Wall clock time and date at job start Wed Apr 1 2020 03:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 O 1.42892 * 109.47361 * 239.99892 * 2 1 3 5 5 C 1.35664 * 117.00100 * 84.88503 * 4 2 1 6 6 C 1.39088 * 119.88283 * 174.27127 * 5 4 2 7 7 C 1.37119 * 120.10905 * 179.72073 * 6 5 4 8 8 C 1.40033 * 119.88521 * 0.57460 * 7 6 5 9 9 C 1.46862 * 120.11619 * 179.67837 * 8 7 6 10 10 O 1.21303 * 119.99488 * 0.02562 * 9 8 7 11 11 C 1.40041 * 119.77506 * 359.70088 * 8 7 6 12 12 C 1.37118 * 119.88070 * 0.02562 * 11 8 7 13 13 C 1.50704 * 109.47356 * 119.99447 * 2 1 3 14 14 O 1.21283 * 119.99724 * 119.99908 * 13 2 1 15 15 N 1.34775 * 119.99949 * 300.00562 * 13 2 1 16 16 C 1.46500 * 119.99967 * 179.97438 * 15 13 2 17 17 H 1.08996 * 109.47209 * 325.00710 * 16 15 13 18 18 C 1.50698 * 109.47394 * 204.99771 * 16 15 13 19 19 H 1.08000 * 119.99585 * 0.02562 * 18 16 15 20 20 C 1.37873 * 120.00061 * 180.02562 * 18 16 15 21 21 N 1.31512 * 120.00213 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00077 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47285 * 59.99656 * 22 20 18 24 24 H 1.48504 * 109.47148 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46847 * 299.99575 * 22 20 18 26 26 C 1.53007 * 109.46865 * 84.99897 * 16 15 13 27 27 F 1.39898 * 109.46676 * 60.00293 * 26 16 15 28 28 F 1.39897 * 109.47120 * 300.00428 * 26 16 15 29 29 F 1.39898 * 109.47279 * 179.97438 * 26 16 15 30 30 H 1.08999 * 109.47719 * 300.00177 * 1 2 3 31 31 H 1.08999 * 109.47685 * 60.00285 * 1 2 3 32 32 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.94441 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.05570 * 180.27437 * 7 6 5 35 35 H 1.07995 * 120.00554 * 180.02562 * 9 8 7 36 36 H 1.07993 * 120.05809 * 179.97438 * 11 8 7 37 37 H 1.07996 * 119.94239 * 179.97438 * 12 11 8 38 38 H 0.96994 * 120.00131 * 359.97438 * 15 13 2 39 39 H 0.97005 * 120.00246 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1100 0.0607 -2.3027 6 6 2.6783 -0.5007 -3.4413 7 6 2.7802 0.2354 -4.5936 8 6 2.3220 1.5584 -4.6193 9 6 2.4352 2.3537 -5.8487 10 8 2.9258 1.8645 -6.8444 11 6 1.7559 2.1207 -3.4684 12 6 1.6535 1.3743 -2.3228 13 6 2.0323 -0.7103 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2498 2.4546 16 6 2.1946 -0.9406 3.6508 17 1 2.2311 -2.0134 3.4614 18 6 1.2647 -0.6654 4.8043 19 1 0.3968 -0.0389 4.6606 20 6 1.5220 -1.2133 6.0431 21 7 2.5791 -1.9758 6.2182 22 14 0.3689 -0.8728 7.4727 23 1 -0.9921 -1.3638 7.1388 24 1 0.8643 -1.5719 8.6856 25 1 0.3184 0.5889 7.7305 26 6 3.5974 -0.4356 3.9948 27 9 3.5505 0.9413 4.2380 28 9 4.4606 -0.6910 2.9240 29 9 4.0631 -1.0948 5.1375 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.0353 -1.5198 -3.4191 34 1 3.2175 -0.2029 -5.4785 35 1 2.0816 3.3740 -5.8664 36 1 1.4015 3.1407 -3.4830 37 1 1.2175 1.8071 -1.4346 38 1 1.1493 0.5390 2.5435 39 1 2.7603 -2.3610 7.0898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:30 Heat of formation + Delta-G solvation = -213.836303 kcal Electronic energy + Delta-G solvation = -30318.290932 eV Core-core repulsion = 25391.667313 eV Total energy + Delta-G solvation = -4926.623620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.44762 -46.10456 -45.70494 -40.83947 -39.59059 -38.72027 -37.15610 -34.80854 -33.04651 -32.21831 -31.21368 -30.47971 -28.36031 -25.36994 -24.68981 -24.02017 -23.22258 -21.77538 -20.97830 -19.92828 -18.61793 -17.95500 -17.09986 -17.00692 -16.76329 -16.72182 -16.07817 -15.76731 -15.70825 -15.29769 -15.01145 -14.72920 -14.46630 -14.39114 -13.87731 -13.79176 -13.48006 -13.28944 -13.02749 -12.85611 -12.68016 -12.53049 -12.50153 -12.44760 -12.36990 -12.09485 -11.94065 -11.87162 -11.29246 -11.23231 -11.06269 -10.94500 -10.87451 -10.49572 -10.06769 -9.79943 -9.44024 -9.35150 -8.82261 -8.49826 -8.44022 -6.32536 -4.57977 0.43085 1.06802 2.19235 2.61283 2.92329 3.13644 3.19074 3.20455 3.53155 3.73874 4.00372 4.12439 4.36877 4.44553 4.49038 4.61966 4.77072 4.83976 4.87141 4.91911 4.99434 5.17513 5.28074 5.43292 5.45152 5.67079 5.72737 5.76324 5.83968 5.93531 5.98059 6.09130 6.10039 6.37367 6.78072 6.94368 7.12032 7.16788 7.33593 7.52879 8.09007 8.37909 8.64591 9.10227 10.58881 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.002472 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.952702 B =11322.616122 C =11722.247997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 H 0.100 0.900 4 O -0.276 6.276 5 C 0.176 3.824 6 C -0.167 4.167 7 C -0.017 4.017 8 C -0.244 4.244 9 C 0.387 3.613 10 O -0.471 6.471 11 C -0.023 4.023 12 C -0.231 4.231 13 C 0.509 3.491 14 O -0.510 6.510 15 N -0.705 5.705 16 C 0.247 3.753 17 H 0.087 0.913 18 C -0.555 4.555 19 H 0.078 0.922 20 C 0.065 3.935 21 N -0.838 5.838 22 Si 0.917 3.083 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.416 3.584 27 F -0.209 7.209 28 F -0.218 7.218 29 F -0.135 7.135 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.399 0.601 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 9.095 -14.118 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.004 3.996 3 H 0.118 0.882 4 O -0.187 6.187 5 C 0.128 3.872 6 C -0.185 4.185 7 C -0.036 4.036 8 C -0.246 4.246 9 C 0.247 3.753 10 O -0.345 6.345 11 C -0.041 4.041 12 C -0.250 4.250 13 C 0.292 3.708 14 O -0.384 6.384 15 N -0.356 5.356 16 C 0.142 3.858 17 H 0.105 0.895 18 C -0.591 4.591 19 H 0.096 0.904 20 C -0.144 4.144 21 N -0.471 5.471 22 Si 0.743 3.257 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.198 1.198 26 C 0.360 3.640 27 F -0.191 7.191 28 F -0.200 7.200 29 F -0.116 7.116 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.234 0.766 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.102 7.756 -14.514 16.960 hybrid contribution -0.593 0.913 1.206 1.625 sum -4.695 8.669 -13.307 16.561 Atomic orbital electron populations 1.22349 0.92339 1.04805 1.03842 1.22387 0.95933 0.97176 0.84097 0.88246 1.86213 1.79562 1.37132 1.15745 1.19537 0.90989 0.89967 0.86668 1.20385 1.04825 1.02250 0.91073 1.21101 0.92952 0.92394 0.97107 1.20794 1.09562 0.96904 0.97318 1.23880 0.73998 0.92203 0.85216 1.90530 1.34079 1.74157 1.35782 1.21031 0.93036 0.99103 0.90974 1.21223 1.08632 0.94481 1.00666 1.19922 0.81313 0.85393 0.84140 1.90760 1.36215 1.25258 1.86191 1.45958 1.52784 1.32048 1.04859 1.19779 0.87151 0.95521 0.83332 0.89535 1.20800 1.10605 1.34731 0.93000 0.90382 1.25087 0.95427 0.94609 0.99271 1.70383 1.23374 1.28558 1.24762 0.86248 0.80345 0.78763 0.80364 1.19733 1.20821 1.19785 1.23144 0.90996 0.74833 0.75056 1.92990 1.97053 1.34399 1.94646 1.93078 1.74660 1.93974 1.58251 1.93412 1.90060 1.79375 1.48778 0.89642 0.90896 0.90358 0.84275 0.84376 0.88242 0.84732 0.84376 0.76641 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.06 37.15 0.34 -1.43 16 2 C 0.06 0.85 2.64 -27.88 -0.07 0.77 16 3 H 0.10 1.07 6.30 -51.93 -0.33 0.74 16 4 O -0.28 -4.07 9.32 -38.60 -0.36 -4.43 16 5 C 0.18 2.13 6.61 -38.95 -0.26 1.87 16 6 C -0.17 -1.90 9.95 -39.67 -0.39 -2.29 16 7 C -0.02 -0.18 9.57 -39.32 -0.38 -0.55 16 8 C -0.24 -2.19 5.87 -105.06 -0.62 -2.80 16 9 C 0.39 3.12 11.44 34.22 0.39 3.51 16 10 O -0.47 -5.66 17.16 5.54 0.10 -5.56 16 11 C -0.02 -0.18 9.77 -39.31 -0.38 -0.56 16 12 C -0.23 -2.16 8.19 -39.68 -0.32 -2.48 16 13 C 0.51 9.42 6.77 -10.98 -0.07 9.34 16 14 O -0.51 -11.82 15.07 -14.36 -0.22 -12.04 16 15 N -0.70 -13.14 4.88 -54.93 -0.27 -13.41 16 16 C 0.25 5.83 2.21 -69.08 -0.15 5.67 16 17 H 0.09 2.31 7.58 -51.93 -0.39 1.91 16 18 C -0.55 -13.36 8.46 -34.44 -0.29 -13.65 16 19 H 0.08 1.74 7.74 -52.49 -0.41 1.33 16 20 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 21 N -0.84 -22.26 9.50 55.43 0.53 -21.73 16 22 Si 0.92 19.26 29.54 -169.99 -5.02 14.24 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C 0.42 10.29 2.81 37.16 0.10 10.39 16 27 F -0.21 -4.92 16.94 2.25 0.04 -4.88 16 28 F -0.22 -5.41 15.68 2.25 0.04 -5.37 16 29 F -0.14 -3.64 12.91 2.25 0.03 -3.61 16 30 H 0.08 0.73 7.56 -51.93 -0.39 0.34 16 31 H 0.07 0.58 6.89 -51.93 -0.36 0.22 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.14 1.32 7.64 -52.49 -0.40 0.91 16 35 H 0.10 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.14 1.03 5.40 -52.49 -0.28 0.75 16 38 H 0.40 6.07 7.96 -40.82 -0.32 5.74 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -32.32 348.54 -5.81 -38.13 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.71 Total: 4.08 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -2.21 Total: 9.33 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.26 Total: -35.14 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.48 Total: -22.03 kcal Atomic # 9 Polarization: -13.97 SS G_CDS: 0.10 Total: -13.87 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.32 -5.81 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.704 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds