Wall clock time and date at job start Wed Apr 1 2020 03:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.46904 * 2 1 4 4 C 1.34694 * 117.00167 * 180.02562 * 3 2 1 5 5 O 1.21442 * 119.99970 * 359.97438 * 4 3 2 6 6 C 1.47922 * 119.99998 * 179.97438 * 4 3 2 7 7 C 1.39608 * 120.00884 * 0.27445 * 6 4 3 8 8 C 1.37808 * 119.99696 * 180.21094 * 7 6 4 9 9 C 1.39556 * 120.00467 * 359.50803 * 8 7 6 10 10 C 1.48049 * 119.99456 * 180.27748 * 9 8 7 11 11 O 1.21523 * 119.99984 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99747 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99563 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47042 * 34.99670 * 13 12 10 15 15 C 1.50701 * 109.46939 * 154.99735 * 13 12 10 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 13 12 17 17 C 1.37869 * 120.00032 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99794 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00160 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47452 * 60.00032 * 19 17 15 21 21 H 1.48497 * 109.47150 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46758 * 299.99690 * 19 17 15 23 23 C 1.53003 * 109.46566 * 274.99457 * 13 12 10 24 24 F 1.39895 * 109.47064 * 60.00619 * 23 13 12 25 25 F 1.39901 * 109.46440 * 180.02562 * 23 13 12 26 26 F 1.39897 * 109.47330 * 300.00089 * 23 13 12 27 27 C 1.39554 * 120.01062 * 0.26477 * 9 8 7 28 28 C 1.37810 * 120.00864 * 359.96568 * 27 9 8 29 29 H 1.09000 * 109.47551 * 60.00472 * 1 2 3 30 30 H 1.09009 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47355 * 299.99705 * 1 2 3 32 32 H 1.09000 * 109.47355 * 240.00295 * 2 1 3 33 33 H 1.09000 * 109.47551 * 119.99528 * 2 1 3 34 34 H 1.07998 * 119.99774 * 0.02562 * 7 6 4 35 35 H 1.08002 * 120.00047 * 179.79412 * 8 7 6 36 36 H 0.97000 * 120.00335 * 359.97438 * 12 10 9 37 37 H 0.97009 * 119.99798 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.99707 * 179.97438 * 27 9 8 39 39 H 1.08001 * 120.00857 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3492 1.5455 -0.0005 5 8 4.0890 0.5825 -0.0005 6 6 3.9145 2.9125 -0.0011 7 6 3.0642 4.0197 0.0046 8 6 3.5911 5.2931 -0.0003 9 6 4.9746 5.4759 -0.0007 10 6 5.5404 6.8440 0.0001 11 8 4.8001 7.8077 0.0017 12 7 6.8766 7.0206 -0.0008 13 6 7.4364 8.3745 0.0006 14 1 6.7978 9.0310 0.5915 15 6 8.8189 8.3457 0.5999 16 1 9.2382 7.4124 0.9455 17 6 9.5482 9.5108 0.7070 18 7 9.0376 10.6472 0.2856 19 14 11.2620 9.4751 1.4491 20 1 12.1316 8.5803 0.6440 21 1 11.8295 10.8473 1.4507 22 1 11.1872 8.9693 2.8434 23 6 7.5139 8.8957 -1.4358 24 9 6.2306 8.9224 -1.9920 25 9 8.0491 10.1883 -1.4344 26 9 8.3335 8.0529 -2.1941 27 6 5.8249 4.3693 -0.0017 28 6 5.2985 3.0956 -0.0016 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.9935 3.8782 0.0100 35 1 2.9333 6.1497 0.0008 36 1 7.4675 6.2514 -0.0017 37 1 9.5506 11.4671 0.3612 38 1 6.8955 4.5110 -0.0025 39 1 5.9565 2.2392 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:16 Heat of formation + Delta-G solvation = -233.977732 kcal Electronic energy + Delta-G solvation = -29905.790415 eV Core-core repulsion = 24978.293397 eV Total energy + Delta-G solvation = -4927.497018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.40847 -46.06393 -45.66860 -40.85427 -39.77226 -38.06859 -36.79990 -34.84624 -32.88943 -32.33438 -31.38690 -31.14656 -28.48571 -25.51268 -24.61040 -23.50090 -22.70658 -21.99753 -21.10928 -20.03598 -18.52795 -18.08412 -17.18472 -16.92949 -16.85608 -16.73425 -16.64182 -15.88645 -15.35660 -14.95337 -14.69134 -14.55697 -14.51235 -14.22421 -13.83419 -13.74017 -13.27733 -13.11933 -12.98839 -12.70679 -12.63566 -12.48590 -12.43224 -12.33220 -12.22020 -12.05026 -11.98503 -11.87238 -11.28400 -11.22160 -10.91883 -10.88397 -10.88175 -10.80633 -10.47138 -9.75892 -9.51913 -9.24515 -9.20404 -8.78559 -8.39681 -6.29351 -4.54338 0.23126 1.16681 2.12775 2.29737 3.12460 3.17053 3.21891 3.23125 3.56975 3.85881 4.15949 4.31524 4.50100 4.54938 4.59459 4.60417 4.72880 4.87362 4.87832 4.91796 5.12299 5.15651 5.31423 5.38394 5.49609 5.58139 5.75643 5.79855 5.80881 5.95120 6.02087 6.12406 6.14971 6.22652 6.55714 6.83215 7.01145 7.37499 7.45375 7.56343 8.14397 8.41250 8.67648 9.13724 10.62065 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.002423 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.689487 B =11553.048748 C =12196.002458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.506 6.506 6 C -0.115 4.115 7 C -0.070 4.070 8 C -0.077 4.077 9 C -0.083 4.083 10 C 0.543 3.457 11 O -0.524 6.524 12 N -0.702 5.702 13 C 0.245 3.755 14 H 0.088 0.912 15 C -0.554 4.554 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.838 5.838 19 Si 0.916 3.084 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.417 3.583 24 F -0.217 7.217 25 F -0.135 7.135 26 F -0.209 7.209 27 C -0.099 4.099 28 C -0.061 4.061 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.399 0.601 37 H 0.270 0.730 38 H 0.141 0.859 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 -16.337 -0.064 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.357 3.643 5 O -0.395 6.395 6 C -0.117 4.117 7 C -0.088 4.088 8 C -0.096 4.096 9 C -0.086 4.086 10 C 0.328 3.672 11 O -0.401 6.401 12 N -0.352 5.352 13 C 0.139 3.861 14 H 0.105 0.895 15 C -0.591 4.591 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.471 5.471 19 Si 0.743 3.257 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.361 3.639 24 F -0.199 7.199 25 F -0.117 7.117 26 F -0.190 7.190 27 C -0.118 4.118 28 C -0.079 4.079 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.234 0.766 37 H 0.080 0.920 38 H 0.159 0.841 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.801 -15.688 -0.113 19.632 hybrid contribution 1.265 -0.424 -0.027 1.334 sum -10.536 -16.112 -0.141 19.252 Atomic orbital electron populations 1.21818 0.92420 1.03071 1.03721 1.23063 0.95461 0.79829 1.02762 1.86544 1.23735 1.32581 1.84145 1.21238 0.80614 0.89854 0.72606 1.90827 1.60412 1.42438 1.45801 1.19219 0.94155 0.89901 1.08382 1.21418 1.00406 0.91097 0.95873 1.21318 0.94181 0.97621 0.96481 1.20505 0.94617 0.93824 0.99638 1.18313 0.83127 0.88174 0.77587 1.90782 1.59045 1.41312 1.49004 1.46048 1.05670 1.10523 1.72961 1.19796 0.97933 0.80325 0.88016 0.89456 1.20815 0.98366 0.95790 1.44153 0.90408 1.25083 0.99564 0.95118 0.94616 1.70390 1.37768 0.99029 1.39945 0.86249 0.82306 0.77575 0.79610 1.19768 1.20838 1.19737 1.23109 0.71745 0.77723 0.91351 1.93071 1.41830 1.96619 1.88416 1.93412 1.85024 1.37095 1.96120 1.92993 1.74078 1.72501 1.79476 1.21376 1.00493 0.91269 0.98650 1.21176 0.93229 0.97877 0.95588 0.91327 0.90141 0.91334 0.91075 0.91073 0.83913 0.83538 0.76554 0.91958 0.84149 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.35 -3.56 9.46 -40.48 -0.38 -3.94 16 4 C 0.51 6.05 7.90 34.70 0.27 6.33 16 5 O -0.51 -6.99 16.12 -19.22 -0.31 -7.30 16 6 C -0.12 -1.33 5.88 -104.91 -0.62 -1.95 16 7 C -0.07 -0.76 9.60 -39.23 -0.38 -1.14 16 8 C -0.08 -1.00 9.58 -39.25 -0.38 -1.37 16 9 C -0.08 -1.21 5.88 -104.89 -0.62 -1.83 16 10 C 0.54 10.33 7.31 -12.23 -0.09 10.25 16 11 O -0.52 -11.76 14.91 5.35 0.08 -11.68 16 12 N -0.70 -13.78 4.94 -55.81 -0.28 -14.06 16 13 C 0.24 5.88 2.21 -69.08 -0.15 5.73 16 14 H 0.09 2.34 7.58 -51.93 -0.39 1.95 16 15 C -0.55 -13.68 8.46 -34.44 -0.29 -13.97 16 16 H 0.08 1.79 7.74 -52.49 -0.41 1.39 16 17 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 18 N -0.84 -22.48 9.50 55.43 0.53 -21.95 16 19 Si 0.92 19.64 29.54 -169.99 -5.02 14.61 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 23 C 0.42 10.45 2.81 37.16 0.10 10.55 16 24 F -0.22 -5.41 15.67 2.25 0.04 -5.37 16 25 F -0.14 -3.67 12.91 2.25 0.03 -3.64 16 26 F -0.21 -5.03 16.94 2.25 0.04 -4.99 16 27 C -0.10 -1.22 9.53 -39.25 -0.37 -1.59 16 28 C -0.06 -0.69 9.58 -39.23 -0.38 -1.07 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.14 1.23 7.60 -52.49 -0.40 0.83 16 35 H 0.15 1.87 7.64 -52.49 -0.40 1.47 16 36 H 0.40 6.63 6.56 -40.82 -0.27 6.36 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.14 1.49 6.39 -52.49 -0.34 1.15 16 39 H 0.14 1.46 7.64 -52.49 -0.40 1.06 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -30.75 351.87 -6.20 -36.95 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.85 Total: 4.27 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: -2.37 Total: 11.81 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.25 Total: -36.01 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.61 Total: -22.93 kcal Atomic # 9 Polarization: -14.11 SS G_CDS: 0.10 Total: -14.01 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.75 -6.20 -36.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.028 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds