.42224 -16.08186 -15.75289 -15.52340 -15.24264 -15.02583 -14.93781 -14.85109 -14.31483 -14.19660 -14.05163 -13.83852 -13.78553 -13.76477 -13.26488 -13.00113 -12.81257 -12.73228 -12.62924 -12.40274 -12.13449 -12.03668 -11.80340 -11.64138 -11.50645 -11.34539 -11.27829 -10.86240 -9.93989 -9.75019 -9.03462 -8.43230 -6.19866 -0.47130 0.12177 0.80126 1.12622 1.37082 1.46917 1.52424 1.59437 1.70079 1.72329 2.23734 2.36890 2.47578 2.65271 2.81388 3.08447 3.34637 3.46008 3.80448 3.81934 4.00322 4.01462 4.09109 4.16051 4.22121 4.25680 4.32390 4.33006 4.45202 4.50252 4.58304 4.70066 4.86502 4.93169 4.98801 5.10911 5.23305 5.25890 5.31765 5.32665 5.41418 5.69104 6.02416 6.23347 6.33387 6.69166 6.93220 7.28898 7.72763 8.56329 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002443 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.243510 B =11457.276662 C =12798.451242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.115 4.115 6 C 0.125 3.875 7 N -0.416 5.416 8 C -0.359 4.359 9 H 0.100 0.900 10 C 0.011 3.989 11 N -0.876 5.876 12 Si 0.981 3.019 13 H -0.272 1.272 14 H -0.276 1.276 15 H -0.253 1.253 16 C 0.548 3.452 17 O -0.621 6.621 18 C -0.163 4.163 19 C -0.079 4.079 20 C 0.010 3.990 21 C -0.068 4.068 22 C -0.089 4.089 23 C 0.041 3.959 24 C 0.019 3.981 25 C -0.083 4.083 26 O -0.325 6.325 27 C 0.203 3.797 28 O -0.313 6.313 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.045 0.955 36 H 0.278 0.722 37 H 0.165 0.835 38 H 0.177 0.823 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.478 -6.838 -0.058 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.154 4.154 6 C 0.002 3.998 7 N -0.130 5.130 8 C -0.486 4.486 9 H 0.118 0.882 10 C -0.195 4.195 11 N -0.511 5.511 12 Si 0.803 3.197 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.176 1.176 16 C 0.339 3.661 17 O -0.511 6.511 18 C -0.166 4.166 19 C -0.082 4.082 20 C 0.010 3.990 21 C -0.086 4.086 22 C -0.107 4.107 23 C -0.004 4.004 24 C -0.025 4.025 25 C -0.102 4.102 26 O -0.242 6.242 27 C 0.093 3.907 28 O -0.229 6.229 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.183 0.817 38 H 0.194 0.806 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.966 -6.271 -0.395 13.515 hybrid contribution -0.364 0.579 0.936 1.159 sum 11.602 -5.692 0.541 12.934 Atomic orbital electron populations 1.23596 0.74678 1.05916 1.02501 1.86505 1.25208 1.32230 1.83830 1.23702 0.91898 0.81349 0.71102 1.90646 1.67791 1.37423 1.46689 1.21615 0.87155 1.00077 1.06511 1.21211 0.80489 0.94151 1.03997 1.43493 1.05428 1.59514 1.04572 1.19777 1.05976 1.35646 0.87169 0.88237 1.26293 0.96707 0.92308 1.04167 1.69996 1.27011 1.20559 1.33575 0.85134 0.78221 0.79873 0.76518 1.19714 1.20070 1.17606 1.15431 0.83483 0.82995 0.84189 1.90695 1.69571 1.58536 1.32302 1.20737 0.92525 1.03270 1.00074 1.19170 0.91013 0.97129 1.00915 1.15666 0.85025 0.99629 0.98672 1.21320 0.91980 0.98331 0.97012 1.20254 0.93844 0.97159 0.99453 1.20256 0.83166 0.98253 0.98680 1.19527 0.92485 0.94671 0.95811 1.20076 0.90920 0.99205 0.99970 1.87378 1.19132 1.50564 1.67139 1.26203 0.84165 0.97157 0.83170 1.87310 1.23046 1.74784 1.37770 0.92107 0.84369 0.92028 0.87597 0.86032 0.87407 0.93664 0.91145 0.81725 0.80591 0.85005 0.87547 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -11.14 10.57 -51.42 -0.54 -11.68 16 3 C 0.48 18.03 7.96 71.24 0.57 18.59 16 4 O -0.54 -23.40 15.73 21.96 0.35 -23.05 16 5 C -0.12 -4.58 6.14 29.85 0.18 -4.39 16 6 C 0.12 6.14 4.25 86.38 0.37 6.51 16 7 N -0.42 -21.36 2.54 -643.92 -1.63 -23.00 16 8 C -0.36 -17.97 8.65 84.13 0.73 -17.24 16 9 H 0.10 4.84 7.39 -2.91 -0.02 4.82 16 10 C 0.01 0.52 4.97 84.97 0.42 0.94 16 11 N -0.88 -45.95 11.26 21.69 0.24 -45.70 16 12 Si 0.98 37.91 29.61 68.60 2.03 39.94 16 13 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 14 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 15 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 16 C 0.55 28.67 7.48 85.49 0.64 29.31 16 17 O -0.62 -34.82 16.73 -4.61 -0.08 -34.90 16 18 C -0.16 -7.63 12.03 30.02 0.36 -7.27 16 19 C -0.08 -3.12 13.24 30.01 0.40 -2.72 16 20 C 0.01 0.32 5.75 -21.18 -0.12 0.20 16 21 C -0.07 -1.57 9.76 22.57 0.22 -1.35 16 22 C -0.09 -1.71 10.04 22.30 0.22 -1.48 16 23 C 0.04 0.94 7.16 22.76 0.16 1.10 16 24 C 0.02 0.51 7.13 22.56 0.16 0.67 16 25 C -0.08 -2.50 9.78 22.66 0.22 -2.28 16 26 O -0.33 -7.87 11.41 -76.52 -0.87 -8.75 16 27 C 0.20 3.03 8.88 113.37 1.01 4.04 16 28 O -0.31 -6.21 11.39 -74.82 -0.85 -7.06 16 29 H 0.06 1.38 8.13 -2.38 -0.02 1.36 16 30 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 32 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 33 H 0.12 4.45 8.14 -2.39 -0.02 4.43 16 34 H 0.11 5.69 5.24 -2.39 -0.01 5.68 16 35 H 0.04 2.40 7.45 -2.39 -0.02 2.38 16 36 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 37 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 40 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -71.63 373.88 6.47 -65.16 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 1.09 Total: 22.63 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 6.74 Total: 26.41 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.39 Total: -68.70 kcal Atomic # 8 Polarization: -83.44 SS G_CDS: -2.00 Total: -85.44 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -71.63 6.47 -65.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.969 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds