Wall clock time and date at job start Wed Apr 1 2020 03:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 O 1.42892 * 109.47361 * 239.99892 * 2 1 3 5 5 C 1.35664 * 117.00100 * 84.88503 * 4 2 1 6 6 C 1.39088 * 119.88283 * 174.27127 * 5 4 2 7 7 C 1.37119 * 120.10905 * 179.72073 * 6 5 4 8 8 C 1.40033 * 119.88521 * 0.57460 * 7 6 5 9 9 C 1.46862 * 120.11619 * 179.67837 * 8 7 6 10 10 O 1.21303 * 119.99488 * 0.02562 * 9 8 7 11 11 C 1.40041 * 119.77506 * 359.70088 * 8 7 6 12 12 C 1.37118 * 119.88070 * 0.02562 * 11 8 7 13 13 C 1.50704 * 109.47356 * 119.99447 * 2 1 3 14 14 O 1.21283 * 119.99724 * 119.99908 * 13 2 1 15 15 N 1.34775 * 119.99949 * 300.00562 * 13 2 1 16 16 C 1.46500 * 119.99967 * 179.97438 * 15 13 2 17 17 H 1.08996 * 109.47209 * 325.00710 * 16 15 13 18 18 C 1.50698 * 109.47394 * 204.99771 * 16 15 13 19 19 H 1.08000 * 119.99585 * 0.02562 * 18 16 15 20 20 C 1.37873 * 120.00061 * 180.02562 * 18 16 15 21 21 N 1.31512 * 120.00213 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00077 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47285 * 59.99656 * 22 20 18 24 24 H 1.48504 * 109.47148 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46847 * 299.99575 * 22 20 18 26 26 C 1.53007 * 109.46865 * 84.99897 * 16 15 13 27 27 F 1.39898 * 109.46676 * 60.00293 * 26 16 15 28 28 F 1.39897 * 109.47120 * 300.00428 * 26 16 15 29 29 F 1.39898 * 109.47279 * 179.97438 * 26 16 15 30 30 H 1.08999 * 109.47719 * 300.00177 * 1 2 3 31 31 H 1.08999 * 109.47685 * 60.00285 * 1 2 3 32 32 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.94441 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.05570 * 180.27437 * 7 6 5 35 35 H 1.07995 * 120.00554 * 180.02562 * 9 8 7 36 36 H 1.07993 * 120.05809 * 179.97438 * 11 8 7 37 37 H 1.07996 * 119.94239 * 179.97438 * 12 11 8 38 38 H 0.96994 * 120.00131 * 359.97438 * 15 13 2 39 39 H 0.97005 * 120.00246 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1100 0.0607 -2.3027 6 6 2.6783 -0.5007 -3.4413 7 6 2.7802 0.2354 -4.5936 8 6 2.3220 1.5584 -4.6193 9 6 2.4352 2.3537 -5.8487 10 8 2.9258 1.8645 -6.8444 11 6 1.7559 2.1207 -3.4684 12 6 1.6535 1.3743 -2.3228 13 6 2.0323 -0.7103 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2498 2.4546 16 6 2.1946 -0.9406 3.6508 17 1 2.2311 -2.0134 3.4614 18 6 1.2647 -0.6654 4.8043 19 1 0.3968 -0.0389 4.6606 20 6 1.5220 -1.2133 6.0431 21 7 2.5791 -1.9758 6.2182 22 14 0.3689 -0.8728 7.4727 23 1 -0.9921 -1.3638 7.1388 24 1 0.8643 -1.5719 8.6856 25 1 0.3184 0.5889 7.7305 26 6 3.5974 -0.4356 3.9948 27 9 3.5505 0.9413 4.2380 28 9 4.4606 -0.6910 2.9240 29 9 4.0631 -1.0948 5.1375 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.0353 -1.5198 -3.4191 34 1 3.2175 -0.2029 -5.4785 35 1 2.0816 3.3740 -5.8664 36 1 1.4015 3.1407 -3.4830 37 1 1.2175 1.8071 -1.4346 38 1 1.1493 0.5390 2.5435 39 1 2.7603 -2.3610 7.0898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:29 Heat of formation + Delta-G solvation = -234.493110 kcal Electronic energy + Delta-G solvation = -30319.186679 eV Core-core repulsion = 25391.667313 eV Total energy + Delta-G solvation = -4927.519366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.44829 -48.08566 -47.75311 -41.80389 -40.63846 -39.80575 -38.05127 -36.54711 -34.66540 -33.36035 -32.03445 -31.29091 -30.03101 -26.63392 -26.22819 -25.03734 -24.03081 -23.28351 -21.99970 -21.31632 -19.52760 -19.48975 -18.90007 -18.69276 -18.48095 -17.81249 -17.38142 -17.14574 -16.86639 -16.66501 -16.19694 -15.86285 -15.39023 -15.31065 -15.11458 -14.99651 -14.96622 -14.60697 -14.50186 -14.44580 -14.32261 -14.29808 -14.05758 -13.92723 -13.66397 -13.41033 -13.23312 -13.07110 -12.85279 -12.75738 -12.60519 -12.22939 -12.10353 -11.81665 -11.62689 -10.85896 -10.73995 -10.68353 -10.16627 -10.13187 -9.31363 -8.21580 -6.53199 -0.29219 0.35534 1.43527 1.45492 1.49920 1.52098 1.57226 1.60693 2.34701 2.45761 2.56481 2.81720 2.93697 3.43058 3.45065 3.65315 3.75835 3.78522 3.80520 3.86794 3.92280 4.16415 4.19493 4.36970 4.45857 4.60710 4.66840 4.70970 4.87108 4.99692 5.12015 5.18533 5.24741 5.31132 5.37233 5.50583 5.63268 5.65430 6.24510 6.51007 6.57542 6.61604 7.13926 7.25482 8.70836 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.002472 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.952702 B =11322.616122 C =11722.247997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.074 3.926 3 H 0.132 0.868 4 O -0.310 6.310 5 C 0.150 3.850 6 C -0.187 4.187 7 C -0.030 4.030 8 C -0.250 4.250 9 C 0.396 3.604 10 O -0.517 6.517 11 C -0.006 4.006 12 C -0.229 4.229 13 C 0.502 3.498 14 O -0.567 6.567 15 N -0.694 5.694 16 C 0.253 3.747 17 H 0.046 0.954 18 C -0.559 4.559 19 H 0.100 0.900 20 C 0.013 3.987 21 N -0.876 5.876 22 Si 0.984 3.016 23 H -0.261 1.261 24 H -0.289 1.289 25 H -0.263 1.263 26 C 0.412 3.588 27 F -0.200 7.200 28 F -0.222 7.222 29 F -0.151 7.151 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.184 0.816 37 H 0.163 0.837 38 H 0.419 0.581 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 12.882 -14.583 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 H 0.150 0.850 4 O -0.223 6.223 5 C 0.103 3.897 6 C -0.206 4.206 7 C -0.048 4.048 8 C -0.251 4.251 9 C 0.259 3.741 10 O -0.394 6.394 11 C -0.024 4.024 12 C -0.247 4.247 13 C 0.288 3.712 14 O -0.445 6.445 15 N -0.347 5.347 16 C 0.146 3.854 17 H 0.063 0.937 18 C -0.596 4.596 19 H 0.117 0.883 20 C -0.192 4.192 21 N -0.510 5.510 22 Si 0.807 3.193 23 H -0.185 1.185 24 H -0.215 1.215 25 H -0.188 1.188 26 C 0.356 3.644 27 F -0.182 7.182 28 F -0.204 7.204 29 F -0.132 7.132 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.201 0.799 37 H 0.181 0.819 38 H 0.257 0.743 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.637 11.594 -15.003 20.088 hybrid contribution 0.240 -0.253 1.254 1.302 sum -6.397 11.341 -13.748 18.936 Atomic orbital electron populations 1.22381 0.89532 1.04441 1.06298 1.22388 0.97718 0.97149 0.81273 0.85040 1.86157 1.80616 1.38745 1.16764 1.19763 0.92734 0.91410 0.85764 1.20418 1.05952 1.02223 0.91980 1.21184 0.93531 0.93584 0.96497 1.21170 1.08903 0.96269 0.98774 1.24608 0.72188 0.93704 0.83603 1.90536 1.36272 1.75331 1.37238 1.21511 0.90883 1.00783 0.89209 1.21533 1.07870 0.93052 1.02288 1.20976 0.79990 0.84743 0.85455 1.90732 1.38729 1.27935 1.87073 1.45744 1.52786 1.32332 1.03835 1.19345 0.86860 0.93855 0.85314 0.93676 1.21201 1.10968 1.34483 0.92917 0.88250 1.26032 0.96755 0.94276 1.02141 1.70533 1.25392 1.29932 1.25157 0.85197 0.78529 0.78849 0.76689 1.18541 1.21465 1.18775 1.23357 0.91445 0.75109 0.74525 1.92990 1.97036 1.33594 1.94587 1.93067 1.74904 1.94056 1.58343 1.93382 1.90313 1.79807 1.49679 0.87582 0.87901 0.92214 0.85606 0.84823 0.82642 0.79873 0.81916 0.74322 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.06 71.98 0.65 -2.28 16 2 C 0.07 1.84 2.64 29.85 0.08 1.91 16 3 H 0.13 2.38 6.30 -2.39 -0.02 2.36 16 4 O -0.31 -9.20 9.32 -70.77 -0.66 -9.86 16 5 C 0.15 3.50 6.61 22.68 0.15 3.65 16 6 C -0.19 -4.43 9.95 22.21 0.22 -4.21 16 7 C -0.03 -0.61 9.57 22.44 0.21 -0.39 16 8 C -0.25 -3.79 5.87 -20.15 -0.12 -3.91 16 9 C 0.40 5.08 11.44 70.08 0.80 5.88 16 10 O -0.52 -11.70 17.16 -3.10 -0.05 -11.75 16 11 C -0.01 -0.06 9.77 22.44 0.22 0.16 16 12 C -0.23 -3.43 8.19 22.21 0.18 -3.25 16 13 C 0.50 18.67 6.77 87.66 0.59 19.26 16 14 O -0.57 -27.53 15.07 16.00 0.24 -27.29 16 15 N -0.69 -25.45 4.88 -446.09 -2.18 -27.63 16 16 C 0.25 12.12 2.21 44.25 0.10 12.22 16 17 H 0.05 2.55 7.58 -2.39 -0.02 2.53 16 18 C -0.56 -26.55 8.46 25.60 0.22 -26.34 16 19 H 0.10 4.18 7.74 -2.91 -0.02 4.16 16 20 C 0.01 0.66 5.20 84.65 0.44 1.10 16 21 N -0.88 -47.55 9.50 21.45 0.20 -47.35 16 22 Si 0.98 38.71 29.54 68.60 2.03 40.74 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.29 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 26 C 0.41 20.73 2.81 71.98 0.20 20.93 16 27 F -0.20 -9.31 16.94 44.97 0.76 -8.55 16 28 F -0.22 -11.33 15.68 44.97 0.70 -10.62 16 29 F -0.15 -8.36 12.91 44.97 0.58 -7.78 16 30 H 0.11 1.39 7.56 -2.39 -0.02 1.37 16 31 H 0.10 1.20 6.89 -2.39 -0.02 1.18 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.13 2.71 7.64 -2.91 -0.02 2.69 16 35 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 36 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 37 H 0.16 1.56 5.40 -2.91 -0.02 1.54 16 38 H 0.42 11.75 7.96 -92.71 -0.74 11.01 16 39 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -75.63 348.54 5.98 -69.65 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.39 Total: 15.71 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 3.95 Total: 24.73 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.97 Total: -74.98 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.47 Total: -48.90 kcal Atomic # 9 Polarization: -29.00 SS G_CDS: 2.05 Total: -26.95 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -75.63 5.98 -69.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.843 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds