Wall clock time and date at job start Wed Apr 1 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46879 * 2 1 4 4 C 1.50701 * 109.46656 * 240.00321 * 2 1 3 5 5 O 1.21286 * 119.99408 * 239.99528 * 4 2 1 6 6 N 1.34770 * 120.00337 * 59.72336 * 4 2 1 7 7 C 1.46505 * 119.99974 * 180.27099 * 6 4 2 8 8 H 1.08994 * 109.47384 * 325.00172 * 7 6 4 9 9 C 1.50698 * 109.47237 * 204.99893 * 7 6 4 10 10 H 1.08001 * 120.00293 * 274.94413 * 9 7 6 11 11 C 1.37882 * 119.99997 * 94.94532 * 9 7 6 12 12 N 1.31511 * 120.00059 * 184.87769 * 11 9 7 13 13 Si 1.86801 * 119.99783 * 4.87640 * 11 9 7 14 14 H 1.48499 * 109.46747 * 84.80993 * 13 11 9 15 15 H 1.48496 * 109.46924 * 204.81185 * 13 11 9 16 16 H 1.48500 * 109.47326 * 324.81300 * 13 11 9 17 17 C 1.52998 * 109.46767 * 85.00356 * 7 6 4 18 18 F 1.39896 * 109.47823 * 54.93449 * 17 7 6 19 19 F 1.39903 * 109.46984 * 174.93572 * 17 7 6 20 20 F 1.39902 * 109.47199 * 294.93405 * 17 7 6 21 21 C 1.50698 * 109.47344 * 119.99937 * 2 1 3 22 22 C 1.38254 * 119.92706 * 59.72584 * 21 2 1 23 23 C 1.38230 * 120.14255 * 179.78193 * 22 21 2 24 24 C 1.38542 * 120.03011 * 0.47934 * 23 22 21 25 25 C 1.39266 * 119.82823 * 359.77585 * 24 23 22 26 26 C 1.38230 * 119.93101 * 240.00021 * 21 2 1 27 27 O 1.36497 * 108.64516 * 179.97438 * 25 24 23 28 28 C 1.43989 * 105.48435 * 17.27674 * 27 25 24 29 29 O 1.36506 * 131.53730 * 179.73193 * 24 23 22 30 30 H 1.09001 * 109.47318 * 60.00165 * 1 2 3 31 31 H 1.09005 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47407 * 300.00039 * 1 2 3 33 33 H 0.97003 * 120.00412 * 0.27182 * 6 4 2 34 34 H 0.97003 * 120.00135 * 179.97438 * 12 11 9 35 35 H 1.08006 * 119.92837 * 359.97438 * 22 21 2 36 36 H 1.08009 * 119.98636 * 180.25439 * 23 22 21 37 37 H 1.08007 * 119.98241 * 359.95364 * 26 21 2 38 38 H 1.09002 * 110.57267 * 91.44669 * 28 27 25 39 39 H 1.09004 * 110.57320 * 214.32134 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7020 -0.2532 -2.4546 7 6 2.1854 -0.9473 -3.6508 8 1 3.1851 -1.3394 -3.4643 9 6 2.2319 0.0178 -4.8072 10 1 1.3451 0.1971 -5.3970 11 6 3.4067 0.6720 -5.1124 12 7 3.4243 1.5846 -6.0591 13 14 4.9732 0.2618 -4.1811 14 1 5.6275 -0.9150 -4.8072 15 1 5.8957 1.4245 -4.2281 16 1 4.6415 -0.0501 -2.7676 17 6 1.2395 -2.1016 -3.9877 18 9 -0.0656 -1.6137 -4.1136 19 9 1.6349 -2.6920 -5.1928 20 9 1.2842 -3.0549 -2.9647 21 6 2.0324 -0.7104 1.2304 22 6 1.6928 -2.0324 1.4506 23 6 2.1549 -2.6896 2.5755 24 6 2.9519 -2.0213 3.4906 25 6 3.2896 -0.6881 3.2715 26 6 2.8270 -0.0372 2.1394 27 8 4.0728 -0.2609 4.3046 28 6 4.5474 -1.4584 4.9480 29 8 3.5234 -2.4293 4.6612 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1443 0.5355 -2.5436 34 1 4.2507 2.0451 -6.2736 35 1 1.0677 -2.5536 0.7406 36 1 1.8914 -3.7236 2.7429 37 1 3.0877 0.9966 1.9667 38 1 5.5010 -1.7701 4.5218 39 1 4.6392 -1.3049 6.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928802644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:37 Heat of formation + Delta-G solvation = -252.131717 kcal Electronic energy + Delta-G solvation = -31139.798238 eV Core-core repulsion = 26211.514004 eV Total energy + Delta-G solvation = -4928.284234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.83984 -48.34569 -48.33282 -43.14672 -41.08795 -38.93229 -37.29205 -36.52653 -34.89807 -34.31073 -31.61576 -31.01838 -29.65622 -26.87695 -26.72999 -25.64586 -24.02451 -23.79742 -22.63811 -21.23529 -20.02692 -19.31705 -18.94602 -18.80323 -18.46335 -18.39416 -18.35569 -17.46816 -17.39595 -16.84056 -16.03457 -15.79950 -15.47312 -15.34018 -15.23055 -15.17885 -14.88005 -14.84046 -14.78819 -14.57664 -14.53491 -14.48217 -14.34257 -14.02783 -13.97764 -13.72786 -13.55371 -13.23362 -13.01344 -12.66540 -12.54108 -12.46712 -11.99627 -11.91859 -11.80056 -11.69887 -11.05001 -10.73095 -10.07277 -9.85239 -9.03278 -8.54342 -6.71741 0.08147 0.21812 1.25415 1.32725 1.41566 1.62589 1.71942 2.06719 2.16674 2.21516 2.50339 2.60423 2.97001 3.32102 3.37872 3.45867 3.52207 3.56986 3.80256 3.94065 4.02224 4.10962 4.15838 4.26145 4.31135 4.38294 4.49493 4.54948 4.86573 4.92395 4.97355 5.02791 5.04970 5.19598 5.32484 5.38563 5.49665 5.54036 5.88846 6.10885 6.45474 6.75589 7.01271 7.34626 8.58157 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.003588 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.369305 B = 7801.720428 C = 8639.729181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 H 0.130 0.870 4 C 0.502 3.498 5 O -0.568 6.568 6 N -0.707 5.707 7 C 0.211 3.789 8 H 0.076 0.924 9 C -0.537 4.537 10 H 0.067 0.933 11 C 0.066 3.934 12 N -0.898 5.898 13 Si 0.916 3.084 14 H -0.268 1.268 15 H -0.271 1.271 16 H -0.257 1.257 17 C 0.439 3.561 18 F -0.186 7.186 19 F -0.188 7.188 20 F -0.192 7.192 21 C -0.059 4.059 22 C -0.079 4.079 23 C -0.105 4.105 24 C 0.014 3.986 25 C 0.013 3.987 26 C -0.097 4.097 27 O -0.323 6.323 28 C 0.204 3.796 29 O -0.323 6.323 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.414 0.586 34 H 0.280 0.720 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 -2.222 18.613 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 H 0.147 0.853 4 C 0.290 3.710 5 O -0.447 6.447 6 N -0.360 5.360 7 C 0.106 3.894 8 H 0.093 0.907 9 C -0.574 4.574 10 H 0.085 0.915 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.740 3.260 14 H -0.193 1.193 15 H -0.196 1.196 16 H -0.181 1.181 17 C 0.384 3.616 18 F -0.167 7.167 19 F -0.170 7.170 20 F -0.173 7.173 21 C -0.059 4.059 22 C -0.097 4.097 23 C -0.124 4.124 24 C -0.030 4.030 25 C -0.031 4.031 26 C -0.115 4.115 27 O -0.240 6.240 28 C 0.094 3.906 29 O -0.240 6.240 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.252 0.748 34 H 0.090 0.910 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.114 0.886 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.843 -2.764 18.795 19.087 hybrid contribution 0.690 -0.099 -0.113 0.706 sum -1.153 -2.863 18.682 18.936 Atomic orbital electron populations 1.21832 0.89619 1.03392 1.04617 1.20323 0.99493 1.00721 0.87823 0.85267 1.21322 0.79754 0.84420 0.85548 1.90682 1.39008 1.27762 1.87227 1.46969 1.53149 1.31697 1.04176 1.19682 0.92847 0.89572 0.87318 0.90677 1.20678 0.99023 1.25217 1.12517 0.91458 1.25495 1.01018 0.93021 0.94549 1.69919 1.29573 1.23400 1.30375 0.86191 0.80393 0.78899 0.80550 1.19275 1.19590 1.18077 1.21613 0.81391 0.84838 0.73804 1.93076 1.39983 1.87856 1.95797 1.93098 1.90852 1.85554 1.47470 1.93148 1.96498 1.67745 1.59937 1.19156 0.97572 0.94419 0.94792 1.20823 0.99271 0.93886 0.95723 1.20223 0.99048 1.01035 0.92061 1.19976 1.01374 0.93173 0.88460 1.19830 0.98968 0.92703 0.91610 1.20076 0.99280 1.01725 0.90432 1.87306 1.63864 1.31940 1.40885 1.26096 0.90447 0.72118 1.01958 1.87307 1.50365 1.50371 1.35969 0.90328 0.92314 0.88974 0.74846 0.91050 0.84699 0.83312 0.83126 0.88592 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.90 71.98 0.64 -1.95 16 2 C -0.06 -1.52 2.90 -12.29 -0.04 -1.56 16 3 H 0.13 2.57 7.87 -2.39 -0.02 2.55 16 4 C 0.50 17.26 6.68 87.66 0.59 17.84 16 5 O -0.57 -23.58 13.69 -3.05 -0.04 -23.62 16 6 N -0.71 -25.68 4.80 -446.10 -2.14 -27.82 16 7 C 0.21 9.25 1.71 44.24 0.08 9.33 16 8 H 0.08 3.54 4.73 -2.39 -0.01 3.53 16 9 C -0.54 -26.66 8.52 25.60 0.22 -26.44 16 10 H 0.07 3.67 8.00 -2.91 -0.02 3.64 16 11 C 0.07 3.35 5.47 84.66 0.46 3.81 16 12 N -0.90 -48.67 13.96 21.45 0.30 -48.37 16 13 Si 0.92 40.58 26.99 68.60 1.85 42.43 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 16 H -0.26 -11.41 6.82 99.48 0.68 -10.73 16 17 C 0.44 18.66 2.83 71.98 0.20 18.86 16 18 F -0.19 -7.46 16.93 44.97 0.76 -6.70 16 19 F -0.19 -8.35 16.89 44.97 0.76 -7.59 16 20 F -0.19 -7.94 15.83 44.97 0.71 -7.23 16 21 C -0.06 -1.52 4.39 -19.86 -0.09 -1.61 16 22 C -0.08 -2.09 7.93 22.27 0.18 -1.91 16 23 C -0.11 -2.67 10.06 22.34 0.22 -2.44 16 24 C 0.01 0.38 7.15 22.59 0.16 0.54 16 25 C 0.01 0.35 7.15 22.59 0.16 0.51 16 26 C -0.10 -2.43 9.68 22.34 0.22 -2.21 16 27 O -0.32 -7.74 11.40 -76.01 -0.87 -8.61 16 28 C 0.20 3.53 8.89 113.37 1.01 4.54 16 29 O -0.32 -7.71 11.40 -76.12 -0.87 -8.58 16 30 H 0.08 1.37 7.55 -2.39 -0.02 1.36 16 31 H 0.06 1.18 7.36 -2.38 -0.02 1.17 16 32 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.41 13.08 8.00 -92.71 -0.74 12.34 16 34 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.14 3.56 7.50 -2.91 -0.02 3.54 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.15 3.13 7.94 -2.91 -0.02 3.11 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.49 344.96 4.84 -59.65 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.36 Total: 19.14 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 4.01 Total: 17.30 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.84 Total: -76.19 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.78 Total: -40.81 kcal Atomic # 9 Polarization: -23.76 SS G_CDS: 2.23 Total: -21.52 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.85 Total: 42.43 kcal Total: -64.49 4.84 -59.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928802644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.481 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds