Wall clock time and date at job start Wed Apr 1 2020 03:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47053 * 2 1 4 4 C 1.54807 * 109.46866 * 240.00391 * 2 1 3 5 5 N 1.45121 * 109.54638 * 172.12016 * 4 2 1 6 6 S 1.65605 * 118.75700 * 269.26642 * 5 4 2 7 7 O 1.42100 * 104.27692 * 206.06723 * 6 5 4 8 8 O 1.42098 * 104.27802 * 333.92826 * 6 5 4 9 9 C 1.81400 * 104.45031 * 90.00053 * 6 5 4 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 6 5 11 11 C 1.50710 * 109.47046 * 179.97438 * 10 9 6 12 12 H 1.08001 * 119.99627 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99657 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00427 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99563 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47273 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47023 * 120.00358 * 15 13 11 18 18 H 1.48497 * 109.47154 * 240.00316 * 15 13 11 19 19 C 1.47504 * 122.48660 * 89.28449 * 5 4 2 20 20 C 1.53570 * 111.02378 * 318.37964 * 19 5 4 21 21 C 1.51534 * 109.58279 * 320.01804 * 20 19 5 22 22 H 1.09003 * 109.70793 * 331.54897 * 21 20 19 23 23 C 1.53002 * 109.59303 * 211.19180 * 21 20 19 24 24 F 1.39907 * 109.46916 * 300.72875 * 23 21 20 25 25 F 1.39902 * 109.47403 * 60.72242 * 23 21 20 26 26 F 1.39891 * 109.47699 * 180.72575 * 23 21 20 27 27 O 1.38015 * 109.46906 * 119.99953 * 2 1 3 28 28 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46784 * 299.99538 * 1 2 3 30 30 H 1.09004 * 109.47035 * 59.99164 * 1 2 3 31 31 H 1.09001 * 109.46195 * 292.14443 * 4 2 1 32 32 H 1.09004 * 109.45809 * 52.09733 * 4 2 1 33 33 H 1.09004 * 109.46835 * 299.99973 * 9 6 5 34 34 H 1.08996 * 109.47165 * 59.99322 * 9 6 5 35 35 H 1.08997 * 109.46732 * 299.99157 * 10 9 6 36 36 H 1.09000 * 109.47289 * 60.00186 * 10 9 6 37 37 H 0.97002 * 120.00352 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.17238 * 197.97623 * 19 5 4 39 39 H 1.09002 * 109.16763 * 78.77130 * 19 5 4 40 40 H 1.09002 * 109.45454 * 199.98161 * 20 19 5 41 41 H 1.08998 * 109.45799 * 80.05139 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0460 -0.7297 -1.2641 5 7 3.4850 -0.5704 -1.3632 6 16 4.0874 0.7192 -2.2097 7 8 5.3691 0.2856 -2.6437 8 8 3.0647 1.0331 -3.1449 9 6 4.2463 2.0374 -0.9737 10 6 4.7997 3.2981 -1.6410 11 6 4.9312 4.3935 -0.6143 12 1 4.6479 4.2090 0.4114 13 6 5.4130 5.6311 -0.9845 14 7 5.7575 5.8559 -2.2336 15 14 5.5753 6.9891 0.2880 16 1 5.1240 6.4851 1.6099 17 1 6.9950 7.4147 0.3793 18 1 4.7363 8.1466 -0.1137 19 6 4.4314 -1.5140 -0.7389 20 6 3.9598 -1.9192 0.6653 21 6 3.3880 -0.7101 1.3775 22 1 3.8651 0.1962 1.0043 23 6 3.6344 -0.8369 2.8823 24 9 3.0267 -2.0040 3.3575 25 9 5.0107 -0.8952 3.1262 26 9 3.0910 0.2724 3.5390 27 8 1.9900 -0.6506 1.1269 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.8018 -1.7898 -1.1965 32 1 1.5717 -0.3037 -2.1483 33 1 3.2677 2.2534 -0.5450 34 1 4.9256 1.7155 -0.1845 35 1 5.7783 3.0824 -2.0699 36 1 4.1200 3.6199 -2.4300 37 1 6.0962 6.7267 -2.4942 38 1 5.4111 -1.0421 -0.6652 39 1 4.5105 -2.4057 -1.3609 40 1 4.8043 -2.3093 1.2334 41 1 3.1921 -2.6884 0.5826 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872608835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:34 Heat of formation + Delta-G solvation = -271.645846 kcal Electronic energy + Delta-G solvation = -30939.584182 eV Core-core repulsion = 26145.897703 eV Total energy + Delta-G solvation = -4793.686478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.26702 -47.79643 -47.70515 -40.23662 -36.90674 -36.08176 -35.55340 -34.41942 -33.99673 -31.28950 -30.49532 -28.62820 -26.30536 -25.72182 -23.76085 -22.32599 -21.63812 -21.21618 -18.92779 -18.71973 -18.57078 -18.13842 -17.84865 -17.05422 -16.69199 -16.54054 -15.71125 -15.34776 -14.81130 -14.65986 -14.59524 -14.57948 -14.43509 -14.16119 -13.92563 -13.86634 -13.77888 -13.55596 -13.32619 -13.21979 -12.79224 -12.60413 -12.40081 -12.05160 -11.95623 -11.87472 -11.78928 -11.74770 -11.48220 -11.20350 -11.16758 -11.07351 -10.84417 -10.51719 -10.47251 -10.10426 -9.83973 -9.36925 -8.94509 -8.56459 -6.18387 -4.24427 0.54266 2.22369 2.74939 3.00247 3.22107 3.29947 3.33309 3.53074 3.74130 4.08999 4.14549 4.27150 4.32449 4.40108 4.47528 4.59288 4.69091 4.80290 4.86751 4.92494 5.03513 5.17213 5.33635 5.42254 5.48079 5.50250 5.51796 5.56072 5.63030 5.77526 5.83182 5.97403 6.34378 6.46503 7.00773 7.20129 7.25617 7.74464 8.09536 8.79062 9.41203 10.92565 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004625 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.613641 B = 6053.062064 C = 7310.022928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 H 0.062 0.938 4 C 0.077 3.923 5 N -1.009 6.009 6 S 2.580 3.420 7 O -0.958 6.958 8 O -0.958 6.958 9 C -0.596 4.596 10 C 0.031 3.969 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.124 3.876 20 C -0.160 4.160 21 C 0.061 3.939 22 H 0.105 0.895 23 C 0.460 3.540 24 F -0.176 7.176 25 F -0.174 7.174 26 F -0.175 7.175 27 O -0.362 6.362 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -17.298 7.294 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.080 0.920 4 C -0.049 4.049 5 N -0.844 5.844 6 S 2.679 3.321 7 O -0.949 6.949 8 O -0.948 6.948 9 C -0.729 4.729 10 C -0.008 4.008 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.001 4.001 20 C -0.199 4.199 21 C 0.001 3.999 22 H 0.123 0.877 23 C 0.406 3.594 24 F -0.157 7.157 25 F -0.155 7.155 26 F -0.156 7.156 27 O -0.281 6.281 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.535 -17.336 6.368 19.946 hybrid contribution 0.337 1.128 1.428 1.850 sum -7.198 -16.208 7.796 19.372 Atomic orbital electron populations 1.21737 0.91068 1.03419 1.03576 1.22425 0.96079 0.95436 0.84711 0.92031 1.22342 0.79812 1.03335 0.99416 1.57732 1.12628 1.42512 1.71548 1.06091 0.74070 0.75170 0.76807 1.93553 1.41550 1.79926 1.79846 1.93533 1.58260 1.84155 1.58861 1.30666 1.10036 1.16129 1.16044 1.18960 0.96827 0.88410 0.96642 1.21012 1.44346 0.95677 0.95013 0.91979 1.25052 0.94991 0.98751 0.95550 1.69955 1.42965 1.23462 1.16364 0.86428 0.77953 0.81645 0.81390 1.19584 1.20729 1.20724 1.21562 0.91872 0.94543 0.92140 1.22494 1.03129 0.97616 0.96708 1.22703 0.85785 1.02552 0.88837 0.87689 1.20337 0.74075 0.74210 0.90821 1.93194 1.83157 1.49097 1.90269 1.93212 1.30972 1.96147 1.95210 1.93223 1.85706 1.53212 1.83444 1.86223 1.19468 1.77145 1.45245 0.91341 0.91135 0.89886 0.88981 0.87326 0.86257 0.86396 0.94763 0.94742 0.92507 0.88766 0.90106 0.88423 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.55 37.16 0.36 -0.83 16 2 C 0.07 0.77 3.26 -25.78 -0.08 0.69 16 3 H 0.06 0.71 6.29 -51.93 -0.33 0.38 16 4 C 0.08 0.81 5.07 -3.83 -0.02 0.79 16 5 N -1.01 -12.39 2.42 -113.25 -0.27 -12.66 16 6 S 2.58 43.81 5.32 -107.50 -0.57 43.24 16 7 O -0.96 -18.74 16.73 -57.54 -0.96 -19.70 16 8 O -0.96 -18.52 16.42 -57.54 -0.94 -19.46 16 9 C -0.60 -10.82 5.49 37.16 0.20 -10.61 16 10 C 0.03 0.75 4.98 -27.88 -0.14 0.62 16 11 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 15 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 C 0.12 1.24 5.95 -3.20 -0.02 1.22 16 20 C -0.16 -1.38 4.98 -27.18 -0.14 -1.51 16 21 C 0.06 0.65 2.16 -27.47 -0.06 0.59 16 22 H 0.11 1.16 6.22 -51.93 -0.32 0.84 16 23 C 0.46 5.24 2.79 37.16 0.10 5.34 16 24 F -0.18 -1.99 16.96 2.25 0.04 -1.95 16 25 F -0.17 -1.96 16.54 2.25 0.04 -1.92 16 26 F -0.17 -2.29 17.26 2.25 0.04 -2.25 16 27 O -0.36 -4.00 9.00 -26.53 -0.24 -4.24 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 32 H 0.11 1.19 6.74 -51.93 -0.35 0.84 16 33 H 0.12 1.94 6.37 -51.92 -0.33 1.61 16 34 H 0.12 1.90 7.55 -51.93 -0.39 1.51 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.09 0.96 7.25 -51.93 -0.38 0.59 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.70 7.21 -51.93 -0.37 0.32 16 41 H 0.10 0.75 8.01 -51.93 -0.42 0.34 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -33.39 352.26 -7.45 -40.84 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.39 Total: -1.40 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -0.20 Total: -16.50 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.46 Total: -37.89 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -2.15 Total: -43.41 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.11 Total: -6.12 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 43.81 SS G_CDS: -0.57 Total: 43.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.39 -7.45 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872608835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.809 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds