Wall clock time and date at job start Wed Apr 1 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46879 * 2 1 4 4 C 1.50701 * 109.46656 * 240.00321 * 2 1 3 5 5 O 1.21286 * 119.99408 * 239.99528 * 4 2 1 6 6 N 1.34770 * 120.00337 * 59.72336 * 4 2 1 7 7 C 1.46505 * 119.99974 * 180.27099 * 6 4 2 8 8 H 1.08994 * 109.47384 * 325.00172 * 7 6 4 9 9 C 1.50698 * 109.47237 * 204.99893 * 7 6 4 10 10 H 1.08001 * 120.00293 * 274.94413 * 9 7 6 11 11 C 1.37882 * 119.99997 * 94.94532 * 9 7 6 12 12 N 1.31511 * 120.00059 * 184.87769 * 11 9 7 13 13 Si 1.86801 * 119.99783 * 4.87640 * 11 9 7 14 14 H 1.48499 * 109.46747 * 84.80993 * 13 11 9 15 15 H 1.48496 * 109.46924 * 204.81185 * 13 11 9 16 16 H 1.48500 * 109.47326 * 324.81300 * 13 11 9 17 17 C 1.52998 * 109.46767 * 85.00356 * 7 6 4 18 18 F 1.39896 * 109.47823 * 54.93449 * 17 7 6 19 19 F 1.39903 * 109.46984 * 174.93572 * 17 7 6 20 20 F 1.39902 * 109.47199 * 294.93405 * 17 7 6 21 21 C 1.50698 * 109.47344 * 119.99937 * 2 1 3 22 22 C 1.38254 * 119.92706 * 59.72584 * 21 2 1 23 23 C 1.38230 * 120.14255 * 179.78193 * 22 21 2 24 24 C 1.38542 * 120.03011 * 0.47934 * 23 22 21 25 25 C 1.39266 * 119.82823 * 359.77585 * 24 23 22 26 26 C 1.38230 * 119.93101 * 240.00021 * 21 2 1 27 27 O 1.36497 * 108.64516 * 179.97438 * 25 24 23 28 28 C 1.43989 * 105.48435 * 17.27674 * 27 25 24 29 29 O 1.36506 * 131.53730 * 179.73193 * 24 23 22 30 30 H 1.09001 * 109.47318 * 60.00165 * 1 2 3 31 31 H 1.09005 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47407 * 300.00039 * 1 2 3 33 33 H 0.97003 * 120.00412 * 0.27182 * 6 4 2 34 34 H 0.97003 * 120.00135 * 179.97438 * 12 11 9 35 35 H 1.08006 * 119.92837 * 359.97438 * 22 21 2 36 36 H 1.08009 * 119.98636 * 180.25439 * 23 22 21 37 37 H 1.08007 * 119.98241 * 359.95364 * 26 21 2 38 38 H 1.09002 * 110.57267 * 91.44669 * 28 27 25 39 39 H 1.09004 * 110.57320 * 214.32134 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7020 -0.2532 -2.4546 7 6 2.1854 -0.9473 -3.6508 8 1 3.1851 -1.3394 -3.4643 9 6 2.2319 0.0178 -4.8072 10 1 1.3451 0.1971 -5.3970 11 6 3.4067 0.6720 -5.1124 12 7 3.4243 1.5846 -6.0591 13 14 4.9732 0.2618 -4.1811 14 1 5.6275 -0.9150 -4.8072 15 1 5.8957 1.4245 -4.2281 16 1 4.6415 -0.0501 -2.7676 17 6 1.2395 -2.1016 -3.9877 18 9 -0.0656 -1.6137 -4.1136 19 9 1.6349 -2.6920 -5.1928 20 9 1.2842 -3.0549 -2.9647 21 6 2.0324 -0.7104 1.2304 22 6 1.6928 -2.0324 1.4506 23 6 2.1549 -2.6896 2.5755 24 6 2.9519 -2.0213 3.4906 25 6 3.2896 -0.6881 3.2715 26 6 2.8270 -0.0372 2.1394 27 8 4.0728 -0.2609 4.3046 28 6 4.5474 -1.4584 4.9480 29 8 3.5234 -2.4293 4.6612 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1443 0.5355 -2.5436 34 1 4.2507 2.0451 -6.2736 35 1 1.0677 -2.5536 0.7406 36 1 1.8914 -3.7236 2.7429 37 1 3.0877 0.9966 1.9667 38 1 5.5010 -1.7701 4.5218 39 1 4.6392 -1.3049 6.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928802644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:37 Heat of formation + Delta-G solvation = -232.956670 kcal Electronic energy + Delta-G solvation = -31138.966745 eV Core-core repulsion = 26211.514004 eV Total energy + Delta-G solvation = -4927.452741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.09047 -46.61523 -46.56925 -42.21953 -39.75216 -37.77026 -36.35921 -34.82016 -33.71880 -32.53294 -30.60598 -29.54713 -28.49657 -25.90844 -25.00387 -24.57592 -23.00482 -22.51029 -21.10897 -19.79975 -18.38253 -17.95998 -17.61738 -17.49964 -17.43303 -16.82489 -16.60979 -16.39633 -16.07795 -15.34683 -14.84249 -14.53148 -14.20779 -14.01315 -13.92249 -13.61658 -13.49237 -13.48649 -13.15273 -13.07225 -13.04770 -12.96751 -12.78748 -12.72816 -12.68971 -12.54106 -12.25330 -11.85613 -11.64529 -11.54487 -11.17643 -10.92060 -10.81301 -10.70824 -10.18670 -9.85666 -9.38213 -9.01551 -8.81899 -8.45192 -8.03903 -6.57477 -4.72524 1.11130 1.22824 2.64106 3.07133 3.08115 3.17684 3.25744 3.31975 3.48647 3.76941 3.91442 4.06089 4.43300 4.51872 4.56599 4.74322 4.81193 4.85430 5.08642 5.09439 5.14409 5.16776 5.23457 5.28786 5.35602 5.47626 5.53225 5.71126 5.82158 5.99168 6.04127 6.09327 6.22747 6.28769 6.39108 6.54593 6.85598 7.07148 7.09825 7.80830 8.26148 8.47857 8.78971 8.98577 10.50952 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.003588 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.369305 B = 7801.720428 C = 8639.729181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 H 0.106 0.894 4 C 0.504 3.496 5 O -0.535 6.535 6 N -0.710 5.710 7 C 0.204 3.796 8 H 0.089 0.911 9 C -0.538 4.538 10 H 0.094 0.906 11 C 0.101 3.899 12 N -0.859 5.859 13 Si 0.866 3.134 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.254 1.254 17 C 0.438 3.562 18 F -0.192 7.192 19 F -0.182 7.182 20 F -0.196 7.196 21 C -0.049 4.049 22 C -0.070 4.070 23 C -0.099 4.099 24 C 0.025 3.975 25 C 0.025 3.975 26 C -0.092 4.092 27 O -0.312 6.312 28 C 0.214 3.786 29 O -0.312 6.312 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.276 0.724 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -2.508 16.619 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 H 0.124 0.876 4 C 0.289 3.711 5 O -0.412 6.412 6 N -0.362 5.362 7 C 0.100 3.900 8 H 0.107 0.893 9 C -0.575 4.575 10 H 0.112 0.888 11 C -0.109 4.109 12 N -0.491 5.491 13 Si 0.691 3.309 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.177 1.177 17 C 0.382 3.618 18 F -0.174 7.174 19 F -0.163 7.163 20 F -0.178 7.178 21 C -0.050 4.050 22 C -0.088 4.088 23 C -0.118 4.118 24 C -0.019 4.019 25 C -0.019 4.019 26 C -0.110 4.110 27 O -0.228 6.228 28 C 0.102 3.898 29 O -0.229 6.229 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.939 -3.064 16.781 17.168 hybrid contribution 0.755 0.061 0.426 0.869 sum -1.184 -3.003 17.207 17.508 Atomic orbital electron populations 1.21800 0.91730 1.03201 1.03033 1.20323 0.97891 1.00458 0.90765 0.87613 1.20585 0.80785 0.84805 0.84927 1.90695 1.37597 1.26137 1.86756 1.47387 1.52806 1.31327 1.04645 1.19995 0.92994 0.89956 0.87021 0.89300 1.20731 1.00004 1.24985 1.11821 0.88838 1.24984 0.98858 0.93104 0.93981 1.69852 1.28677 1.21931 1.28684 0.86966 0.82950 0.79074 0.81940 1.19041 1.20510 1.17750 1.21728 0.81170 0.84957 0.73953 1.93065 1.40557 1.87940 1.95838 1.93110 1.90746 1.85453 1.47039 1.93139 1.96489 1.67953 1.60175 1.19063 0.97142 0.94263 0.94494 1.20744 0.99006 0.93601 0.95496 1.20025 0.99273 1.00230 0.92273 1.19777 1.01208 0.92917 0.87995 1.19622 0.98660 0.92482 0.91149 1.19873 0.99677 1.00872 0.90603 1.87333 1.63900 1.30489 1.41093 1.25570 0.90831 0.73554 0.99865 1.87332 1.49642 1.49412 1.36493 0.91073 0.91754 0.91388 0.76276 0.91412 0.84463 0.84829 0.84807 0.90089 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.90 37.16 0.33 -1.18 16 2 C -0.07 -0.97 2.90 -92.92 -0.27 -1.24 16 3 H 0.11 1.22 7.87 -51.93 -0.41 0.82 16 4 C 0.50 9.06 6.68 -10.99 -0.07 8.98 16 5 O -0.53 -11.38 13.69 5.55 0.08 -11.30 16 6 N -0.71 -13.34 4.80 -54.93 -0.26 -13.61 16 7 C 0.20 4.52 1.71 -69.08 -0.12 4.40 16 8 H 0.09 2.12 4.73 -51.93 -0.25 1.88 16 9 C -0.54 -13.33 8.52 -34.44 -0.29 -13.62 16 10 H 0.09 2.51 8.00 -52.49 -0.42 2.09 16 11 C 0.10 2.58 5.47 -17.82 -0.10 2.48 16 12 N -0.86 -23.13 13.96 55.43 0.77 -22.36 16 13 Si 0.87 19.80 26.99 -169.99 -4.59 15.21 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.25 -5.86 6.82 56.52 0.39 -5.47 16 17 C 0.44 9.42 2.83 37.16 0.11 9.52 16 18 F -0.19 -3.95 16.93 2.25 0.04 -3.91 16 19 F -0.18 -4.06 16.89 2.25 0.04 -4.02 16 20 F -0.20 -4.14 15.83 2.25 0.04 -4.10 16 21 C -0.05 -0.68 4.39 -104.62 -0.46 -1.14 16 22 C -0.07 -0.97 7.93 -39.58 -0.31 -1.29 16 23 C -0.10 -1.31 10.06 -39.47 -0.40 -1.71 16 24 C 0.03 0.35 7.15 -39.09 -0.28 0.07 16 25 C 0.02 0.35 7.15 -39.09 -0.28 0.07 16 26 C -0.09 -1.24 9.68 -39.47 -0.38 -1.62 16 27 O -0.31 -4.02 11.40 -45.68 -0.52 -4.54 16 28 C 0.21 2.09 8.89 101.05 0.90 2.99 16 29 O -0.31 -3.98 11.40 -45.71 -0.52 -4.50 16 30 H 0.07 0.72 7.55 -51.93 -0.39 0.33 16 31 H 0.06 0.72 7.36 -51.93 -0.38 0.33 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 6.66 8.00 -40.82 -0.33 6.33 16 34 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.14 1.86 7.50 -52.48 -0.39 1.47 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.13 1.56 7.94 -52.48 -0.42 1.14 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -30.24 344.96 -5.19 -35.43 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -3.83 Total: 5.80 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.63 Total: 6.71 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.51 Total: -35.96 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.97 Total: -20.35 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 0.11 Total: -12.04 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.59 Total: 15.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.24 -5.19 -35.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928802644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.528 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds