Wall clock time and date at job start Wed Apr 1 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35819 * 117.00202 * 2 1 4 4 C 1.38860 * 119.90355 * 0.02562 * 3 2 1 5 5 C 1.37750 * 120.17488 * 179.97438 * 4 3 2 6 6 C 1.39953 * 119.97741 * 359.97438 * 5 4 3 7 7 C 1.46996 * 120.10054 * 179.97438 * 6 5 4 8 8 C 1.34985 * 119.99661 * 359.97438 * 7 6 5 9 9 C 1.46255 * 120.00025 * 179.97438 * 8 7 6 10 10 O 1.21721 * 119.99947 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99931 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00074 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46746 * 325.00368 * 12 11 9 14 14 C 1.50695 * 109.47167 * 205.00636 * 12 11 9 15 15 H 1.08004 * 119.99594 * 274.93506 * 14 12 11 16 16 C 1.37877 * 120.00506 * 94.94206 * 14 12 11 17 17 N 1.31510 * 120.00289 * 184.87330 * 16 14 12 18 18 Si 1.86801 * 119.99525 * 4.87754 * 16 14 12 19 19 H 1.48497 * 109.47228 * 84.81069 * 18 16 14 20 20 H 1.48507 * 109.46674 * 204.80993 * 18 16 14 21 21 H 1.48497 * 109.47505 * 324.80627 * 18 16 14 22 22 C 1.52996 * 109.47190 * 84.99904 * 12 11 9 23 23 F 1.39911 * 109.46853 * 54.94142 * 22 12 11 24 24 F 1.39899 * 109.47236 * 174.94044 * 22 12 11 25 25 F 1.39898 * 109.47519 * 294.94480 * 22 12 11 26 26 C 1.39972 * 119.80514 * 0.02562 * 6 5 4 27 27 C 1.38085 * 119.82895 * 0.02562 * 26 6 5 28 28 O 1.35997 * 119.99280 * 180.02562 * 27 26 6 29 29 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47320 * 300.00037 * 1 2 3 31 31 H 1.09004 * 109.46845 * 59.99704 * 1 2 3 32 32 H 1.07998 * 119.91536 * 0.24999 * 4 3 2 33 33 H 1.08000 * 120.01604 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.00569 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.99769 * 0.02562 * 8 7 6 36 36 H 0.96998 * 120.00482 * 0.02562 * 11 9 8 37 37 H 0.96999 * 119.99991 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.08020 * 180.02562 * 26 6 5 39 39 H 0.96692 * 113.99975 * 89.99105 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 1.2875 2.3735 0.0005 5 6 1.9071 3.6038 0.0011 6 6 3.3043 3.6830 0.0016 7 6 3.9683 4.9945 0.0016 8 6 3.2302 6.1246 0.0006 9 6 3.8908 7.4295 0.0011 10 8 5.1062 7.4964 0.0021 11 7 3.1538 8.5579 -0.0004 12 6 3.8155 9.8650 -0.0004 13 1 4.7299 9.8092 0.5901 14 6 2.8928 10.8951 0.5984 15 1 2.1558 11.3848 -0.0208 16 6 2.9896 11.2124 1.9367 17 7 2.1236 12.0391 2.4808 18 14 4.3509 10.4680 2.9769 19 1 5.5837 11.2839 2.8363 20 1 3.9306 10.4475 4.4011 21 1 4.6206 9.0809 2.5205 22 6 4.1597 10.2624 -1.4372 23 9 3.0023 10.2218 -2.2223 24 9 4.6861 11.5585 -1.4492 25 9 5.1052 9.3702 -1.9541 26 6 4.0677 2.5098 0.0011 27 6 3.4383 1.2808 -0.0005 28 8 4.1768 0.1388 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2092 2.3136 0.0050 33 1 1.3149 4.5069 0.0011 34 1 5.0467 5.0538 0.0016 35 1 2.1518 6.0652 0.0002 36 1 2.1853 8.5046 -0.0015 37 1 2.1919 12.2626 3.4222 38 1 5.1463 2.5658 0.0019 39 1 4.3894 -0.1921 0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:56 Heat of formation + Delta-G solvation = -231.885843 kcal Electronic energy + Delta-G solvation = -29538.090537 eV Core-core repulsion = 24610.684231 eV Total energy + Delta-G solvation = -4927.406307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.05978 -46.58268 -46.54097 -40.70766 -39.11047 -38.19816 -37.11424 -34.87128 -33.26788 -32.58204 -30.70727 -29.80073 -28.84350 -27.33409 -24.97520 -24.11652 -22.92696 -21.76351 -20.64241 -19.56335 -18.77584 -18.22688 -17.73271 -17.53305 -17.16594 -16.73569 -16.55295 -16.25737 -16.17945 -15.40885 -15.13193 -14.88121 -14.46074 -14.35513 -14.02942 -13.86306 -13.49792 -13.45065 -13.05710 -12.99891 -12.88459 -12.79303 -12.75462 -12.70000 -12.59598 -12.43245 -11.91576 -11.82301 -11.70769 -11.44625 -11.17632 -10.88675 -10.73086 -10.17012 -9.89634 -9.83850 -9.49700 -9.15198 -8.99670 -8.45454 -7.96542 -6.55875 -4.71154 0.46079 0.92494 1.93538 2.85013 3.09395 3.18397 3.27552 3.33616 3.64502 3.73032 3.91160 4.00943 4.08216 4.41240 4.56396 4.67121 4.75864 4.82051 4.86657 4.95433 5.07439 5.12387 5.17218 5.19353 5.25397 5.34079 5.50138 5.61338 5.81298 5.88860 5.95982 6.22333 6.30615 6.45577 6.53619 6.84172 6.88014 7.12197 7.43019 7.83018 8.29553 8.49287 8.81741 9.00210 10.52580 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.002527 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.875813 B =11079.690867 C =11535.410574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.107 3.893 4 C -0.196 4.196 5 C -0.071 4.071 6 C -0.084 4.084 7 C -0.039 4.039 8 C -0.192 4.192 9 C 0.529 3.471 10 O -0.548 6.548 11 N -0.705 5.705 12 C 0.203 3.797 13 H 0.090 0.910 14 C -0.538 4.538 15 H 0.094 0.906 16 C 0.100 3.900 17 N -0.860 5.860 18 Si 0.867 3.133 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.253 1.253 22 C 0.438 3.562 23 F -0.193 7.193 24 F -0.182 7.182 25 F -0.195 7.195 26 C -0.086 4.086 27 C 0.071 3.929 28 O -0.486 6.486 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.402 0.598 37 H 0.276 0.724 38 H 0.142 0.858 39 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -20.525 -1.963 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.061 3.939 4 C -0.214 4.214 5 C -0.088 4.088 6 C -0.084 4.084 7 C -0.058 4.058 8 C -0.213 4.213 9 C 0.317 3.683 10 O -0.428 6.428 11 N -0.356 5.356 12 C 0.099 3.901 13 H 0.108 0.892 14 C -0.575 4.575 15 H 0.112 0.888 16 C -0.110 4.110 17 N -0.492 5.492 18 Si 0.692 3.308 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.177 1.177 22 C 0.382 3.618 23 F -0.174 7.174 24 F -0.163 7.163 25 F -0.177 7.177 26 C -0.104 4.104 27 C 0.026 3.974 28 O -0.295 6.295 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.238 0.762 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.550 -20.470 -2.431 20.771 hybrid contribution -0.138 -0.146 0.861 0.884 sum -2.688 -20.616 -1.570 20.850 Atomic orbital electron populations 1.23128 0.78274 1.04132 1.01583 1.86103 1.21397 1.26330 1.88246 1.19656 0.91759 0.84918 0.97602 1.21107 1.00277 0.91653 1.08392 1.21311 0.93799 0.97554 0.96186 1.18852 0.92858 0.92765 1.03937 1.22199 1.00428 0.89736 0.93486 1.23154 1.00432 0.92765 1.04944 1.18551 0.87549 0.85118 0.77062 1.90782 1.13659 1.87958 1.50437 1.47299 1.10600 1.05275 1.72439 1.20008 0.98682 0.84203 0.87170 0.89218 1.20725 1.19816 1.20992 0.96005 0.88847 1.24992 0.95253 0.93407 0.97339 1.69853 1.33838 1.31916 1.13628 0.86949 0.82580 0.81540 0.79774 1.18987 1.20495 1.17737 1.21720 0.73643 0.74526 0.91935 1.93068 1.50242 1.96248 1.77863 1.93107 1.86855 1.39333 1.97012 1.93145 1.66477 1.68663 1.89409 1.21478 1.00727 0.90035 0.98183 1.17574 0.86099 0.86536 1.07187 1.84907 1.72045 1.39227 1.33316 0.88096 0.92448 0.92412 0.84661 0.84554 0.84568 0.85494 0.76221 0.91427 0.84022 0.75888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.01 10.26 -33.85 -0.35 -3.36 16 3 C 0.11 1.12 6.71 -38.90 -0.26 0.86 16 4 C -0.20 -1.81 9.01 -39.53 -0.36 -2.17 16 5 C -0.07 -0.71 9.40 -39.12 -0.37 -1.08 16 6 C -0.08 -0.96 5.87 -105.06 -0.62 -1.57 16 7 C -0.04 -0.52 9.45 -37.19 -0.35 -0.87 16 8 C -0.19 -2.80 9.41 -37.52 -0.35 -3.15 16 9 C 0.53 10.24 7.39 -13.04 -0.10 10.14 16 10 O -0.55 -12.38 14.80 5.17 0.08 -12.30 16 11 N -0.71 -14.07 4.90 -56.38 -0.28 -14.35 16 12 C 0.20 4.67 1.71 -69.08 -0.12 4.55 16 13 H 0.09 2.20 4.73 -51.93 -0.25 1.95 16 14 C -0.54 -13.62 8.52 -34.44 -0.29 -13.92 16 15 H 0.09 2.55 8.00 -52.48 -0.42 2.13 16 16 C 0.10 2.60 5.47 -17.82 -0.10 2.50 16 17 N -0.86 -23.40 13.96 55.43 0.77 -22.63 16 18 Si 0.87 20.00 26.99 -169.99 -4.59 15.41 16 19 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.25 -5.93 6.82 56.52 0.39 -5.54 16 22 C 0.44 9.81 2.83 37.16 0.11 9.92 16 23 F -0.19 -4.14 16.93 2.25 0.04 -4.10 16 24 F -0.18 -4.15 16.89 2.25 0.04 -4.11 16 25 F -0.20 -4.37 15.83 2.25 0.04 -4.33 16 26 C -0.09 -0.92 9.72 -38.99 -0.38 -1.30 16 27 C 0.07 0.77 6.71 -39.19 -0.26 0.51 16 28 O -0.49 -4.84 13.28 -34.41 -0.46 -5.29 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.14 0.92 6.27 -52.49 -0.33 0.59 16 33 H 0.14 1.17 6.15 -52.49 -0.32 0.85 16 34 H 0.14 1.90 7.52 -52.49 -0.39 1.50 16 35 H 0.13 1.45 6.06 -52.49 -0.32 1.13 16 36 H 0.40 7.05 8.57 -40.82 -0.35 6.70 16 37 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.39 2.06 9.06 45.56 0.41 2.47 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -32.15 353.07 -4.60 -36.75 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -2.76 Total: 7.46 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -2.46 Total: 5.54 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.50 Total: -36.98 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.73 Total: -20.95 kcal Atomic # 9 Polarization: -12.66 SS G_CDS: 0.11 Total: -12.55 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.59 Total: 15.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.15 -4.60 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.135 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds