Wall clock time and date at job start Wed Apr 1 2020 04:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34719 * 116.99653 * 2 1 4 4 O 1.21468 * 120.00054 * 0.02562 * 3 2 1 5 5 C 1.47724 * 119.99909 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.14972 * 354.33942 * 5 3 2 7 7 C 1.37925 * 119.84532 * 180.32303 * 6 5 3 8 8 C 1.38387 * 120.15118 * 359.65157 * 7 6 5 9 9 C 1.38349 * 120.30322 * 0.02562 * 8 7 6 10 10 C 1.37970 * 120.14891 * 0.03588 * 9 8 7 11 11 C 1.50700 * 120.07356 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47481 * 259.57553 * 11 10 9 13 13 O 1.21280 * 119.99960 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00205 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99860 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47362 * 324.99863 * 15 14 12 17 17 C 1.50706 * 109.46719 * 204.99986 * 15 14 12 18 18 H 1.07996 * 120.00386 * 359.97438 * 17 15 14 19 19 C 1.37878 * 119.99652 * 179.72415 * 17 15 14 20 20 N 1.31515 * 120.00105 * 0.27836 * 19 17 15 21 21 Si 1.86802 * 119.99728 * 180.27321 * 19 17 15 22 22 H 1.48492 * 109.47317 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46637 * 120.00339 * 21 19 17 24 24 H 1.48497 * 109.47385 * 239.99741 * 21 19 17 25 25 C 1.52998 * 109.47279 * 85.00462 * 15 14 12 26 26 F 1.39904 * 109.47316 * 179.97438 * 25 15 14 27 27 F 1.39904 * 109.46605 * 299.99208 * 25 15 14 28 28 F 1.39898 * 109.47302 * 59.99345 * 25 15 14 29 29 H 1.09004 * 109.47233 * 299.99681 * 1 2 3 30 30 H 1.09000 * 109.47602 * 59.99927 * 1 2 3 31 31 H 1.08998 * 109.46754 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.07386 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.92622 * 179.68469 * 7 6 5 34 34 H 1.07994 * 119.85176 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.92702 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46638 * 139.57609 * 11 10 9 37 37 H 1.08998 * 109.47282 * 19.57859 * 11 10 9 38 38 H 0.97003 * 119.99533 * 0.02562 * 14 12 11 39 39 H 0.96999 * 119.99612 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5387 1.2778 -0.0006 6 6 4.3022 0.1144 0.1180 7 6 5.6791 0.1946 0.1235 8 6 6.3043 1.4235 0.0045 9 6 5.5541 2.5792 -0.1200 10 6 4.1760 2.5136 -0.1256 11 6 3.3605 3.7736 -0.2608 12 6 2.8600 4.1962 1.0963 13 8 3.1385 3.5391 2.0769 14 7 2.1029 5.3043 1.2205 15 6 1.6169 5.7153 2.5399 16 1 1.3947 4.8309 3.1370 17 6 0.3660 6.5406 2.3797 18 1 -0.0273 6.7393 1.3938 19 6 -0.2791 7.0375 3.4924 20 7 0.2001 6.7959 4.6930 21 14 -1.8338 8.0539 3.2943 22 1 -2.1624 8.1800 1.8516 23 1 -2.9559 7.3849 4.0005 24 1 -1.6195 9.4044 3.8735 25 6 2.6909 6.5484 3.2423 26 9 2.2265 6.9414 4.5021 27 9 3.8520 5.7822 3.3910 28 9 2.9761 7.6835 2.4759 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8155 -0.8451 0.2109 33 1 6.2707 -0.7037 0.2202 34 1 7.3827 1.4806 0.0090 35 1 6.0483 3.5350 -0.2128 36 1 2.5119 3.5883 -0.9194 37 1 3.9811 4.5647 -0.6817 38 1 1.8798 5.8296 0.4361 39 1 -0.2536 7.1458 5.4757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:08 Heat of formation + Delta-G solvation = -226.221351 kcal Electronic energy + Delta-G solvation = -31522.462645 eV Core-core repulsion = 26595.301969 eV Total energy + Delta-G solvation = -4927.160676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.29897 -45.95519 -45.56202 -40.73306 -39.15990 -38.28111 -36.34794 -34.55545 -32.73158 -32.41365 -31.55174 -28.99389 -27.81999 -26.85681 -24.50958 -23.91851 -22.33922 -21.41171 -20.70860 -19.65798 -17.92967 -17.46086 -16.90930 -16.77566 -16.59421 -16.41704 -16.19999 -15.88491 -15.54913 -15.29144 -14.82991 -14.66244 -14.07788 -13.91475 -13.45005 -13.36878 -13.05571 -12.92300 -12.85785 -12.50739 -12.36609 -12.31682 -12.20375 -12.14836 -11.92293 -11.81871 -11.77144 -11.72570 -11.20531 -11.09641 -10.82872 -10.74145 -10.67886 -10.35535 -10.06669 -9.58006 -9.22837 -9.05187 -8.74623 -8.67831 -8.13206 -6.18909 -4.41651 0.71936 1.28718 2.61699 2.73178 3.20299 3.27405 3.31443 3.44093 3.65398 4.08349 4.27415 4.61964 4.64635 4.68732 4.83856 4.91208 4.98056 5.11908 5.21872 5.23212 5.34918 5.46956 5.54116 5.57085 5.69076 5.80117 5.90975 5.94432 5.97101 6.18552 6.28640 6.29156 6.35693 6.54519 6.78593 7.03968 7.30993 7.55666 7.69119 7.84129 8.46019 8.57175 9.04707 9.26202 10.73136 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.003975 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.647224 B = 7041.611197 C = 8401.995891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.505 3.495 4 O -0.486 6.486 5 C -0.110 4.110 6 C -0.064 4.064 7 C -0.139 4.139 8 C -0.084 4.084 9 C -0.122 4.122 10 C 0.009 3.991 11 C -0.115 4.115 12 C 0.529 3.471 13 O -0.538 6.538 14 N -0.710 5.710 15 C 0.247 3.753 16 H 0.083 0.917 17 C -0.548 4.548 18 H 0.077 0.923 19 C 0.064 3.936 20 N -0.842 5.842 21 Si 0.914 3.086 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.417 3.583 26 F -0.138 7.138 27 F -0.218 7.218 28 F -0.210 7.210 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.397 0.603 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.881 -11.545 -11.955 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.349 3.651 4 O -0.374 6.374 5 C -0.111 4.111 6 C -0.082 4.082 7 C -0.157 4.157 8 C -0.102 4.102 9 C -0.140 4.140 10 C 0.008 3.992 11 C -0.154 4.154 12 C 0.314 3.686 13 O -0.415 6.415 14 N -0.359 5.359 15 C 0.142 3.858 16 H 0.100 0.900 17 C -0.585 4.585 18 H 0.096 0.904 19 C -0.145 4.145 20 N -0.475 5.475 21 Si 0.741 3.259 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.360 3.640 26 F -0.119 7.119 27 F -0.200 7.200 28 F -0.192 7.192 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.231 0.769 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.816 -11.673 -10.992 17.423 hybrid contribution -0.870 1.054 -0.130 1.373 sum 5.946 -10.619 -11.123 16.487 Atomic orbital electron populations 1.23261 0.75957 1.03426 1.02980 1.86497 1.23588 1.32875 1.84720 1.21193 0.89118 0.81544 0.73214 1.90863 1.66719 1.35337 1.44462 1.18864 0.89022 0.94512 1.08704 1.21380 0.93964 0.97608 0.95228 1.21092 0.94275 0.98091 1.02225 1.21359 1.00177 0.92385 0.96244 1.21009 0.92452 0.99159 1.01357 1.19440 0.93619 0.92650 0.93516 1.20930 1.01108 0.95162 0.98234 1.19963 0.78143 0.80677 0.89802 1.90681 1.57568 1.53547 1.39706 1.45940 1.52288 1.26722 1.10999 1.19649 0.89506 0.95704 0.80986 0.89990 1.20933 1.07940 1.35120 0.94473 0.90444 1.25091 0.98276 0.96165 0.94935 1.70416 1.36672 1.42400 0.98022 0.86171 0.81701 0.79467 0.78558 1.19398 1.20625 1.20595 1.23172 0.81800 0.79198 0.79784 1.93399 1.86372 1.91163 1.40940 1.93065 1.54653 1.76144 1.96132 1.92980 1.94450 1.55161 1.76605 0.91486 0.91867 0.88250 0.84651 0.85336 0.85399 0.85029 0.86282 0.88671 0.76936 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -4.91 9.83 -40.54 -0.40 -5.31 16 3 C 0.50 8.13 7.82 34.61 0.27 8.40 16 4 O -0.49 -9.01 12.02 -19.25 -0.23 -9.24 16 5 C -0.11 -1.64 5.74 -104.98 -0.60 -2.24 16 6 C -0.06 -0.76 9.62 -39.17 -0.38 -1.14 16 7 C -0.14 -1.42 10.03 -39.64 -0.40 -1.81 16 8 C -0.08 -0.87 10.04 -39.49 -0.40 -1.27 16 9 C -0.12 -1.52 9.66 -39.64 -0.38 -1.90 16 10 C 0.01 0.13 4.47 -104.21 -0.47 -0.34 16 11 C -0.11 -1.79 5.12 -29.04 -0.15 -1.94 16 12 C 0.53 11.05 5.78 -10.99 -0.06 10.99 16 13 O -0.54 -13.26 14.51 5.56 0.08 -13.18 16 14 N -0.71 -15.42 4.98 -54.94 -0.27 -15.69 16 15 C 0.25 6.42 2.21 -69.08 -0.15 6.27 16 16 H 0.08 2.42 7.58 -51.93 -0.39 2.02 16 17 C -0.55 -14.49 8.46 -34.44 -0.29 -14.78 16 18 H 0.08 1.95 7.74 -52.49 -0.41 1.54 16 19 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 20 N -0.84 -23.71 9.51 55.43 0.53 -23.18 16 21 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.42 11.03 2.81 37.16 0.10 11.13 16 26 F -0.14 -3.92 12.93 2.25 0.03 -3.89 16 27 F -0.22 -5.71 15.68 2.25 0.04 -5.67 16 28 F -0.21 -5.29 16.94 2.25 0.04 -5.26 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.14 1.37 7.62 -52.49 -0.40 0.97 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.40 8.03 -52.49 -0.42 0.98 16 36 H 0.12 1.79 6.16 -51.93 -0.32 1.47 16 37 H 0.10 1.18 8.00 -51.93 -0.42 0.77 16 38 H 0.40 7.48 8.54 -40.82 -0.35 7.14 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -33.94 347.29 -5.86 -39.80 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.95 Total: 6.35 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: -1.93 Total: 14.46 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.25 Total: -38.88 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.55 Total: -27.74 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 0.10 Total: -14.82 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.94 -5.86 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.422 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds