Wall clock time and date at job start Wed Apr 1 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.74030 * 2 1 4 4 O 1.43171 * 109.75603 * 239.41879 * 2 1 3 5 5 C 1.36107 * 116.72472 * 194.11267 * 4 2 1 6 6 C 1.38703 * 119.38873 * 197.15131 * 5 4 2 7 7 C 1.38196 * 120.06540 * 180.13420 * 6 5 4 8 8 C 1.38246 * 120.11302 * 0.03241 * 7 6 5 9 9 C 1.38197 * 120.11451 * 359.94580 * 8 7 6 10 10 C 1.38703 * 120.06866 * 359.96898 * 9 8 7 11 11 O 1.36107 * 119.40050 * 180.19989 * 10 9 8 12 12 C 1.43170 * 116.71976 * 197.05840 * 11 10 9 13 13 H 1.08999 * 109.70723 * 73.59754 * 12 11 10 14 14 C 1.50701 * 109.70746 * 194.18029 * 12 11 10 15 15 O 1.21278 * 120.00030 * 12.22842 * 14 12 11 16 16 N 1.34780 * 119.99439 * 192.23097 * 14 12 11 17 17 C 1.46507 * 119.99339 * 175.17527 * 16 14 12 18 18 H 1.08996 * 109.47398 * 325.00492 * 17 16 14 19 19 C 1.50696 * 109.46985 * 204.99903 * 17 16 14 20 20 H 1.08007 * 120.00138 * 0.02562 * 19 17 16 21 21 C 1.37880 * 119.99899 * 179.97438 * 19 17 16 22 22 N 1.31507 * 119.99935 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99918 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46994 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46893 * 120.00286 * 23 21 19 26 26 H 1.48505 * 109.47076 * 240.00595 * 23 21 19 27 27 C 1.52999 * 109.46507 * 85.00365 * 17 16 14 28 28 F 1.39903 * 109.47216 * 60.00048 * 27 17 16 29 29 F 1.39904 * 109.46956 * 179.97438 * 27 17 16 30 30 F 1.39896 * 109.47647 * 299.99534 * 27 17 16 31 31 H 1.08996 * 109.47598 * 306.27360 * 1 2 3 32 32 H 1.09003 * 109.46777 * 66.27388 * 1 2 3 33 33 H 1.09002 * 109.47361 * 186.26671 * 1 2 3 34 34 H 1.07996 * 119.96701 * 0.16255 * 6 5 4 35 35 H 1.08000 * 119.94154 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.94517 * 179.97438 * 8 7 6 37 37 H 1.08007 * 119.96484 * 180.02562 * 9 8 7 38 38 H 0.96994 * 120.00258 * 355.18668 * 16 14 12 39 39 H 0.97002 * 119.99776 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0139 -0.6855 -1.1600 5 6 3.3304 -1.0310 -1.1621 6 6 3.9452 -1.3628 -2.3603 7 6 5.2805 -1.7184 -2.3782 8 6 6.0069 -1.7452 -1.2023 9 6 5.4006 -1.4153 -0.0050 10 6 4.0612 -1.0558 0.0198 11 8 3.4788 -0.7296 1.2059 12 6 2.0476 -0.7357 1.2435 13 1 1.6842 -1.7633 1.2404 14 6 1.5688 -0.0312 2.4867 15 8 2.3456 0.6217 3.1509 16 7 0.2774 -0.1269 2.8604 17 6 -0.1656 0.4689 4.1235 18 1 0.6273 0.3781 4.8659 19 6 -1.3967 -0.2492 4.6130 20 1 -1.8079 -1.0678 4.0407 21 6 -1.9977 0.1381 5.7919 22 7 -1.4968 1.1345 6.4889 23 14 -3.5234 -0.7525 6.3991 24 1 -3.8829 -1.8283 5.4407 25 1 -3.2514 -1.3480 7.7319 26 1 -4.6486 0.2107 6.5074 27 6 -0.4913 1.9475 3.9032 28 9 -1.5090 2.0639 2.9503 29 9 -0.9149 2.5163 5.1092 30 9 0.6516 2.6142 3.4488 31 1 -0.3634 0.6080 0.8284 32 1 -0.3633 0.4135 -0.9408 33 1 -0.3634 -1.0215 0.1122 34 1 3.3799 -1.3427 -3.2803 35 1 5.7573 -1.9759 -3.3124 36 1 7.0502 -2.0239 -1.2193 37 1 5.9705 -1.4367 0.9122 38 1 -0.3585 -0.5902 2.2933 39 1 -1.9199 1.4072 7.3181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928809006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:18 Heat of formation + Delta-G solvation = -209.476201 kcal Electronic energy + Delta-G solvation = -31715.693166 eV Core-core repulsion = 26789.258614 eV Total energy + Delta-G solvation = -4926.434552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.45934 -46.11281 -45.71418 -41.56285 -39.26432 -37.73437 -37.25107 -34.89791 -33.42432 -32.36014 -30.83198 -29.25632 -28.74309 -27.09851 -24.69196 -23.80705 -22.87353 -22.14194 -20.78583 -20.12663 -18.95951 -18.20355 -17.49224 -17.01697 -16.79390 -16.74444 -16.28170 -15.78866 -15.63954 -15.13131 -14.94677 -14.76483 -14.66652 -14.30180 -13.94601 -13.57904 -13.47672 -13.18374 -13.03417 -12.77682 -12.61231 -12.51102 -12.43705 -12.34870 -12.10185 -12.01590 -11.97176 -11.85652 -11.44127 -11.27681 -11.08554 -10.95522 -10.92871 -10.51242 -10.48018 -9.77433 -9.43053 -8.84121 -8.77920 -8.47673 -8.17254 -6.33705 -4.58912 1.15991 1.18216 2.56791 2.78466 2.95684 3.12257 3.20011 3.23089 3.57706 3.77853 4.06961 4.12481 4.42177 4.47802 4.61362 4.70862 4.83385 4.85257 4.91550 5.10791 5.15842 5.22588 5.28121 5.48976 5.59218 5.69791 5.74598 5.76995 5.95404 6.00441 6.07517 6.08579 6.31386 6.48970 6.72501 6.81124 6.93892 7.29751 7.32935 7.52057 8.03204 8.36406 8.58038 9.09584 10.57900 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.003151 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.384665 B = 8884.229727 C = 8977.701557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.064 3.936 3 H 0.092 0.908 4 O -0.301 6.301 5 C 0.049 3.951 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.056 3.944 11 O -0.278 6.278 12 C 0.039 3.961 13 H 0.108 0.892 14 C 0.517 3.483 15 O -0.502 6.502 16 N -0.706 5.706 17 C 0.246 3.754 18 H 0.087 0.913 19 C -0.555 4.555 20 H 0.080 0.920 21 C 0.066 3.934 22 N -0.837 5.837 23 Si 0.917 3.083 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.416 3.584 28 F -0.209 7.209 29 F -0.135 7.135 30 F -0.216 7.216 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.401 0.599 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 -5.500 -14.543 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.007 3.993 3 H 0.110 0.890 4 O -0.215 6.215 5 C 0.004 3.996 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.010 3.990 11 O -0.191 6.191 12 C -0.021 4.021 13 H 0.125 0.875 14 C 0.299 3.701 15 O -0.375 6.375 16 N -0.359 5.359 17 C 0.141 3.859 18 H 0.105 0.895 19 C -0.592 4.592 20 H 0.098 0.902 21 C -0.143 4.143 22 N -0.470 5.470 23 Si 0.743 3.257 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.205 1.205 27 C 0.360 3.640 28 F -0.191 7.191 29 F -0.116 7.116 30 F -0.198 7.198 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.237 0.763 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.319 -4.850 -13.796 16.353 hybrid contribution -1.220 -0.252 0.118 1.252 sum 6.098 -5.102 -13.678 15.821 Atomic orbital electron populations 1.22082 0.90063 1.04378 1.05205 1.23040 0.97418 0.95889 0.82996 0.88977 1.86322 1.21406 1.73173 1.40642 1.18991 0.84515 1.02606 0.93526 1.20427 0.94740 1.02673 0.95486 1.20890 0.93183 1.01254 0.98578 1.20902 1.00123 1.00962 0.91554 1.20486 0.91891 1.01111 0.99624 1.19082 0.94026 1.01821 0.84073 1.86412 1.18879 1.84628 1.29162 1.23094 0.81234 1.01737 0.96072 0.87464 1.19541 0.83478 0.81760 0.85307 1.90770 1.54245 1.38814 1.53658 1.46205 1.08069 1.57258 1.24406 1.19829 0.99310 0.84667 0.82079 0.89548 1.20887 1.10905 1.19068 1.08298 0.90224 1.25085 0.98385 0.94608 0.96267 1.70399 1.39388 1.23404 1.13824 0.86131 0.81322 0.79414 0.78827 1.19332 1.20497 1.20488 1.23108 0.72962 0.93628 0.74283 1.92988 1.62426 1.97109 1.66547 1.93415 1.89371 1.86764 1.42057 1.93086 1.52480 1.84282 1.89941 0.88492 0.89907 0.90615 0.84872 0.85192 0.85109 0.84614 0.76253 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.19 37.16 0.30 -1.59 16 2 C 0.06 0.89 3.16 -26.49 -0.08 0.81 16 3 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 4 O -0.30 -4.16 10.07 -32.86 -0.33 -4.49 16 5 C 0.05 0.67 6.49 -39.14 -0.25 0.41 16 6 C -0.11 -1.26 9.96 -39.42 -0.39 -1.66 16 7 C -0.12 -1.12 10.04 -39.59 -0.40 -1.52 16 8 C -0.12 -1.14 10.04 -39.59 -0.40 -1.53 16 9 C -0.11 -1.38 9.96 -39.42 -0.39 -1.78 16 10 C 0.06 0.82 6.49 -39.14 -0.25 0.57 16 11 O -0.28 -4.79 9.64 -46.91 -0.45 -5.24 16 12 C 0.04 0.62 3.01 -27.64 -0.08 0.54 16 13 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.52 10.01 6.47 -10.98 -0.07 9.94 16 15 O -0.50 -11.84 14.93 -13.88 -0.21 -12.05 16 16 N -0.71 -13.47 3.91 -54.93 -0.21 -13.69 16 17 C 0.25 5.80 2.20 -69.08 -0.15 5.65 16 18 H 0.09 2.30 7.65 -51.93 -0.40 1.90 16 19 C -0.55 -13.42 8.46 -34.44 -0.29 -13.71 16 20 H 0.08 1.80 7.74 -52.48 -0.41 1.40 16 21 C 0.07 1.64 5.20 -17.82 -0.09 1.55 16 22 N -0.84 -22.19 9.50 55.43 0.53 -21.66 16 23 Si 0.92 19.35 29.54 -169.99 -5.02 14.33 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 C 0.42 10.20 2.81 37.16 0.10 10.30 16 28 F -0.21 -4.81 16.94 2.25 0.04 -4.77 16 29 F -0.13 -3.62 12.91 2.25 0.03 -3.59 16 30 F -0.22 -5.30 15.49 2.25 0.03 -5.27 16 31 H 0.10 1.31 6.11 -51.93 -0.32 0.99 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.40 6.42 6.44 -40.82 -0.26 6.15 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -30.22 337.65 -6.86 -37.07 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.89 Total: 6.27 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -2.45 Total: 7.99 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.31 Total: -35.35 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.99 Total: -21.78 kcal Atomic # 9 Polarization: -13.73 SS G_CDS: 0.10 Total: -13.63 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.22 -6.86 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928809006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.404 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds