Wall clock time and date at job start Wed Apr 1 2020 03:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47453 * 2 1 4 4 C 1.50700 * 109.46996 * 239.99800 * 2 1 3 5 5 H 1.08000 * 120.00312 * 240.00330 * 4 2 1 6 6 C 1.37884 * 119.99965 * 60.00134 * 4 2 1 7 7 N 1.31518 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47218 * 59.99910 * 8 6 4 10 10 H 1.48498 * 109.47225 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46957 * 299.99989 * 8 6 4 12 12 N 1.46499 * 109.47078 * 120.00101 * 2 1 3 13 13 C 1.46506 * 119.99936 * 59.99567 * 12 2 1 14 14 S 1.65597 * 119.99926 * 240.27528 * 12 2 1 15 15 O 1.42095 * 106.40469 * 23.26116 * 14 12 2 16 16 O 1.42098 * 106.40441 * 156.18457 * 14 12 2 17 17 N 1.65602 * 107.21619 * 269.72326 * 14 12 2 18 18 C 1.47025 * 125.64773 * 269.69184 * 17 14 12 19 19 C 1.54331 * 107.26436 * 178.84953 * 18 17 14 20 20 C 1.55163 * 103.02166 * 338.14230 * 19 18 17 21 21 H 1.08997 * 111.03116 * 277.21446 * 20 19 18 22 22 C 1.50700 * 111.00259 * 153.38052 * 20 19 18 23 23 N 1.29023 * 124.91865 * 307.50120 * 22 20 19 24 24 C 1.31785 * 117.12240 * 179.81663 * 23 22 20 25 25 C 1.33637 * 114.50342 * 0.46958 * 24 23 22 26 26 S 1.70981 * 124.91366 * 127.80424 * 22 20 19 27 27 C 1.47423 * 125.64783 * 89.99938 * 17 14 12 28 28 H 1.08996 * 109.47248 * 59.99675 * 1 2 3 29 29 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46932 * 300.00026 * 1 2 3 31 31 H 0.96995 * 119.99381 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 90.00398 * 13 12 2 33 33 H 1.09000 * 109.46803 * 209.99571 * 13 12 2 34 34 H 1.09000 * 109.47214 * 330.00364 * 13 12 2 35 35 H 1.08996 * 109.88312 * 298.39522 * 18 17 14 36 36 H 1.08994 * 109.88381 * 59.55996 * 18 17 14 37 37 H 1.08998 * 110.85153 * 219.67075 * 19 18 17 38 38 H 1.09008 * 110.67046 * 96.52198 * 19 18 17 39 39 H 1.08004 * 122.74457 * 180.22447 * 24 23 22 40 40 H 1.07994 * 126.03900 * 179.79036 * 25 24 23 41 41 H 1.08993 * 110.36757 * 322.92974 * 27 17 14 42 42 H 1.09005 * 110.36657 * 85.25459 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8258 -0.4207 -5.2205 11 1 3.8063 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9647 0.1161 2.2896 15 8 2.6845 1.4988 2.1198 16 8 2.8119 -0.5613 3.5294 17 7 4.5404 -0.1017 1.8289 18 6 5.4185 -1.1956 2.2693 19 6 6.7772 -1.0050 1.5625 20 6 6.4123 -0.1315 0.3331 21 1 6.0322 -0.7450 -0.4837 22 6 7.5937 0.6892 -0.1161 23 7 8.2917 1.4591 0.6486 24 6 9.2975 2.1052 0.0938 25 6 9.4506 1.8746 -1.2136 26 16 8.1986 0.7405 -1.7145 27 6 5.2968 0.7727 0.9142 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7087 1.1612 -3.4844 32 1 2.4156 -2.7378 0.9717 33 1 1.6238 -2.2852 2.5002 34 1 0.6903 -2.3002 0.9846 35 1 5.5514 -1.1520 3.3502 36 1 4.9864 -2.1550 1.9853 37 1 7.1878 -1.9638 1.2461 38 1 7.4790 -0.4821 2.2124 39 1 9.9425 2.7698 0.6494 40 1 10.2083 2.3066 -1.8505 41 1 4.6499 1.1372 0.1163 42 1 5.7327 1.6083 1.4620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882635169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:39 Heat of formation + Delta-G solvation = -41.362200 kcal Electronic energy + Delta-G solvation = -27207.420842 eV Core-core repulsion = 23440.622574 eV Total energy + Delta-G solvation = -3766.798268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88179 -39.14544 -38.39978 -37.88639 -36.95325 -34.49066 -33.27191 -30.90790 -30.71882 -29.60962 -27.29609 -26.95671 -26.16159 -23.60840 -22.69779 -22.50350 -20.32826 -19.98400 -19.20862 -18.68331 -18.49437 -18.27075 -17.25642 -16.75752 -16.46560 -16.11872 -15.46545 -15.33279 -15.19427 -14.75755 -14.72445 -14.59554 -14.34199 -14.13644 -13.87777 -13.63093 -13.47155 -13.28361 -13.19722 -12.91903 -12.81087 -12.75106 -12.60801 -12.49232 -12.39245 -12.34539 -12.24032 -12.15369 -11.86968 -11.76552 -11.16987 -10.58700 -10.46960 -10.33583 -10.05963 -9.78941 -9.64032 -8.06233 -6.21245 -0.42732 -0.23728 0.42647 0.84278 1.48225 1.49292 1.56341 1.87816 1.95830 2.47048 2.53645 3.04078 3.22245 3.24615 3.59720 3.77493 3.84712 4.14219 4.31365 4.33414 4.40781 4.42462 4.55885 4.59303 4.73669 4.77372 4.82571 4.85619 4.93827 4.96115 4.98753 5.09168 5.17530 5.17901 5.22787 5.33147 5.37406 5.63276 5.76410 5.87513 6.11355 6.31094 6.79427 6.87698 7.48527 8.98276 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.005204 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.181850 B = 5379.169008 C = 7405.306317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.021 0.979 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.292 1.292 11 H -0.264 1.264 12 N -0.995 5.995 13 C 0.095 3.905 14 S 2.807 3.193 15 O -1.014 7.014 16 O -0.999 6.999 17 N -1.017 6.017 18 C 0.115 3.885 19 C -0.097 4.097 20 C -0.023 4.023 21 H 0.112 0.888 22 C 0.045 3.955 23 N -0.491 5.491 24 C 0.022 3.978 25 C -0.251 4.251 26 S 0.130 5.870 27 C 0.142 3.858 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.198 0.802 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.700 -4.709 2.730 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.039 0.961 4 C -0.564 4.564 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.218 1.218 11 H -0.189 1.189 12 N -0.837 5.837 13 C -0.051 4.051 14 S 2.819 3.181 15 O -0.999 6.999 16 O -0.983 6.983 17 N -0.857 5.857 18 C -0.010 4.010 19 C -0.137 4.137 20 C -0.047 4.047 21 H 0.130 0.870 22 C -0.232 4.232 23 N -0.206 5.206 24 C -0.128 4.128 25 C -0.389 4.389 26 S 0.384 5.616 27 C 0.014 3.986 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.215 0.785 40 H 0.224 0.776 41 H 0.079 0.921 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.809 -4.521 3.008 16.716 hybrid contribution 0.448 0.562 -0.821 1.091 sum 16.257 -3.959 2.187 16.874 Atomic orbital electron populations 1.21965 0.97960 1.00162 0.99928 1.18411 0.91902 0.91251 0.81582 0.96106 1.21546 1.31519 1.12969 0.90335 0.91156 1.25677 0.95203 0.95544 1.01783 1.70019 1.37463 1.24088 1.24300 0.85679 0.79203 0.78690 0.78532 1.19525 1.21788 1.18921 1.57663 1.64840 1.22642 1.38554 1.21462 1.02344 0.80210 1.01040 1.00842 0.72084 0.72404 0.72796 1.93528 1.84434 1.34703 1.87222 1.93502 1.86200 1.76349 1.42298 1.58903 1.28173 1.37841 1.60821 1.21955 0.90082 0.89259 0.99658 1.22647 0.95986 1.00855 0.94240 1.20983 0.88929 0.94937 0.99830 0.87024 1.26663 1.01536 1.01160 0.93833 1.66197 1.07132 1.08791 1.38522 1.22214 0.96481 1.01390 0.92720 1.27477 1.05680 1.05734 1.00056 1.84245 1.24285 1.40960 1.12081 1.21829 0.92456 0.92525 0.91761 0.91102 0.93427 0.96408 0.92831 0.92066 0.90595 0.90704 0.90404 0.89935 0.87044 0.89616 0.78502 0.77599 0.92148 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 8.95 71.98 0.64 -6.10 16 2 C 0.27 13.36 2.62 44.25 0.12 13.47 16 3 H 0.02 1.18 6.91 -2.39 -0.02 1.17 16 4 C -0.52 -26.01 8.37 25.60 0.21 -25.80 16 5 H 0.07 3.30 7.65 -2.91 -0.02 3.28 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -50.57 11.32 21.45 0.24 -50.33 16 8 Si 0.95 40.11 29.54 68.60 2.03 42.14 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 12 N -1.00 -40.96 3.12 -520.43 -1.62 -42.58 16 13 C 0.09 3.18 9.90 127.77 1.27 4.45 16 14 S 2.81 113.89 6.35 -56.49 -0.36 113.53 16 15 O -1.01 -49.17 16.28 -128.00 -2.08 -51.25 16 16 O -1.00 -40.70 16.32 -128.00 -2.09 -42.79 16 17 N -1.02 -34.00 3.75 -506.43 -1.90 -35.90 16 18 C 0.12 2.86 6.99 86.73 0.61 3.46 16 19 C -0.10 -2.02 6.41 31.79 0.20 -1.82 16 20 C -0.02 -0.60 3.53 -10.15 -0.04 -0.64 16 21 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 22 C 0.05 1.14 6.10 88.52 0.54 1.68 16 23 N -0.49 -12.45 10.10 -191.44 -1.93 -14.38 16 24 C 0.02 0.43 11.35 83.66 0.95 1.38 16 25 C -0.25 -4.21 11.37 66.78 0.76 -3.45 16 26 S 0.13 2.74 23.18 -56.49 -1.31 1.43 16 27 C 0.14 4.70 6.44 86.85 0.56 5.26 16 28 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 29 H 0.05 2.09 6.66 -2.39 -0.02 2.07 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.31 7.01 -2.39 -0.02 2.29 16 34 H 0.07 2.51 6.43 -2.39 -0.02 2.50 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 1.82 7.77 -2.38 -0.02 1.81 16 39 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 2.28 7.93 -2.38 -0.02 2.26 16 Total: -1.00 -67.31 366.45 -1.73 -69.04 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.03 Total: 17.86 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 6.27 Total: -6.75 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -5.22 Total: -143.20 kcal Atomic # 8 Polarization: -89.87 SS G_CDS: -4.17 Total: -94.04 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 116.62 SS G_CDS: -1.67 Total: 114.96 kcal Total: -67.31 -1.73 -69.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882635169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.675 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds