Wall clock time and date at job start Wed Apr 1 2020 04:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00380 * 2 1 4 4 H 1.48500 * 109.47021 * 270.00134 * 3 2 1 5 5 H 1.48493 * 109.47030 * 30.00007 * 3 2 1 6 6 H 1.48498 * 109.46926 * 149.99983 * 3 2 1 7 7 C 1.37886 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00036 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00031 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00224 * 264.53143 * 10 9 7 12 12 C 1.52996 * 109.46837 * 274.95263 * 11 10 9 13 13 F 1.39902 * 109.47312 * 60.00088 * 12 11 10 14 14 F 1.39897 * 109.46989 * 179.97438 * 12 11 10 15 15 F 1.39897 * 109.47266 * 300.00021 * 12 11 10 16 16 C 1.34775 * 119.99473 * 84.52905 * 10 9 7 17 17 O 1.21566 * 119.99637 * 174.42285 * 16 10 9 18 18 C 1.47766 * 120.00354 * 354.70260 * 16 10 9 19 19 C 1.41173 * 126.16791 * 184.57880 * 18 16 10 20 20 C 1.36853 * 104.89373 * 180.02562 * 19 18 16 21 21 N 1.37818 * 107.44787 * 0.02562 * 20 19 18 22 22 N 1.28082 * 109.00810 * 359.70199 * 21 20 19 23 23 C 1.46770 * 123.00301 * 179.97438 * 21 20 19 24 24 C 1.52968 * 109.78270 * 338.48389 * 23 21 20 25 25 C 1.53287 * 110.60453 * 53.53956 * 24 23 21 26 26 C 1.46819 * 130.33205 * 180.02562 * 20 19 18 27 27 O 1.21345 * 122.52729 * 349.49973 * 26 20 19 28 28 H 0.96999 * 119.99452 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46694 * 59.99542 * 9 7 2 30 30 H 1.08999 * 109.46653 * 299.99800 * 9 7 2 31 31 H 1.09004 * 109.46605 * 34.94765 * 11 10 9 32 32 H 1.08990 * 109.47021 * 154.95022 * 11 10 9 33 33 H 1.07996 * 127.55436 * 0.03754 * 19 18 16 34 34 H 1.09000 * 109.42017 * 218.38805 * 23 21 20 35 35 H 1.09000 * 109.36811 * 98.54096 * 23 21 20 36 36 H 1.09005 * 109.25275 * 293.25127 * 24 23 21 37 37 H 1.09005 * 109.22364 * 173.81422 * 24 23 21 38 38 H 1.09005 * 109.77981 * 176.57250 * 25 24 23 39 39 H 1.08999 * 109.78170 * 55.76809 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 7 3.9997 -2.5756 -0.0010 11 6 4.3583 -3.2257 1.2619 12 6 5.8015 -2.8715 1.6259 13 9 5.9205 -1.4846 1.7651 14 9 6.1438 -3.4918 2.8322 15 9 6.6598 -3.3139 0.6135 16 6 4.1189 -3.2481 -1.1628 17 8 4.6184 -4.3564 -1.1750 18 6 3.6480 -2.6360 -2.4226 19 6 3.6254 -3.2541 -3.6917 20 6 3.1138 -2.3060 -4.5356 21 7 2.8510 -1.1816 -3.7832 22 7 3.1676 -1.4123 -2.5638 23 6 2.2906 0.0491 -4.3537 24 6 2.5530 0.0877 -5.8602 25 6 2.0435 -1.1938 -6.5295 26 6 2.8508 -2.3610 -5.9790 27 8 3.2465 -3.2690 -6.6801 28 1 -0.4849 0.8401 0.0004 29 1 3.8751 -0.6806 0.8888 30 1 3.8744 -0.6803 -0.8912 31 1 3.6896 -2.8808 2.0507 32 1 4.2656 -4.3062 1.1535 33 1 3.9421 -4.2558 -3.9417 34 1 2.7587 0.9131 -3.8821 35 1 1.2161 0.0749 -4.1724 36 1 3.6245 0.1833 -6.0361 37 1 2.0400 0.9471 -6.2920 38 1 2.1819 -1.1264 -7.6087 39 1 0.9872 -1.3346 -6.3006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906850900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:03 Heat of formation + Delta-G solvation = -130.464711 kcal Electronic energy + Delta-G solvation = -31664.313840 eV Core-core repulsion = 26773.598235 eV Total energy + Delta-G solvation = -4890.715605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.73391 -47.28748 -47.17921 -42.43617 -39.33778 -38.81763 -35.90213 -35.45756 -32.64820 -31.76186 -30.78682 -29.37458 -28.18507 -27.45574 -24.38643 -22.94921 -22.83079 -22.57137 -21.61979 -19.62205 -18.64813 -18.18715 -18.04757 -17.34110 -17.06484 -16.78862 -16.58995 -15.93196 -15.60853 -15.26165 -14.83946 -14.60522 -14.51069 -14.19040 -14.11518 -14.06477 -13.88141 -13.66632 -13.48894 -13.38398 -13.36948 -13.09600 -12.77882 -12.57001 -12.40911 -12.26019 -11.97171 -11.74839 -11.63389 -11.48817 -11.08234 -10.81994 -10.35781 -10.26838 -9.81673 -9.67873 -9.60861 -9.00883 -8.86099 -8.66927 -8.12285 -6.20868 -4.18056 1.05042 2.02778 2.46284 2.80489 3.04050 3.11467 3.21721 3.27003 3.33649 3.79896 3.82115 4.13794 4.23776 4.26744 4.38739 4.42888 4.53593 4.63327 4.75839 4.95079 5.12235 5.18771 5.21858 5.32990 5.36261 5.45361 5.57590 5.64698 5.66563 5.75322 5.88783 6.23197 6.48193 6.66749 6.87673 7.14184 7.30425 7.43856 7.78133 8.16177 8.34788 8.60535 8.82437 9.39181 10.91879 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.005073 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.037106 B = 5518.452121 C = 7408.778989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.081 3.919 3 Si 0.867 3.133 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.199 3.801 10 N -0.582 5.582 11 C 0.082 3.918 12 C 0.431 3.569 13 F -0.182 7.182 14 F -0.188 7.188 15 F -0.178 7.178 16 C 0.613 3.387 17 O -0.544 6.544 18 C -0.033 4.033 19 C -0.086 4.086 20 C -0.107 4.107 21 N -0.262 5.262 22 N -0.151 5.151 23 C 0.117 3.883 24 C -0.129 4.129 25 C -0.167 4.167 26 C 0.434 3.566 27 O -0.445 6.445 28 H 0.264 0.736 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.168 0.832 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 1.662 -7.442 9.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.121 4.121 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.078 3.922 10 N -0.311 5.311 11 C -0.045 4.045 12 C 0.375 3.625 13 F -0.164 7.164 14 F -0.169 7.169 15 F -0.160 7.160 16 C 0.401 3.599 17 O -0.421 6.421 18 C -0.188 4.188 19 C -0.114 4.114 20 C -0.227 4.227 21 N -0.058 5.058 22 N 0.008 4.992 23 C -0.003 4.003 24 C -0.167 4.167 25 C -0.205 4.205 26 C 0.309 3.691 27 O -0.317 6.317 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.186 0.814 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.998 1.807 -7.308 9.036 hybrid contribution 0.493 0.552 -0.101 0.747 sum 5.491 2.359 -7.409 9.519 Atomic orbital electron populations 1.69901 1.06100 1.26825 1.50634 1.24702 0.94487 0.98431 0.94485 0.87007 0.80696 0.84238 0.78684 1.20102 1.21271 1.18793 1.21160 0.88480 0.94801 1.50731 0.90693 1.20349 0.96562 0.76321 0.98954 1.47681 1.63291 1.16699 1.03479 1.22487 0.89055 1.02524 0.90409 1.21530 0.91997 0.74664 0.74280 1.93180 1.96851 1.30753 1.95571 1.93148 1.93808 1.82845 1.47148 1.93202 1.73443 1.89133 1.60208 1.16884 0.77177 0.84001 0.81862 1.90746 1.45247 1.19801 1.86288 1.21642 1.09774 0.92538 0.94891 1.21804 0.99293 0.99936 0.90372 1.22093 1.14123 0.90990 0.95456 1.46598 1.43177 1.11580 1.04442 1.74084 1.08783 1.17838 0.98446 1.22137 1.01076 0.83779 0.93262 1.21873 1.03577 0.98563 0.92682 1.22471 1.01826 0.93595 1.02563 1.21722 0.76546 0.85618 0.85175 1.90588 1.44204 1.35197 1.61701 0.92645 0.94373 0.92357 0.85518 0.85907 0.81423 0.87382 0.87781 0.90113 0.87548 0.87868 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.96 55.43 0.77 -24.00 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 19.20 27.47 -169.99 -4.67 14.53 16 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 7 C -0.51 -12.88 8.58 -34.44 -0.30 -13.18 16 8 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 9 C 0.20 4.35 3.55 -5.19 -0.02 4.33 16 10 N -0.58 -11.75 2.39 -176.21 -0.42 -12.18 16 11 C 0.08 1.38 5.43 -4.04 -0.02 1.36 16 12 C 0.43 7.14 3.29 37.16 0.12 7.27 16 13 F -0.18 -3.20 15.86 2.25 0.04 -3.16 16 14 F -0.19 -2.84 17.32 2.25 0.04 -2.80 16 15 F -0.18 -3.23 16.63 2.25 0.04 -3.20 16 16 C 0.61 12.83 7.38 -12.37 -0.09 12.74 16 17 O -0.54 -11.78 16.09 5.31 0.09 -11.69 16 18 C -0.03 -0.66 6.73 -82.69 -0.56 -1.22 16 19 C -0.09 -1.53 10.85 -38.97 -0.42 -1.95 16 20 C -0.11 -1.70 6.73 -82.21 -0.55 -2.25 16 21 N -0.26 -4.28 3.81 -57.18 -0.22 -4.50 16 22 N -0.15 -3.01 7.64 33.43 0.26 -2.75 16 23 C 0.12 1.37 7.16 -3.91 -0.03 1.34 16 24 C -0.13 -0.99 5.85 -26.60 -0.16 -1.15 16 25 C -0.17 -1.45 6.23 -26.98 -0.17 -1.61 16 26 C 0.43 5.81 7.10 -30.08 -0.21 5.60 16 27 O -0.45 -7.08 17.97 5.50 0.10 -6.98 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.04 0.83 5.99 -51.93 -0.31 0.52 16 30 H 0.06 1.30 5.06 -51.93 -0.26 1.04 16 31 H 0.13 1.93 8.11 -51.93 -0.42 1.51 16 32 H 0.12 1.93 7.36 -51.93 -0.38 1.54 16 33 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 34 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -31.99 344.05 -5.22 -37.22 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.93 Total: 1.05 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -2.50 Total: 13.26 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.39 Total: -43.42 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.67 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 0.11 Total: -9.16 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.67 Total: 14.53 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.99 -5.22 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906850900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.249 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds