Wall clock time and date at job start Wed Apr 1 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.74030 * 2 1 4 4 O 1.43171 * 109.75603 * 239.41879 * 2 1 3 5 5 C 1.36107 * 116.72472 * 194.11267 * 4 2 1 6 6 C 1.38703 * 119.38873 * 197.15131 * 5 4 2 7 7 C 1.38196 * 120.06540 * 180.13420 * 6 5 4 8 8 C 1.38246 * 120.11302 * 0.03241 * 7 6 5 9 9 C 1.38197 * 120.11451 * 359.94580 * 8 7 6 10 10 C 1.38703 * 120.06866 * 359.96898 * 9 8 7 11 11 O 1.36107 * 119.40050 * 180.19989 * 10 9 8 12 12 C 1.43170 * 116.71976 * 197.05840 * 11 10 9 13 13 H 1.08999 * 109.70723 * 73.59754 * 12 11 10 14 14 C 1.50701 * 109.70746 * 194.18029 * 12 11 10 15 15 O 1.21278 * 120.00030 * 12.22842 * 14 12 11 16 16 N 1.34780 * 119.99439 * 192.23097 * 14 12 11 17 17 C 1.46507 * 119.99339 * 175.17527 * 16 14 12 18 18 H 1.08996 * 109.47398 * 325.00492 * 17 16 14 19 19 C 1.50696 * 109.46985 * 204.99903 * 17 16 14 20 20 H 1.08007 * 120.00138 * 0.02562 * 19 17 16 21 21 C 1.37880 * 119.99899 * 179.97438 * 19 17 16 22 22 N 1.31507 * 119.99935 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99918 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46994 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46893 * 120.00286 * 23 21 19 26 26 H 1.48505 * 109.47076 * 240.00595 * 23 21 19 27 27 C 1.52999 * 109.46507 * 85.00365 * 17 16 14 28 28 F 1.39903 * 109.47216 * 60.00048 * 27 17 16 29 29 F 1.39904 * 109.46956 * 179.97438 * 27 17 16 30 30 F 1.39896 * 109.47647 * 299.99534 * 27 17 16 31 31 H 1.08996 * 109.47598 * 306.27360 * 1 2 3 32 32 H 1.09003 * 109.46777 * 66.27388 * 1 2 3 33 33 H 1.09002 * 109.47361 * 186.26671 * 1 2 3 34 34 H 1.07996 * 119.96701 * 0.16255 * 6 5 4 35 35 H 1.08000 * 119.94154 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.94517 * 179.97438 * 8 7 6 37 37 H 1.08007 * 119.96484 * 180.02562 * 9 8 7 38 38 H 0.96994 * 120.00258 * 355.18668 * 16 14 12 39 39 H 0.97002 * 119.99776 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0139 -0.6855 -1.1600 5 6 3.3304 -1.0310 -1.1621 6 6 3.9452 -1.3628 -2.3603 7 6 5.2805 -1.7184 -2.3782 8 6 6.0069 -1.7452 -1.2023 9 6 5.4006 -1.4153 -0.0050 10 6 4.0612 -1.0558 0.0198 11 8 3.4788 -0.7296 1.2059 12 6 2.0476 -0.7357 1.2435 13 1 1.6842 -1.7633 1.2404 14 6 1.5688 -0.0312 2.4867 15 8 2.3456 0.6217 3.1509 16 7 0.2774 -0.1269 2.8604 17 6 -0.1656 0.4689 4.1235 18 1 0.6273 0.3781 4.8659 19 6 -1.3967 -0.2492 4.6130 20 1 -1.8079 -1.0678 4.0407 21 6 -1.9977 0.1381 5.7919 22 7 -1.4968 1.1345 6.4889 23 14 -3.5234 -0.7525 6.3991 24 1 -3.8829 -1.8283 5.4407 25 1 -3.2514 -1.3480 7.7319 26 1 -4.6486 0.2107 6.5074 27 6 -0.4913 1.9475 3.9032 28 9 -1.5090 2.0639 2.9503 29 9 -0.9149 2.5163 5.1092 30 9 0.6516 2.6142 3.4488 31 1 -0.3634 0.6080 0.8284 32 1 -0.3633 0.4135 -0.9408 33 1 -0.3634 -1.0215 0.1122 34 1 3.3799 -1.3427 -3.2803 35 1 5.7573 -1.9759 -3.3124 36 1 7.0502 -2.0239 -1.2193 37 1 5.9705 -1.4367 0.9122 38 1 -0.3585 -0.5902 2.2933 39 1 -1.9199 1.4072 7.3181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928809006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:17 Heat of formation + Delta-G solvation = -227.230431 kcal Electronic energy + Delta-G solvation = -31716.463047 eV Core-core repulsion = 26789.258614 eV Total energy + Delta-G solvation = -4927.204433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.45235 -48.08266 -47.75819 -42.67090 -40.73015 -38.71624 -38.39591 -36.66399 -34.91467 -33.83594 -31.75572 -30.53957 -30.04938 -28.38569 -26.62719 -24.85886 -23.94731 -23.61630 -22.18087 -21.56490 -20.06014 -19.68839 -18.94116 -18.85310 -18.68907 -18.31061 -17.62654 -17.29230 -16.92850 -16.72495 -16.28002 -15.97790 -15.66992 -15.53305 -15.13255 -15.03822 -14.98183 -14.85051 -14.61741 -14.48791 -14.34299 -14.26215 -14.07294 -13.97391 -13.60069 -13.39139 -13.11834 -12.94147 -12.82386 -12.76603 -12.67465 -12.37624 -12.21408 -12.08075 -11.63130 -11.57106 -11.00276 -10.72840 -10.24095 -9.67337 -9.14377 -8.23881 -6.55439 0.28153 0.28774 1.17229 1.38174 1.47381 1.49442 1.61607 1.87893 2.33090 2.43320 2.50681 2.72672 2.90268 2.94483 3.33756 3.47050 3.50773 3.73759 3.78524 3.81344 4.04393 4.11971 4.13254 4.26325 4.41192 4.46697 4.57592 4.66934 4.79987 4.88094 5.03710 5.17553 5.19326 5.21999 5.46152 5.50270 5.61066 5.69547 5.80144 6.29304 6.43035 6.51149 7.00708 7.18468 8.69054 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.003151 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.384665 B = 8884.229727 C = 8977.701557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.070 3.930 3 H 0.073 0.927 4 O -0.299 6.299 5 C 0.024 3.976 6 C -0.116 4.116 7 C -0.108 4.108 8 C -0.108 4.108 9 C -0.128 4.128 10 C 0.020 3.980 11 O -0.309 6.309 12 C 0.047 3.953 13 H 0.131 0.869 14 C 0.518 3.482 15 O -0.551 6.551 16 N -0.692 5.692 17 C 0.252 3.748 18 H 0.049 0.951 19 C -0.561 4.561 20 H 0.098 0.902 21 C 0.016 3.984 22 N -0.874 5.874 23 Si 0.984 3.016 24 H -0.252 1.252 25 H -0.280 1.280 26 H -0.282 1.282 27 C 0.414 3.586 28 F -0.199 7.199 29 F -0.150 7.150 30 F -0.219 7.219 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.136 0.864 38 H 0.418 0.582 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -7.577 -17.289 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 H 0.091 0.909 4 O -0.214 6.214 5 C -0.020 4.020 6 C -0.134 4.134 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.146 4.146 10 C -0.024 4.024 11 O -0.224 6.224 12 C -0.013 4.013 13 H 0.149 0.851 14 C 0.302 3.698 15 O -0.428 6.428 16 N -0.347 5.347 17 C 0.146 3.854 18 H 0.066 0.934 19 C -0.597 4.597 20 H 0.116 0.884 21 C -0.190 4.190 22 N -0.508 5.508 23 Si 0.807 3.193 24 H -0.175 1.175 25 H -0.206 1.206 26 H -0.207 1.207 27 C 0.357 3.643 28 F -0.181 7.181 29 F -0.131 7.131 30 F -0.201 7.201 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.154 0.846 38 H 0.258 0.742 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.113 -6.958 -16.596 19.351 hybrid contribution -0.991 0.394 0.870 1.376 sum 6.123 -6.564 -15.726 18.107 Atomic orbital electron populations 1.22068 0.88264 1.05567 1.05387 1.22939 0.98648 0.94688 0.82470 0.90894 1.86309 1.21854 1.73251 1.39949 1.19340 0.84510 1.03968 0.94223 1.20826 0.95702 1.01748 0.95153 1.21398 0.92353 0.98860 0.99952 1.21341 1.01639 0.99050 0.90534 1.20771 0.91224 1.01562 1.01060 1.19465 0.95143 1.04195 0.83638 1.86339 1.19309 1.85619 1.31130 1.23016 0.81394 1.02432 0.94485 0.85148 1.20177 0.82839 0.80867 0.85892 1.90739 1.55459 1.41046 1.55569 1.45985 1.08624 1.56844 1.23235 1.19439 0.98265 0.84549 0.83166 0.93369 1.21247 1.10691 1.19287 1.08497 0.88404 1.25998 1.01309 0.95183 0.96462 1.70532 1.40887 1.25061 1.14285 0.85098 0.77365 0.78439 0.78365 1.17547 1.20554 1.20749 1.23244 0.73038 0.93997 0.73980 1.92993 1.61946 1.97095 1.66021 1.93385 1.89550 1.87062 1.43107 1.93078 1.52725 1.84422 1.89913 0.90358 0.88088 0.88387 0.82824 0.81246 0.81736 0.84649 0.74214 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.19 71.98 0.59 -2.87 16 2 C 0.07 1.95 3.16 30.75 0.10 2.04 16 3 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 4 O -0.30 -7.93 10.07 -82.55 -0.83 -8.76 16 5 C 0.02 0.64 6.49 22.56 0.15 0.78 16 6 C -0.12 -2.22 9.96 22.37 0.22 -2.00 16 7 C -0.11 -1.57 10.04 22.26 0.22 -1.34 16 8 C -0.11 -1.75 10.04 22.26 0.22 -1.53 16 9 C -0.13 -3.05 9.96 22.37 0.22 -2.82 16 10 C 0.02 0.59 6.49 22.56 0.15 0.74 16 11 O -0.31 -11.07 9.64 -69.12 -0.67 -11.74 16 12 C 0.05 1.50 3.01 30.01 0.09 1.59 16 13 H 0.13 3.47 8.14 -2.39 -0.02 3.45 16 14 C 0.52 20.72 6.47 87.66 0.57 21.28 16 15 O -0.55 -27.51 14.93 15.56 0.23 -27.28 16 16 N -0.69 -26.75 3.91 -446.09 -1.74 -28.50 16 17 C 0.25 12.22 2.20 44.24 0.10 12.31 16 18 H 0.05 2.72 7.65 -2.39 -0.02 2.70 16 19 C -0.56 -27.00 8.46 25.60 0.22 -26.78 16 20 H 0.10 4.25 7.74 -2.91 -0.02 4.23 16 21 C 0.02 0.80 5.20 84.66 0.44 1.24 16 22 N -0.87 -47.31 9.50 21.45 0.20 -47.11 16 23 Si 0.98 39.13 29.54 68.60 2.03 41.15 16 24 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 25 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 27 C 0.41 20.80 2.81 71.98 0.20 21.01 16 28 F -0.20 -9.18 16.94 44.97 0.76 -8.42 16 29 F -0.15 -8.29 12.91 44.97 0.58 -7.71 16 30 F -0.22 -11.19 15.49 44.97 0.70 -10.50 16 31 H 0.08 2.06 6.11 -2.39 -0.01 2.04 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.10 1.72 8.00 -2.39 -0.02 1.70 16 34 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.42 13.04 6.44 -92.71 -0.60 12.44 16 39 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -68.28 337.65 5.27 -63.01 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.53 Total: 22.19 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 3.49 Total: 23.66 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.54 Total: -75.60 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.27 Total: -47.78 kcal Atomic # 9 Polarization: -28.66 SS G_CDS: 2.04 Total: -26.62 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.15 kcal Total: -68.28 5.27 -63.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928809006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.225 kcal (2) G-P(sol) polarization free energy of solvation -68.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds