Wall clock time and date at job start Wed Apr 1 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47453 * 2 1 4 4 C 1.50700 * 109.46996 * 239.99800 * 2 1 3 5 5 H 1.08000 * 120.00312 * 240.00330 * 4 2 1 6 6 C 1.37884 * 119.99965 * 60.00134 * 4 2 1 7 7 N 1.31518 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47218 * 59.99910 * 8 6 4 10 10 H 1.48498 * 109.47225 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46957 * 299.99989 * 8 6 4 12 12 N 1.46499 * 109.47078 * 120.00101 * 2 1 3 13 13 C 1.46506 * 119.99936 * 59.99567 * 12 2 1 14 14 S 1.65597 * 119.99926 * 240.27528 * 12 2 1 15 15 O 1.42095 * 106.40469 * 23.26116 * 14 12 2 16 16 O 1.42098 * 106.40441 * 156.18457 * 14 12 2 17 17 N 1.65602 * 107.21619 * 269.72326 * 14 12 2 18 18 C 1.47025 * 125.64773 * 269.69184 * 17 14 12 19 19 C 1.54331 * 107.26436 * 178.84953 * 18 17 14 20 20 C 1.55163 * 103.02166 * 338.14230 * 19 18 17 21 21 H 1.08997 * 111.03116 * 277.21446 * 20 19 18 22 22 C 1.50700 * 111.00259 * 153.38052 * 20 19 18 23 23 N 1.29023 * 124.91865 * 307.50120 * 22 20 19 24 24 C 1.31785 * 117.12240 * 179.81663 * 23 22 20 25 25 C 1.33637 * 114.50342 * 0.46958 * 24 23 22 26 26 S 1.70981 * 124.91366 * 127.80424 * 22 20 19 27 27 C 1.47423 * 125.64783 * 89.99938 * 17 14 12 28 28 H 1.08996 * 109.47248 * 59.99675 * 1 2 3 29 29 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46932 * 300.00026 * 1 2 3 31 31 H 0.96995 * 119.99381 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 90.00398 * 13 12 2 33 33 H 1.09000 * 109.46803 * 209.99571 * 13 12 2 34 34 H 1.09000 * 109.47214 * 330.00364 * 13 12 2 35 35 H 1.08996 * 109.88312 * 298.39522 * 18 17 14 36 36 H 1.08994 * 109.88381 * 59.55996 * 18 17 14 37 37 H 1.08998 * 110.85153 * 219.67075 * 19 18 17 38 38 H 1.09008 * 110.67046 * 96.52198 * 19 18 17 39 39 H 1.08004 * 122.74457 * 180.22447 * 24 23 22 40 40 H 1.07994 * 126.03900 * 179.79036 * 25 24 23 41 41 H 1.08993 * 110.36757 * 322.92974 * 27 17 14 42 42 H 1.09005 * 110.36657 * 85.25459 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8258 -0.4207 -5.2205 11 1 3.8063 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9647 0.1161 2.2896 15 8 2.6845 1.4988 2.1198 16 8 2.8119 -0.5613 3.5294 17 7 4.5404 -0.1017 1.8289 18 6 5.4185 -1.1956 2.2693 19 6 6.7772 -1.0050 1.5625 20 6 6.4123 -0.1315 0.3331 21 1 6.0322 -0.7450 -0.4837 22 6 7.5937 0.6892 -0.1161 23 7 8.2917 1.4591 0.6486 24 6 9.2975 2.1052 0.0938 25 6 9.4506 1.8746 -1.2136 26 16 8.1986 0.7405 -1.7145 27 6 5.2968 0.7727 0.9142 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7087 1.1612 -3.4844 32 1 2.4156 -2.7378 0.9717 33 1 1.6238 -2.2852 2.5002 34 1 0.6903 -2.3002 0.9846 35 1 5.5514 -1.1520 3.3502 36 1 4.9864 -2.1550 1.9853 37 1 7.1878 -1.9638 1.2461 38 1 7.4790 -0.4821 2.2124 39 1 9.9425 2.7698 0.6494 40 1 10.2083 2.3066 -1.8505 41 1 4.6499 1.1372 0.1163 42 1 5.7327 1.6083 1.4620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882635169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:40 Heat of formation + Delta-G solvation = -20.364258 kcal Electronic energy + Delta-G solvation = -27206.510303 eV Core-core repulsion = 23440.622574 eV Total energy + Delta-G solvation = -3765.887729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.95244 -38.04148 -36.70414 -36.14423 -35.24934 -32.61574 -32.19824 -29.67899 -29.08059 -28.58783 -25.57295 -25.16793 -25.15359 -22.44340 -21.71870 -20.68782 -19.39928 -18.56947 -18.10919 -17.20948 -16.91059 -16.41227 -15.90913 -15.51179 -15.06023 -14.65244 -14.50835 -14.12115 -13.75193 -13.48391 -13.31430 -13.12172 -12.99594 -12.90046 -12.67333 -11.94635 -11.80046 -11.62499 -11.56965 -11.54774 -11.37423 -11.34272 -11.19412 -11.16809 -11.00932 -10.85766 -10.76390 -10.48292 -10.28642 -10.05176 -9.66896 -9.45712 -9.31799 -8.95930 -8.68178 -8.50549 -7.96324 -6.11442 -4.20101 0.61132 1.15502 1.30758 1.69251 2.74528 3.21985 3.28897 3.29057 3.45398 3.99380 4.12046 4.32623 4.51953 4.68468 4.83616 5.05467 5.06848 5.18683 5.25800 5.35769 5.44596 5.47684 5.66292 5.72965 5.80190 5.98736 6.01488 6.06972 6.16686 6.26059 6.30485 6.41699 6.56101 6.68420 6.83375 6.89377 7.09263 7.48738 7.61495 7.66256 7.76406 8.02757 8.24468 8.83121 9.46203 10.93503 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.005204 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.181850 B = 5379.169008 C = 7405.306317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.989 5.989 13 C 0.100 3.900 14 S 2.794 3.206 15 O -0.975 6.975 16 O -0.993 6.993 17 N -1.017 6.017 18 C 0.126 3.874 19 C -0.110 4.110 20 C -0.029 4.029 21 H 0.111 0.889 22 C 0.068 3.932 23 N -0.473 5.473 24 C 0.041 3.959 25 C -0.270 4.270 26 S 0.131 5.869 27 C 0.143 3.857 28 H 0.093 0.907 29 H 0.033 0.967 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.088 0.912 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.417 -2.942 3.191 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.046 4.046 14 S 2.805 3.195 15 O -0.959 6.959 16 O -0.978 6.978 17 N -0.855 5.855 18 C 0.000 4.000 19 C -0.151 4.151 20 C -0.053 4.053 21 H 0.129 0.871 22 C -0.210 4.210 23 N -0.187 5.187 24 C -0.111 4.111 25 C -0.409 4.409 26 S 0.387 5.613 27 C 0.016 3.984 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.191 0.809 40 H 0.192 0.808 41 H 0.107 0.893 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.525 -2.726 3.437 14.218 hybrid contribution 1.089 -0.045 -1.002 1.481 sum 14.614 -2.771 2.435 15.072 Atomic orbital electron populations 1.22069 0.98024 0.99627 1.00839 1.18734 0.91863 0.92662 0.80326 0.92446 1.21329 1.31921 1.13035 0.90074 0.92008 1.24920 0.94995 0.94956 0.98908 1.69870 1.36116 1.22579 1.23904 0.86640 0.79195 0.79752 0.82290 1.20290 1.21251 1.20175 1.57774 1.64142 1.21467 1.39798 1.21252 1.01784 0.81788 0.99798 1.01478 0.71546 0.73416 0.73037 1.93585 1.83396 1.32142 1.86762 1.93521 1.85679 1.76502 1.42062 1.59190 1.28970 1.36629 1.60711 1.21606 0.89691 0.89860 0.98860 1.22671 0.97163 0.99798 0.95460 1.21090 0.89665 0.95309 0.99186 0.87115 1.26791 1.01055 1.00184 0.92939 1.66205 1.06432 1.08532 1.37508 1.21789 0.96485 1.00874 0.91922 1.27089 1.06277 1.07389 1.00161 1.84274 1.23655 1.40360 1.13032 1.21852 0.92068 0.91870 0.92613 0.88841 0.94798 0.96844 0.92576 0.93914 0.92122 0.90639 0.91195 0.91585 0.90041 0.89577 0.80897 0.80762 0.89323 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 2 C 0.27 6.41 2.62 -69.08 -0.18 6.23 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.03 8.37 -34.44 -0.29 -13.32 16 5 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.87 11.32 55.43 0.63 -23.24 16 8 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 N -0.99 -20.41 3.12 -115.85 -0.36 -20.77 16 13 C 0.10 1.76 9.90 59.85 0.59 2.36 16 14 S 2.79 56.16 6.35 -107.50 -0.68 55.47 16 15 O -0.97 -22.68 16.28 -57.17 -0.93 -23.61 16 16 O -0.99 -20.56 16.32 -57.17 -0.93 -21.49 16 17 N -1.02 -17.10 3.75 -111.42 -0.42 -17.51 16 18 C 0.13 1.68 6.99 -3.06 -0.02 1.66 16 19 C -0.11 -1.27 6.41 -24.89 -0.16 -1.43 16 20 C -0.03 -0.39 3.53 -89.62 -0.32 -0.71 16 21 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 22 C 0.07 0.89 6.10 -13.46 -0.08 0.81 16 23 N -0.47 -6.27 10.10 -11.86 -0.12 -6.39 16 24 C 0.04 0.44 11.35 -19.18 -0.22 0.22 16 25 C -0.27 -2.63 11.37 29.12 0.33 -2.30 16 26 S 0.13 1.50 23.18 -107.50 -2.49 -0.99 16 27 C 0.14 2.33 6.44 -2.53 -0.02 2.31 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.98 7.01 -51.93 -0.36 0.62 16 34 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.00 7.77 -51.92 -0.40 0.60 16 39 H 0.17 1.40 8.06 -52.48 -0.42 0.97 16 40 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -30.95 366.45 -10.80 -41.75 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.87 Total: 2.18 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -0.12 Total: -5.70 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -0.27 Total: -67.92 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.86 Total: -45.10 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 57.66 SS G_CDS: -3.18 Total: 54.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.95 -10.80 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882635169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.389 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds