Wall clock time and date at job start Wed Apr 1 2020 04:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00143 * 2 1 4 4 O 1.20827 * 119.99617 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00089 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.46986 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47023 * 180.02562 * 6 5 3 8 8 C 1.36896 * 120.00138 * 264.13107 * 7 6 5 9 9 H 1.08004 * 120.00344 * 136.11289 * 8 7 6 10 10 C 1.39033 * 119.99937 * 316.11763 * 8 7 6 11 11 N 1.31383 * 119.99835 * 347.48048 * 10 8 7 12 12 Si 1.86797 * 120.00385 * 167.48353 * 10 8 7 13 13 H 1.48507 * 109.47279 * 89.99579 * 12 10 8 14 14 H 1.48502 * 109.47442 * 210.00031 * 12 10 8 15 15 H 1.48501 * 109.47042 * 330.00239 * 12 10 8 16 16 C 1.34773 * 120.00388 * 84.13302 * 7 6 5 17 17 O 1.21610 * 119.99910 * 5.63148 * 16 7 6 18 18 C 1.47587 * 120.00634 * 185.63755 * 16 7 6 19 19 C 1.39726 * 120.16455 * 312.63079 * 18 16 7 20 20 C 1.37841 * 119.86400 * 179.71908 * 19 18 16 21 21 C 1.50704 * 119.88526 * 180.29813 * 20 19 18 22 22 F 1.39901 * 109.46936 * 300.25367 * 21 20 19 23 23 F 1.39903 * 109.47294 * 60.25449 * 21 20 19 24 24 C 1.38475 * 120.22780 * 0.55396 * 20 19 18 25 25 C 1.38222 * 120.34595 * 359.72104 * 24 20 19 26 26 C 1.38292 * 120.12700 * 359.97438 * 25 24 20 27 27 F 1.35106 * 120.11259 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.46916 * 60.00227 * 1 2 3 29 29 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47406 * 300.00167 * 1 2 3 31 31 H 1.08999 * 109.46793 * 59.99987 * 5 3 2 32 32 H 1.08996 * 109.47030 * 300.00446 * 5 3 2 33 33 H 1.08999 * 109.47333 * 60.00357 * 6 5 3 34 34 H 1.09005 * 109.47458 * 299.99898 * 6 5 3 35 35 H 0.96999 * 119.99624 * 180.02562 * 11 10 8 36 36 H 1.07998 * 120.06948 * 359.97438 * 19 18 16 37 37 H 1.09003 * 109.46988 * 180.25959 * 21 20 19 38 38 H 1.07993 * 119.82566 * 179.69805 * 24 20 19 39 39 H 1.08006 * 119.93435 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1403 2.9762 1.1790 9 1 7.0260 2.3902 1.3756 10 6 5.6879 3.8904 2.1237 11 7 4.7700 4.7721 1.7976 12 14 6.3851 3.8654 3.8565 13 1 7.5709 4.7567 3.9260 14 1 5.3525 4.3398 4.8125 15 1 6.7863 2.4797 4.2087 16 6 6.1423 2.7342 -1.1612 17 8 5.5398 2.6975 -2.2169 18 6 7.6174 2.6861 -1.1515 19 6 8.3444 3.5941 -0.3773 20 6 9.7217 3.5399 -0.3683 21 6 10.5061 4.5147 0.4717 22 9 10.2160 5.8210 0.0633 23 9 10.1558 4.3581 1.8171 24 6 10.3872 2.5963 -1.1326 25 6 9.6773 1.6974 -1.9062 26 6 8.2949 1.7347 -1.9212 27 9 7.6013 0.8563 -2.6779 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 3.6101 3.2367 0.8893 34 1 3.6108 3.2356 -0.8907 35 1 4.4547 5.4102 2.4566 36 1 7.8281 4.3343 0.2160 37 1 11.5723 4.3241 0.3492 38 1 11.4666 2.5628 -1.1245 39 1 10.2032 0.9644 -2.5001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871346714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:58 Heat of formation + Delta-G solvation = -235.414377 kcal Electronic energy + Delta-G solvation = -30847.802441 eV Core-core repulsion = 25920.243125 eV Total energy + Delta-G solvation = -4927.559315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.74370 -48.55091 -46.73322 -40.10099 -39.39239 -37.88907 -36.20121 -35.05622 -32.18717 -31.66736 -31.32344 -30.17609 -27.52847 -25.72164 -25.17990 -24.45432 -22.81630 -21.55234 -20.32880 -19.45684 -18.10813 -17.44203 -17.24520 -17.05349 -16.96864 -16.29412 -16.27132 -16.16663 -15.79346 -15.65215 -15.19409 -14.62239 -14.43732 -13.88421 -13.70196 -13.64696 -13.57629 -13.46322 -13.15069 -13.10287 -12.72745 -12.69133 -12.26035 -12.18943 -12.14147 -11.91748 -11.73810 -11.30176 -11.14156 -11.11665 -10.87105 -10.80806 -10.56595 -10.46191 -10.16503 -10.05288 -9.29123 -8.88144 -8.68583 -8.53522 -7.67042 -6.50543 -4.31901 1.07079 1.37771 2.63507 3.00227 3.08901 3.18217 3.19973 3.39333 3.86360 3.97943 3.99851 4.26546 4.36614 4.56280 4.71015 4.85318 5.01880 5.14025 5.22353 5.22780 5.26588 5.29338 5.55303 5.60561 5.63718 5.76969 5.88206 6.00379 6.08228 6.21404 6.28185 6.48886 6.59981 6.69576 6.79303 7.01027 7.20865 7.32985 7.74585 8.14339 8.18834 8.88313 9.22173 9.67594 10.51079 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011223 B = 0.004370 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.234930 B = 6405.733154 C = 8197.924488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.127 4.127 6 C 0.133 3.867 7 N -0.424 5.424 8 C -0.356 4.356 9 H 0.091 0.909 10 C 0.052 3.948 11 N -0.851 5.851 12 Si 0.909 3.091 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.266 1.266 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.123 4.123 19 C 0.011 3.989 20 C -0.206 4.206 21 C 0.319 3.681 22 F -0.200 7.200 23 F -0.196 7.196 24 C -0.053 4.053 25 C -0.175 4.175 26 C 0.150 3.850 27 F -0.126 7.126 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.275 0.725 36 H 0.160 0.840 37 H 0.114 0.886 38 H 0.135 0.865 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 -6.127 -0.783 9.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.166 4.166 6 C 0.009 3.991 7 N -0.141 5.141 8 C -0.483 4.483 9 H 0.109 0.891 10 C -0.157 4.157 11 N -0.485 5.485 12 Si 0.735 3.265 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.190 1.190 16 C 0.301 3.699 17 O -0.468 6.468 18 C -0.127 4.127 19 C -0.008 4.008 20 C -0.207 4.207 21 C 0.265 3.735 22 F -0.182 7.182 23 F -0.177 7.177 24 C -0.072 4.072 25 C -0.193 4.193 26 C 0.130 3.870 27 F -0.104 7.104 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.177 0.823 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.699 -5.663 -1.186 8.851 hybrid contribution -0.123 -0.055 0.930 0.940 sum 6.576 -5.718 -0.256 8.718 Atomic orbital electron populations 1.23173 0.77293 1.03057 1.02365 1.86537 1.22797 1.34351 1.84641 1.23996 0.92287 0.80927 0.71784 1.90658 1.67235 1.36202 1.45004 1.21916 0.86128 1.03227 1.05327 1.21153 0.81710 0.90790 1.05400 1.43186 1.04517 1.61435 1.04949 1.19408 1.12577 1.22306 0.94042 0.89116 1.25498 0.96250 0.93600 1.00305 1.69859 1.27890 1.15481 1.35231 0.86185 0.79161 0.79413 0.81786 1.19270 1.20578 1.19039 1.18100 0.85802 0.81431 0.84594 1.90692 1.69509 1.55558 1.31059 1.20125 0.95914 0.97457 0.99232 1.21409 0.91726 0.95944 0.91693 1.20324 0.95103 1.01209 1.04054 1.20263 0.98563 0.78157 0.76480 1.93019 1.95410 1.39443 1.90285 1.93050 1.94153 1.95413 1.35123 1.20705 0.99690 0.92923 0.93875 1.20868 0.91676 1.02810 1.03980 1.17855 0.89513 0.88515 0.91140 1.91530 1.79598 1.66192 1.73065 0.92151 0.88598 0.92132 0.88356 0.87673 0.86792 0.91398 0.91473 0.82294 0.86830 0.84752 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.97 10.57 -39.25 -0.41 -6.39 16 3 C 0.47 8.94 7.96 36.00 0.29 9.23 16 4 O -0.50 -10.93 15.73 -18.75 -0.29 -11.22 16 5 C -0.13 -2.51 6.09 -27.88 -0.17 -2.68 16 6 C 0.13 3.15 4.18 -4.05 -0.02 3.13 16 7 N -0.42 -10.26 2.49 -115.98 -0.29 -10.55 16 8 C -0.36 -8.46 6.54 -15.00 -0.10 -8.56 16 9 H 0.09 2.10 6.91 -52.48 -0.36 1.74 16 10 C 0.05 1.25 5.07 -17.45 -0.09 1.16 16 11 N -0.85 -21.81 11.48 55.50 0.64 -21.17 16 12 Si 0.91 18.95 29.57 -169.99 -5.03 13.92 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 16 C 0.51 12.42 6.97 -12.45 -0.09 12.34 16 17 O -0.58 -15.51 16.21 5.27 0.09 -15.42 16 18 C -0.12 -2.55 5.15 -104.91 -0.54 -3.09 16 19 C 0.01 0.21 7.52 -39.17 -0.29 -0.09 16 20 C -0.21 -3.08 5.37 -104.68 -0.56 -3.64 16 21 C 0.32 4.22 5.45 36.01 0.20 4.42 16 22 F -0.20 -3.08 17.25 2.25 0.04 -3.04 16 23 F -0.20 -3.14 17.26 2.25 0.04 -3.11 16 24 C -0.05 -0.65 9.66 -39.50 -0.38 -1.03 16 25 C -0.17 -2.37 10.01 -39.57 -0.40 -2.76 16 26 C 0.15 2.72 7.25 -38.95 -0.28 2.43 16 27 F -0.13 -2.42 16.46 2.25 0.04 -2.39 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 31 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 33 H 0.11 2.90 5.73 -51.93 -0.30 2.60 16 34 H 0.07 1.73 7.49 -51.93 -0.39 1.34 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.16 3.41 6.75 -52.49 -0.35 3.06 16 37 H 0.11 0.94 7.87 -51.93 -0.41 0.53 16 38 H 0.13 1.03 7.94 -52.49 -0.42 0.61 16 39 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -30.91 355.84 -5.09 -36.00 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.90 Total: 5.64 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -1.37 Total: 12.37 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.35 Total: -31.72 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.62 Total: -33.03 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.11 Total: -8.54 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.91 -5.09 -36.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.415 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds