Wall clock time and date at job start Wed Apr 1 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47053 * 2 1 4 4 C 1.54807 * 109.46866 * 240.00391 * 2 1 3 5 5 N 1.45121 * 109.54638 * 172.12016 * 4 2 1 6 6 S 1.65605 * 118.75700 * 269.26642 * 5 4 2 7 7 O 1.42100 * 104.27692 * 206.06723 * 6 5 4 8 8 O 1.42098 * 104.27802 * 333.92826 * 6 5 4 9 9 C 1.81400 * 104.45031 * 90.00053 * 6 5 4 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 6 5 11 11 C 1.50710 * 109.47046 * 179.97438 * 10 9 6 12 12 H 1.08001 * 119.99627 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99657 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00427 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99563 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47273 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47023 * 120.00358 * 15 13 11 18 18 H 1.48497 * 109.47154 * 240.00316 * 15 13 11 19 19 C 1.47504 * 122.48660 * 89.28449 * 5 4 2 20 20 C 1.53570 * 111.02378 * 318.37964 * 19 5 4 21 21 C 1.51534 * 109.58279 * 320.01804 * 20 19 5 22 22 H 1.09003 * 109.70793 * 331.54897 * 21 20 19 23 23 C 1.53002 * 109.59303 * 211.19180 * 21 20 19 24 24 F 1.39907 * 109.46916 * 300.72875 * 23 21 20 25 25 F 1.39902 * 109.47403 * 60.72242 * 23 21 20 26 26 F 1.39891 * 109.47699 * 180.72575 * 23 21 20 27 27 O 1.38015 * 109.46906 * 119.99953 * 2 1 3 28 28 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46784 * 299.99538 * 1 2 3 30 30 H 1.09004 * 109.47035 * 59.99164 * 1 2 3 31 31 H 1.09001 * 109.46195 * 292.14443 * 4 2 1 32 32 H 1.09004 * 109.45809 * 52.09733 * 4 2 1 33 33 H 1.09004 * 109.46835 * 299.99973 * 9 6 5 34 34 H 1.08996 * 109.47165 * 59.99322 * 9 6 5 35 35 H 1.08997 * 109.46732 * 299.99157 * 10 9 6 36 36 H 1.09000 * 109.47289 * 60.00186 * 10 9 6 37 37 H 0.97002 * 120.00352 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.17238 * 197.97623 * 19 5 4 39 39 H 1.09002 * 109.16763 * 78.77130 * 19 5 4 40 40 H 1.09002 * 109.45454 * 199.98161 * 20 19 5 41 41 H 1.08998 * 109.45799 * 80.05139 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0460 -0.7297 -1.2641 5 7 3.4850 -0.5704 -1.3632 6 16 4.0874 0.7192 -2.2097 7 8 5.3691 0.2856 -2.6437 8 8 3.0647 1.0331 -3.1449 9 6 4.2463 2.0374 -0.9737 10 6 4.7997 3.2981 -1.6410 11 6 4.9312 4.3935 -0.6143 12 1 4.6479 4.2090 0.4114 13 6 5.4130 5.6311 -0.9845 14 7 5.7575 5.8559 -2.2336 15 14 5.5753 6.9891 0.2880 16 1 5.1240 6.4851 1.6099 17 1 6.9950 7.4147 0.3793 18 1 4.7363 8.1466 -0.1137 19 6 4.4314 -1.5140 -0.7389 20 6 3.9598 -1.9192 0.6653 21 6 3.3880 -0.7101 1.3775 22 1 3.8651 0.1962 1.0043 23 6 3.6344 -0.8369 2.8823 24 9 3.0267 -2.0040 3.3575 25 9 5.0107 -0.8952 3.1262 26 9 3.0910 0.2724 3.5390 27 8 1.9900 -0.6506 1.1269 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.8018 -1.7898 -1.1965 32 1 1.5717 -0.3037 -2.1483 33 1 3.2677 2.2534 -0.5450 34 1 4.9256 1.7155 -0.1845 35 1 5.7783 3.0824 -2.0699 36 1 4.1200 3.6199 -2.4300 37 1 6.0962 6.7267 -2.4942 38 1 5.4111 -1.0421 -0.6652 39 1 4.5105 -2.4057 -1.3609 40 1 4.8043 -2.3093 1.2334 41 1 3.1921 -2.6884 0.5826 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872608835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:33 Heat of formation + Delta-G solvation = -294.537210 kcal Electronic energy + Delta-G solvation = -30940.576826 eV Core-core repulsion = 26145.897703 eV Total energy + Delta-G solvation = -4794.679123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.16727 -48.70287 -48.61524 -41.06954 -38.35985 -37.21155 -36.82347 -35.94198 -35.22187 -33.19713 -31.28672 -29.47178 -27.70076 -27.09030 -24.64744 -23.81915 -22.48703 -22.40984 -20.07029 -19.64237 -19.48091 -19.30012 -18.96398 -18.47430 -18.00723 -17.43013 -17.19540 -16.64302 -16.56807 -15.68823 -15.59661 -15.50080 -15.37654 -15.22036 -15.07082 -14.82527 -14.78352 -14.60530 -14.45996 -14.13839 -14.07026 -13.79258 -13.69164 -13.29610 -13.23125 -13.13611 -12.99586 -12.86313 -12.75844 -12.73786 -12.38754 -12.33708 -12.18226 -12.00471 -11.87162 -11.63036 -11.24729 -10.86429 -10.67686 -9.99446 -8.28729 -6.42392 -0.83482 1.37199 1.38992 1.39493 1.52350 1.58134 2.16078 2.35493 2.68122 2.72279 2.88780 3.04174 3.05463 3.30829 3.47736 3.59996 3.73704 3.83210 3.87386 3.98047 4.03595 4.15802 4.21098 4.31010 4.65284 4.69381 4.75436 4.81388 4.84967 4.88287 5.02316 5.06122 5.22058 5.23185 5.32545 5.55054 5.65591 6.03024 6.19518 6.70957 7.28147 8.83593 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004625 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.613641 B = 6053.062064 C = 7310.022928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 H 0.047 0.953 4 C 0.074 3.926 5 N -0.996 5.996 6 S 2.604 3.396 7 O -0.986 6.986 8 O -0.984 6.984 9 C -0.598 4.598 10 C 0.025 3.975 11 C -0.537 4.537 12 H 0.073 0.927 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.114 3.886 20 C -0.151 4.151 21 C 0.054 3.946 22 H 0.099 0.901 23 C 0.460 3.540 24 F -0.174 7.174 25 F -0.174 7.174 26 F -0.188 7.188 27 O -0.365 6.365 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.268 0.732 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -18.853 8.888 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.052 4.052 5 N -0.834 5.834 6 S 2.701 3.299 7 O -0.976 6.976 8 O -0.974 6.974 9 C -0.729 4.729 10 C -0.014 4.014 11 C -0.576 4.576 12 H 0.091 0.909 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.182 1.182 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.009 4.009 20 C -0.190 4.190 21 C -0.006 4.006 22 H 0.117 0.883 23 C 0.406 3.594 24 F -0.155 7.155 25 F -0.155 7.155 26 F -0.169 7.169 27 O -0.284 6.284 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.122 0.878 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.340 -18.884 7.978 22.132 hybrid contribution 0.557 1.513 0.951 1.872 sum -7.783 -17.371 8.929 21.025 Atomic orbital electron populations 1.21766 0.89431 1.04564 1.03858 1.22519 0.97387 0.94610 0.84578 0.93512 1.22568 0.78206 1.05184 0.99228 1.57375 1.13862 1.40855 1.71296 1.05091 0.73141 0.75305 0.76360 1.93512 1.43211 1.80376 1.80499 1.93492 1.58864 1.84955 1.60100 1.30598 1.11103 1.14299 1.16938 1.18779 0.95254 0.91208 0.96137 1.21497 1.43718 0.96507 0.95903 0.90923 1.26037 0.94653 1.01587 0.97565 1.70088 1.44213 1.24275 1.18578 0.85342 0.78019 0.78330 0.79068 1.18212 1.20291 1.20241 1.21873 0.91149 0.94610 0.93301 1.22484 1.04183 0.96889 0.95418 1.22836 0.85903 1.03399 0.88443 0.88330 1.20450 0.73981 0.73855 0.91105 1.93196 1.83138 1.48896 1.90316 1.93213 1.30931 1.96120 1.95256 1.93197 1.85933 1.53975 1.83798 1.86234 1.19601 1.77076 1.45447 0.89778 0.91351 0.89157 0.85922 0.87819 0.84490 0.84406 0.97371 0.97334 0.92330 0.89135 0.87857 0.86623 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.55 71.98 0.69 -1.34 16 2 C 0.07 1.31 3.26 31.21 0.10 1.41 16 3 H 0.05 1.03 6.29 -2.39 -0.02 1.01 16 4 C 0.07 1.37 5.07 87.25 0.44 1.81 16 5 N -1.00 -22.54 2.42 -512.20 -1.24 -23.78 16 6 S 2.60 88.01 5.32 -56.49 -0.30 87.71 16 7 O -0.99 -38.64 16.73 -127.65 -2.14 -40.77 16 8 O -0.98 -38.29 16.42 -127.65 -2.10 -40.39 16 9 C -0.60 -21.83 5.49 71.98 0.40 -21.44 16 10 C 0.02 1.28 4.98 29.85 0.15 1.42 16 11 C -0.54 -29.32 9.11 25.60 0.23 -29.08 16 12 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16 15 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 19 C 0.11 1.98 5.95 86.38 0.51 2.49 16 20 C -0.15 -2.09 4.98 30.31 0.15 -1.94 16 21 C 0.05 1.03 2.16 30.11 0.07 1.10 16 22 H 0.10 2.01 6.22 -2.39 -0.01 1.99 16 23 C 0.46 9.60 2.79 71.98 0.20 9.80 16 24 F -0.17 -3.53 16.96 44.97 0.76 -2.77 16 25 F -0.17 -3.59 16.54 44.97 0.74 -2.84 16 26 F -0.19 -4.69 17.26 44.97 0.78 -3.91 16 27 O -0.36 -7.19 9.00 -117.86 -1.06 -8.25 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.12 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.10 2.09 6.74 -2.38 -0.02 2.08 16 33 H 0.14 4.44 6.37 -2.39 -0.02 4.42 16 34 H 0.14 4.38 7.55 -2.39 -0.02 4.36 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.09 1.67 7.25 -2.39 -0.02 1.66 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.12 1.25 7.21 -2.39 -0.02 1.23 16 41 H 0.11 1.27 8.01 -2.39 -0.02 1.25 16 Total: -1.00 -73.00 352.26 2.22 -70.78 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.06 Total: 10.09 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 3.40 Total: -35.28 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -0.96 Total: -79.43 kcal Atomic # 8 Polarization: -84.11 SS G_CDS: -5.29 Total: -89.41 kcal Atomic # 9 Polarization: -11.81 SS G_CDS: 2.28 Total: -9.52 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 88.01 SS G_CDS: -0.30 Total: 87.71 kcal Total: -73.00 2.22 -70.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872608835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.759 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -296.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -294.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds