Wall clock time and date at job start Wed Apr 1 2020 04:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00380 * 2 1 4 4 H 1.48500 * 109.47021 * 270.00134 * 3 2 1 5 5 H 1.48493 * 109.47030 * 30.00007 * 3 2 1 6 6 H 1.48498 * 109.46926 * 149.99983 * 3 2 1 7 7 C 1.37886 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00036 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00031 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00224 * 264.53143 * 10 9 7 12 12 C 1.52996 * 109.46837 * 274.95263 * 11 10 9 13 13 F 1.39902 * 109.47312 * 60.00088 * 12 11 10 14 14 F 1.39897 * 109.46989 * 179.97438 * 12 11 10 15 15 F 1.39897 * 109.47266 * 300.00021 * 12 11 10 16 16 C 1.34775 * 119.99473 * 84.52905 * 10 9 7 17 17 O 1.21566 * 119.99637 * 174.42285 * 16 10 9 18 18 C 1.47766 * 120.00354 * 354.70260 * 16 10 9 19 19 C 1.41173 * 126.16791 * 184.57880 * 18 16 10 20 20 C 1.36853 * 104.89373 * 180.02562 * 19 18 16 21 21 N 1.37818 * 107.44787 * 0.02562 * 20 19 18 22 22 N 1.28082 * 109.00810 * 359.70199 * 21 20 19 23 23 C 1.46770 * 123.00301 * 179.97438 * 21 20 19 24 24 C 1.52968 * 109.78270 * 338.48389 * 23 21 20 25 25 C 1.53287 * 110.60453 * 53.53956 * 24 23 21 26 26 C 1.46819 * 130.33205 * 180.02562 * 20 19 18 27 27 O 1.21345 * 122.52729 * 349.49973 * 26 20 19 28 28 H 0.96999 * 119.99452 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46694 * 59.99542 * 9 7 2 30 30 H 1.08999 * 109.46653 * 299.99800 * 9 7 2 31 31 H 1.09004 * 109.46605 * 34.94765 * 11 10 9 32 32 H 1.08990 * 109.47021 * 154.95022 * 11 10 9 33 33 H 1.07996 * 127.55436 * 0.03754 * 19 18 16 34 34 H 1.09000 * 109.42017 * 218.38805 * 23 21 20 35 35 H 1.09000 * 109.36811 * 98.54096 * 23 21 20 36 36 H 1.09005 * 109.25275 * 293.25127 * 24 23 21 37 37 H 1.09005 * 109.22364 * 173.81422 * 24 23 21 38 38 H 1.09005 * 109.77981 * 176.57250 * 25 24 23 39 39 H 1.08999 * 109.78170 * 55.76809 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 7 3.9997 -2.5756 -0.0010 11 6 4.3583 -3.2257 1.2619 12 6 5.8015 -2.8715 1.6259 13 9 5.9205 -1.4846 1.7651 14 9 6.1438 -3.4918 2.8322 15 9 6.6598 -3.3139 0.6135 16 6 4.1189 -3.2481 -1.1628 17 8 4.6184 -4.3564 -1.1750 18 6 3.6480 -2.6360 -2.4226 19 6 3.6254 -3.2541 -3.6917 20 6 3.1138 -2.3060 -4.5356 21 7 2.8510 -1.1816 -3.7832 22 7 3.1676 -1.4123 -2.5638 23 6 2.2906 0.0491 -4.3537 24 6 2.5530 0.0877 -5.8602 25 6 2.0435 -1.1938 -6.5295 26 6 2.8508 -2.3610 -5.9790 27 8 3.2465 -3.2690 -6.6801 28 1 -0.4849 0.8401 0.0004 29 1 3.8751 -0.6806 0.8888 30 1 3.8744 -0.6803 -0.8912 31 1 3.6896 -2.8808 2.0507 32 1 4.2656 -4.3062 1.1535 33 1 3.9421 -4.2558 -3.9417 34 1 2.7587 0.9131 -3.8821 35 1 1.2161 0.0749 -4.1724 36 1 3.6245 0.1833 -6.0361 37 1 2.0400 0.9471 -6.2920 38 1 2.1819 -1.1264 -7.6087 39 1 0.9872 -1.3346 -6.3006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906850900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:02 Heat of formation + Delta-G solvation = -150.773089 kcal Electronic energy + Delta-G solvation = -31665.194478 eV Core-core repulsion = 26773.598235 eV Total energy + Delta-G solvation = -4891.596243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.09953 -48.61724 -48.58505 -43.74649 -40.80323 -40.06565 -37.11275 -36.85129 -34.56733 -32.97005 -32.16436 -30.80628 -29.44617 -28.95349 -25.71238 -24.61117 -24.01327 -23.78693 -22.95472 -20.94252 -19.94694 -19.58426 -19.40261 -19.02920 -18.39019 -18.32431 -17.92005 -17.26251 -16.96999 -16.39016 -16.23054 -15.97199 -15.69525 -15.54965 -15.48074 -15.46021 -15.23442 -15.02943 -14.92211 -14.77356 -14.74169 -14.46784 -14.24936 -13.91938 -13.74318 -13.46238 -13.25386 -13.22169 -12.83297 -12.56917 -12.32987 -12.19541 -12.09282 -11.75837 -11.57080 -11.27634 -10.93009 -10.67586 -10.32351 -10.20017 -9.77363 -8.19564 -6.21579 -0.13204 0.51019 1.29551 1.38254 1.45229 1.52701 1.60793 1.68047 1.86824 2.30225 2.40990 2.77039 2.83796 3.02324 3.11946 3.16570 3.27868 3.54456 3.61979 3.71193 3.94535 4.16514 4.17805 4.28861 4.30837 4.43703 4.49605 4.55563 4.57231 4.83869 4.91401 4.93876 5.06976 5.14130 5.40888 5.51001 5.66666 6.07932 6.23301 6.37781 6.71539 6.80875 7.03540 7.39727 8.96655 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.005073 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.037106 B = 5518.452121 C = 7408.778989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.037 3.963 3 Si 0.921 3.079 4 H -0.249 1.249 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.504 4.504 8 H 0.029 0.971 9 C 0.212 3.788 10 N -0.587 5.587 11 C 0.076 3.924 12 C 0.440 3.560 13 F -0.186 7.186 14 F -0.176 7.176 15 F -0.188 7.188 16 C 0.607 3.393 17 O -0.560 6.560 18 C -0.061 4.061 19 C -0.110 4.110 20 C -0.099 4.099 21 N -0.253 5.253 22 N -0.183 5.183 23 C 0.098 3.902 24 C -0.116 4.116 25 C -0.155 4.155 26 C 0.435 3.565 27 O -0.472 6.472 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.170 0.830 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 3.807 -9.106 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.161 4.161 3 Si 0.744 3.256 4 H -0.173 1.173 5 H -0.216 1.216 6 H -0.179 1.179 7 C -0.543 4.543 8 H 0.047 0.953 9 C 0.090 3.910 10 N -0.317 5.317 11 C -0.049 4.049 12 C 0.384 3.616 13 F -0.168 7.168 14 F -0.158 7.158 15 F -0.169 7.169 16 C 0.395 3.605 17 O -0.438 6.438 18 C -0.215 4.215 19 C -0.139 4.139 20 C -0.220 4.220 21 N -0.049 5.049 22 N -0.024 5.024 23 C -0.019 4.019 24 C -0.154 4.154 25 C -0.192 4.192 26 C 0.312 3.688 27 O -0.346 6.346 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.187 0.813 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.170 0.830 38 H 0.151 0.849 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.376 3.956 -8.960 11.173 hybrid contribution 0.321 -0.188 0.392 0.541 sum 5.697 3.768 -8.568 10.957 Atomic orbital electron populations 1.70040 1.07937 1.27831 1.52414 1.25373 0.95011 1.01778 0.93964 0.86125 0.79483 0.79739 0.80205 1.17311 1.21619 1.17909 1.21108 0.89975 0.93023 1.50198 0.95263 1.20096 0.94287 0.77437 0.99149 1.47669 1.63225 1.16306 1.04471 1.22705 0.89640 1.03021 0.89561 1.21312 0.91446 0.74430 0.74396 1.93169 1.96840 1.31157 1.95598 1.93172 1.93672 1.82592 1.46322 1.93188 1.73709 1.89228 1.60788 1.17138 0.76922 0.83947 0.82450 1.90711 1.46100 1.20353 1.86659 1.21685 1.11172 0.93366 0.95247 1.21965 1.00795 1.00819 0.90293 1.22598 1.12281 0.90223 0.96915 1.47102 1.41491 1.12786 1.03497 1.73928 1.10080 1.17925 1.00484 1.22723 1.01110 0.82095 0.96022 1.21952 1.04516 0.99561 0.89358 1.22550 1.01445 0.91169 1.04049 1.22429 0.76199 0.86586 0.83554 1.90584 1.45477 1.36765 1.61749 0.92542 0.93777 0.92090 0.84015 0.84979 0.81260 0.86873 0.87417 0.89688 0.83043 0.84924 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.82 13.96 21.45 0.30 -52.52 16 2 C 0.04 1.92 5.47 84.66 0.46 2.38 16 3 Si 0.92 38.45 27.47 68.60 1.88 40.34 16 4 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 5 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.25 6.54 99.48 0.65 -9.60 16 7 C -0.50 -25.82 8.58 25.60 0.22 -25.60 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 9 C 0.21 9.26 3.55 85.63 0.30 9.56 16 10 N -0.59 -24.06 2.39 -829.67 -1.98 -26.04 16 11 C 0.08 2.56 5.43 86.38 0.47 3.03 16 12 C 0.44 14.27 3.29 71.98 0.24 14.51 16 13 F -0.19 -6.33 15.86 44.97 0.71 -5.62 16 14 F -0.18 -5.11 17.32 44.97 0.78 -4.33 16 15 F -0.19 -6.75 16.63 44.97 0.75 -6.00 16 16 C 0.61 26.15 7.38 86.76 0.64 26.79 16 17 O -0.56 -24.97 16.09 -3.92 -0.06 -25.04 16 18 C -0.06 -2.50 6.73 42.33 0.28 -2.22 16 19 C -0.11 -4.05 10.85 22.67 0.25 -3.81 16 20 C -0.10 -3.10 6.73 40.12 0.27 -2.83 16 21 N -0.25 -7.99 3.81 -334.81 -1.28 -9.27 16 22 N -0.18 -7.29 7.64 -48.14 -0.37 -7.65 16 23 C 0.10 2.03 7.16 86.32 0.62 2.65 16 24 C -0.12 -1.26 5.85 30.68 0.18 -1.08 16 25 C -0.16 -2.04 6.23 30.44 0.19 -1.85 16 26 C 0.44 10.85 7.10 28.42 0.20 11.05 16 27 O -0.47 -14.46 17.97 -3.23 -0.06 -14.52 16 28 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.04 1.88 5.99 -2.39 -0.01 1.87 16 30 H 0.06 2.69 5.06 -2.39 -0.01 2.68 16 31 H 0.14 4.28 8.11 -2.38 -0.02 4.26 16 32 H 0.13 4.17 7.36 -2.39 -0.02 4.16 16 33 H 0.17 5.89 8.06 -2.91 -0.02 5.87 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.15 0.44 8.14 -2.38 -0.02 0.43 16 38 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -71.94 344.05 6.07 -65.87 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.07 Total: 12.20 kcal Atomic # 6 Polarization: 28.27 SS G_CDS: 4.32 Total: 32.59 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -3.33 Total: -95.49 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.12 Total: -39.56 kcal Atomic # 9 Polarization: -18.19 SS G_CDS: 2.24 Total: -15.95 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.88 Total: 40.34 kcal Total: -71.94 6.07 -65.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906850900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.902 kcal (2) G-P(sol) polarization free energy of solvation -71.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds