Wall clock time and date at job start Wed Apr 1 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35819 * 117.00202 * 2 1 4 4 C 1.38860 * 119.90355 * 0.02562 * 3 2 1 5 5 C 1.37750 * 120.17488 * 179.97438 * 4 3 2 6 6 C 1.39953 * 119.97741 * 359.97438 * 5 4 3 7 7 C 1.46996 * 120.10054 * 179.97438 * 6 5 4 8 8 C 1.34985 * 119.99661 * 359.97438 * 7 6 5 9 9 C 1.46255 * 120.00025 * 179.97438 * 8 7 6 10 10 O 1.21721 * 119.99947 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99931 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00074 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46746 * 325.00368 * 12 11 9 14 14 C 1.50695 * 109.47167 * 205.00636 * 12 11 9 15 15 H 1.08004 * 119.99594 * 274.93506 * 14 12 11 16 16 C 1.37877 * 120.00506 * 94.94206 * 14 12 11 17 17 N 1.31510 * 120.00289 * 184.87330 * 16 14 12 18 18 Si 1.86801 * 119.99525 * 4.87754 * 16 14 12 19 19 H 1.48497 * 109.47228 * 84.81069 * 18 16 14 20 20 H 1.48507 * 109.46674 * 204.80993 * 18 16 14 21 21 H 1.48497 * 109.47505 * 324.80627 * 18 16 14 22 22 C 1.52996 * 109.47190 * 84.99904 * 12 11 9 23 23 F 1.39911 * 109.46853 * 54.94142 * 22 12 11 24 24 F 1.39899 * 109.47236 * 174.94044 * 22 12 11 25 25 F 1.39898 * 109.47519 * 294.94480 * 22 12 11 26 26 C 1.39972 * 119.80514 * 0.02562 * 6 5 4 27 27 C 1.38085 * 119.82895 * 0.02562 * 26 6 5 28 28 O 1.35997 * 119.99280 * 180.02562 * 27 26 6 29 29 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47320 * 300.00037 * 1 2 3 31 31 H 1.09004 * 109.46845 * 59.99704 * 1 2 3 32 32 H 1.07998 * 119.91536 * 0.24999 * 4 3 2 33 33 H 1.08000 * 120.01604 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.00569 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.99769 * 0.02562 * 8 7 6 36 36 H 0.96998 * 120.00482 * 0.02562 * 11 9 8 37 37 H 0.96999 * 119.99991 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.08020 * 180.02562 * 26 6 5 39 39 H 0.96692 * 113.99975 * 89.99105 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 1.2875 2.3735 0.0005 5 6 1.9071 3.6038 0.0011 6 6 3.3043 3.6830 0.0016 7 6 3.9683 4.9945 0.0016 8 6 3.2302 6.1246 0.0006 9 6 3.8908 7.4295 0.0011 10 8 5.1062 7.4964 0.0021 11 7 3.1538 8.5579 -0.0004 12 6 3.8155 9.8650 -0.0004 13 1 4.7299 9.8092 0.5901 14 6 2.8928 10.8951 0.5984 15 1 2.1558 11.3848 -0.0208 16 6 2.9896 11.2124 1.9367 17 7 2.1236 12.0391 2.4808 18 14 4.3509 10.4680 2.9769 19 1 5.5837 11.2839 2.8363 20 1 3.9306 10.4475 4.4011 21 1 4.6206 9.0809 2.5205 22 6 4.1597 10.2624 -1.4372 23 9 3.0023 10.2218 -2.2223 24 9 4.6861 11.5585 -1.4492 25 9 5.1052 9.3702 -1.9541 26 6 4.0677 2.5098 0.0011 27 6 3.4383 1.2808 -0.0005 28 8 4.1768 0.1388 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2092 2.3136 0.0050 33 1 1.3149 4.5069 0.0011 34 1 5.0467 5.0538 0.0016 35 1 2.1518 6.0652 0.0002 36 1 2.1853 8.5046 -0.0015 37 1 2.1919 12.2626 3.4222 38 1 5.1463 2.5658 0.0019 39 1 4.3894 -0.1921 0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:55 Heat of formation + Delta-G solvation = -254.498472 kcal Electronic energy + Delta-G solvation = -29539.071094 eV Core-core repulsion = 24610.684231 eV Total energy + Delta-G solvation = -4928.386864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.87742 -48.38684 -48.36732 -41.44164 -40.62052 -38.92878 -37.92451 -36.61357 -34.50274 -34.28770 -31.60725 -31.13127 -29.88176 -28.00780 -26.89778 -25.19924 -23.77315 -23.11607 -22.04664 -20.92006 -19.88713 -19.51944 -19.33362 -18.73062 -18.52142 -18.40815 -18.17700 -17.34723 -16.96123 -16.72877 -16.10725 -15.88273 -15.67223 -15.55736 -15.31573 -15.25842 -15.02805 -14.98717 -14.83274 -14.74766 -14.57252 -14.51594 -14.29501 -13.76812 -13.65514 -13.59360 -13.14668 -13.03784 -12.72801 -12.58584 -12.34855 -12.17889 -11.99045 -11.84742 -11.63467 -11.13048 -10.91064 -10.83253 -10.12720 -9.91136 -8.83446 -8.55528 -6.73799 -0.48578 0.18737 0.91917 1.25908 1.32408 1.42449 1.93269 2.16273 2.16816 2.25280 2.33367 2.72648 2.93993 3.15985 3.31344 3.34042 3.49949 3.70055 3.78015 4.00127 4.12208 4.14812 4.25926 4.39493 4.39854 4.45756 4.56402 4.72478 4.76905 4.93257 5.00678 5.03854 5.18041 5.35686 5.47913 5.57824 5.59127 5.88049 6.22561 6.43126 6.74095 6.83355 6.99652 7.31024 8.56938 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.002527 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.875813 B =11079.690867 C =11535.410574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.105 3.895 4 C -0.194 4.194 5 C -0.067 4.067 6 C -0.104 4.104 7 C -0.011 4.011 8 C -0.213 4.213 9 C 0.527 3.473 10 O -0.587 6.587 11 N -0.705 5.705 12 C 0.210 3.790 13 H 0.077 0.923 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.064 3.936 17 N -0.897 5.897 18 Si 0.918 3.082 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.259 1.259 22 C 0.439 3.561 23 F -0.186 7.186 24 F -0.186 7.186 25 F -0.193 7.193 26 C -0.086 4.086 27 C 0.057 3.943 28 O -0.499 6.499 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.414 0.586 37 H 0.281 0.719 38 H 0.149 0.851 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -22.795 -1.761 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.059 3.941 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.105 4.105 7 C -0.031 4.031 8 C -0.233 4.233 9 C 0.318 3.682 10 O -0.470 6.470 11 N -0.356 5.356 12 C 0.104 3.896 13 H 0.095 0.905 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.742 3.258 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.184 1.184 22 C 0.383 3.617 23 F -0.168 7.168 24 F -0.167 7.167 25 F -0.175 7.175 26 C -0.105 4.105 27 C 0.012 3.988 28 O -0.310 6.310 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.178 0.822 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.167 0.833 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.499 -22.763 -2.222 23.137 hybrid contribution 0.119 0.340 0.720 0.805 sum -3.381 -22.423 -1.502 22.726 Atomic orbital electron populations 1.23437 0.76196 1.05795 1.02624 1.86089 1.23601 1.26162 1.87935 1.19868 0.91883 0.85670 0.96716 1.21375 1.01606 0.90816 1.07492 1.21551 0.93284 0.98660 0.94962 1.18767 0.93651 0.91758 1.06277 1.22262 0.99995 0.90489 0.90359 1.22963 1.01901 0.90173 1.08310 1.19188 0.87125 0.86247 0.75649 1.90758 1.15399 1.88552 1.52258 1.46900 1.11274 1.04467 1.72944 1.19719 0.97717 0.84983 0.87146 0.90525 1.20652 1.19448 1.21613 0.95806 0.91473 1.25523 0.96721 0.93710 0.98264 1.69917 1.35447 1.33511 1.14304 0.86155 0.80342 0.80331 0.79017 1.18961 1.19301 1.18372 1.21632 0.73808 0.74363 0.91911 1.93077 1.49880 1.96208 1.77637 1.93097 1.86936 1.39643 1.97037 1.93148 1.66434 1.68579 1.89340 1.21586 1.01229 0.90001 0.97655 1.17710 0.86668 0.86695 1.07712 1.84852 1.72034 1.39016 1.35130 0.86332 0.91151 0.91515 0.82021 0.82840 0.85682 0.82203 0.74776 0.90962 0.83339 0.73810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.58 10.26 -77.48 -0.80 -6.37 16 3 C 0.11 1.95 6.71 22.71 0.15 2.10 16 4 C -0.19 -2.99 9.01 22.30 0.20 -2.79 16 5 C -0.07 -1.15 9.40 22.57 0.21 -0.94 16 6 C -0.10 -2.17 5.87 -20.15 -0.12 -2.29 16 7 C -0.01 -0.28 9.45 23.82 0.23 -0.05 16 8 C -0.21 -5.83 9.41 23.61 0.22 -5.61 16 9 C 0.53 19.96 7.39 86.33 0.64 20.59 16 10 O -0.59 -26.40 14.80 -4.42 -0.07 -26.47 16 11 N -0.70 -27.63 4.90 -450.49 -2.21 -29.84 16 12 C 0.21 9.63 1.71 44.24 0.08 9.71 16 13 H 0.08 3.76 4.73 -2.39 -0.01 3.74 16 14 C -0.54 -27.45 8.52 25.60 0.22 -27.23 16 15 H 0.07 3.74 8.00 -2.91 -0.02 3.72 16 16 C 0.06 3.35 5.47 84.66 0.46 3.81 16 17 N -0.90 -49.17 13.96 21.45 0.30 -48.87 16 18 Si 0.92 41.20 26.99 68.60 1.85 43.06 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.26 -11.83 6.82 99.48 0.68 -11.15 16 22 C 0.44 19.59 2.83 71.98 0.20 19.80 16 23 F -0.19 -7.93 16.93 44.97 0.76 -7.17 16 24 F -0.19 -8.49 16.89 44.97 0.76 -7.73 16 25 F -0.19 -8.58 15.83 44.97 0.71 -7.86 16 26 C -0.09 -1.72 9.72 22.65 0.22 -1.50 16 27 C 0.06 1.15 6.71 22.52 0.15 1.30 16 28 O -0.50 -9.22 13.28 -79.48 -1.06 -10.27 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.42 7.65 -2.38 -0.02 0.40 16 31 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 32 H 0.16 1.55 6.27 -2.91 -0.02 1.53 16 33 H 0.15 2.06 6.15 -2.91 -0.02 2.04 16 34 H 0.13 3.41 7.52 -2.91 -0.02 3.39 16 35 H 0.16 3.19 6.06 -2.91 -0.02 3.17 16 36 H 0.41 14.13 8.57 -92.71 -0.79 13.33 16 37 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.40 3.74 9.06 -74.06 -0.67 3.07 16 Total: -1.00 -68.84 353.07 3.90 -64.94 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.33 Total: 18.46 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 3.98 Total: 18.12 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.91 Total: -78.71 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.92 Total: -43.12 kcal Atomic # 9 Polarization: -25.00 SS G_CDS: 2.23 Total: -22.76 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.85 Total: 43.06 kcal Total: -68.84 3.90 -64.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.557 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds