Wall clock time and date at job start Wed Apr 1 2020 04:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34719 * 116.99653 * 2 1 4 4 O 1.21468 * 120.00054 * 0.02562 * 3 2 1 5 5 C 1.47724 * 119.99909 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.14972 * 354.33942 * 5 3 2 7 7 C 1.37925 * 119.84532 * 180.32303 * 6 5 3 8 8 C 1.38387 * 120.15118 * 359.65157 * 7 6 5 9 9 C 1.38349 * 120.30322 * 0.02562 * 8 7 6 10 10 C 1.37970 * 120.14891 * 0.03588 * 9 8 7 11 11 C 1.50700 * 120.07356 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47481 * 259.57553 * 11 10 9 13 13 O 1.21280 * 119.99960 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00205 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99860 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47362 * 324.99863 * 15 14 12 17 17 C 1.50706 * 109.46719 * 204.99986 * 15 14 12 18 18 H 1.07996 * 120.00386 * 359.97438 * 17 15 14 19 19 C 1.37878 * 119.99652 * 179.72415 * 17 15 14 20 20 N 1.31515 * 120.00105 * 0.27836 * 19 17 15 21 21 Si 1.86802 * 119.99728 * 180.27321 * 19 17 15 22 22 H 1.48492 * 109.47317 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46637 * 120.00339 * 21 19 17 24 24 H 1.48497 * 109.47385 * 239.99741 * 21 19 17 25 25 C 1.52998 * 109.47279 * 85.00462 * 15 14 12 26 26 F 1.39904 * 109.47316 * 179.97438 * 25 15 14 27 27 F 1.39904 * 109.46605 * 299.99208 * 25 15 14 28 28 F 1.39898 * 109.47302 * 59.99345 * 25 15 14 29 29 H 1.09004 * 109.47233 * 299.99681 * 1 2 3 30 30 H 1.09000 * 109.47602 * 59.99927 * 1 2 3 31 31 H 1.08998 * 109.46754 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.07386 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.92622 * 179.68469 * 7 6 5 34 34 H 1.07994 * 119.85176 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.92702 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46638 * 139.57609 * 11 10 9 37 37 H 1.08998 * 109.47282 * 19.57859 * 11 10 9 38 38 H 0.97003 * 119.99533 * 0.02562 * 14 12 11 39 39 H 0.96999 * 119.99612 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5387 1.2778 -0.0006 6 6 4.3022 0.1144 0.1180 7 6 5.6791 0.1946 0.1235 8 6 6.3043 1.4235 0.0045 9 6 5.5541 2.5792 -0.1200 10 6 4.1760 2.5136 -0.1256 11 6 3.3605 3.7736 -0.2608 12 6 2.8600 4.1962 1.0963 13 8 3.1385 3.5391 2.0769 14 7 2.1029 5.3043 1.2205 15 6 1.6169 5.7153 2.5399 16 1 1.3947 4.8309 3.1370 17 6 0.3660 6.5406 2.3797 18 1 -0.0273 6.7393 1.3938 19 6 -0.2791 7.0375 3.4924 20 7 0.2001 6.7959 4.6930 21 14 -1.8338 8.0539 3.2943 22 1 -2.1624 8.1800 1.8516 23 1 -2.9559 7.3849 4.0005 24 1 -1.6195 9.4044 3.8735 25 6 2.6909 6.5484 3.2423 26 9 2.2265 6.9414 4.5021 27 9 3.8520 5.7822 3.3910 28 9 2.9761 7.6835 2.4759 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8155 -0.8451 0.2109 33 1 6.2707 -0.7037 0.2202 34 1 7.3827 1.4806 0.0090 35 1 6.0483 3.5350 -0.2128 36 1 2.5119 3.5883 -0.9194 37 1 3.9811 4.5647 -0.6817 38 1 1.8798 5.8296 0.4361 39 1 -0.2536 7.1458 5.4757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:07 Heat of formation + Delta-G solvation = -247.865253 kcal Electronic energy + Delta-G solvation = -31523.401195 eV Core-core repulsion = 26595.301969 eV Total energy + Delta-G solvation = -4928.099226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.43987 -48.07104 -47.75034 -41.87894 -40.54403 -39.52063 -37.51899 -36.46298 -34.46790 -33.76992 -32.49147 -30.69085 -28.91226 -28.11281 -26.59861 -24.93397 -23.81032 -22.83628 -21.96580 -21.29087 -19.40337 -18.94999 -18.86204 -18.68113 -18.30179 -17.91741 -17.60919 -17.25001 -16.93695 -16.64187 -16.44631 -15.82266 -15.51369 -15.31815 -14.98595 -14.94120 -14.60357 -14.49017 -14.40932 -14.32884 -14.23832 -14.08090 -13.99167 -13.87255 -13.36729 -13.22032 -13.05365 -12.97236 -12.72702 -12.66714 -12.64666 -12.23342 -12.06121 -11.81468 -11.56950 -11.24539 -10.85536 -10.72173 -10.02609 -9.97019 -9.77100 -8.23603 -6.54283 -0.28168 0.36944 1.43087 1.43648 1.51033 1.57574 1.70761 1.81521 2.23686 2.38822 2.53153 2.86363 2.91864 3.60255 3.68095 3.73557 3.83558 3.91706 4.02127 4.13005 4.25985 4.28841 4.30137 4.34983 4.46679 4.55369 4.63886 4.66517 4.82660 4.91986 5.05047 5.26373 5.32140 5.44235 5.48180 5.52369 5.55587 5.64008 5.93700 6.50897 6.68602 6.76933 7.15232 7.42783 8.69802 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.003975 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.647224 B = 7041.611197 C = 8401.995891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.498 3.502 4 O -0.524 6.524 5 C -0.140 4.140 6 C -0.068 4.068 7 C -0.131 4.131 8 C -0.077 4.077 9 C -0.132 4.132 10 C -0.020 4.020 11 C -0.102 4.102 12 C 0.524 3.476 13 O -0.580 6.580 14 N -0.708 5.708 15 C 0.255 3.745 16 H 0.037 0.963 17 C -0.560 4.560 18 H 0.089 0.911 19 C 0.013 3.987 20 N -0.876 5.876 21 Si 0.985 3.015 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.416 3.584 26 F -0.151 7.151 27 F -0.218 7.218 28 F -0.201 7.201 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.411 0.589 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 -12.179 -13.623 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.345 3.655 4 O -0.415 6.415 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.149 4.149 8 C -0.095 4.095 9 C -0.150 4.150 10 C -0.021 4.021 11 C -0.141 4.141 12 C 0.313 3.687 13 O -0.459 6.459 14 N -0.359 5.359 15 C 0.148 3.852 16 H 0.054 0.946 17 C -0.597 4.597 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.511 5.511 21 Si 0.808 3.192 22 H -0.180 1.180 23 H -0.203 1.203 24 H -0.203 1.203 25 C 0.360 3.640 26 F -0.132 7.132 27 F -0.200 7.200 28 F -0.183 7.183 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.165 0.835 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.247 0.753 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.795 -12.326 -12.708 19.344 hybrid contribution -1.091 1.126 0.400 1.618 sum 6.704 -11.200 -12.308 17.941 Atomic orbital electron populations 1.23522 0.74635 1.05778 1.02176 1.86493 1.24919 1.31799 1.84192 1.21660 0.89956 0.81595 0.72262 1.90826 1.67619 1.36465 1.46541 1.19073 0.88496 0.95839 1.10658 1.21658 0.94957 0.97270 0.94712 1.21563 0.93657 0.99572 1.00067 1.21829 1.01932 0.91621 0.94101 1.21320 0.91622 1.00915 1.01117 1.19560 0.94728 0.92149 0.95670 1.20860 1.01864 0.96865 0.94556 1.20907 0.76889 0.79426 0.91505 1.90643 1.58970 1.54543 1.41782 1.45870 1.52561 1.27528 1.09896 1.19195 0.89836 0.93814 0.82357 0.94570 1.21253 1.08217 1.35091 0.95144 0.89317 1.26034 1.01457 0.97187 0.94481 1.70545 1.38241 1.43410 0.98859 0.85096 0.77428 0.77562 0.79142 1.17992 1.20277 1.20296 1.23203 0.81909 0.79497 0.79407 1.93370 1.86616 1.91329 1.41935 1.93057 1.54621 1.76187 1.96130 1.92982 1.94389 1.54665 1.76262 0.93531 0.91466 0.84290 0.83207 0.81662 0.81837 0.83507 0.86052 0.85420 0.75299 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -9.81 9.83 -56.29 -0.55 -10.37 16 3 C 0.50 16.49 7.82 70.33 0.55 17.04 16 4 O -0.52 -20.26 12.02 19.95 0.24 -20.02 16 5 C -0.14 -4.14 5.74 -20.10 -0.12 -4.25 16 6 C -0.07 -1.52 9.62 22.54 0.22 -1.30 16 7 C -0.13 -2.23 10.03 22.23 0.22 -2.01 16 8 C -0.08 -1.35 10.04 22.33 0.22 -1.12 16 9 C -0.13 -3.03 9.66 22.23 0.21 -2.82 16 10 C -0.02 -0.59 4.47 -19.60 -0.09 -0.68 16 11 C -0.10 -3.17 5.12 29.10 0.15 -3.02 16 12 C 0.52 22.40 5.78 87.65 0.51 22.91 16 13 O -0.58 -29.63 14.51 -3.03 -0.04 -29.68 16 14 N -0.71 -31.36 4.98 -446.11 -2.22 -33.58 16 15 C 0.26 13.68 2.21 44.25 0.10 13.78 16 16 H 0.04 2.28 7.58 -2.39 -0.02 2.26 16 17 C -0.56 -29.97 8.46 25.60 0.22 -29.76 16 18 H 0.09 4.43 7.74 -2.91 -0.02 4.41 16 19 C 0.01 0.72 5.20 84.65 0.44 1.16 16 20 N -0.88 -50.45 9.51 21.45 0.20 -50.24 16 21 Si 0.98 42.13 29.54 68.60 2.03 44.15 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.42 22.50 2.81 71.98 0.20 22.70 16 26 F -0.15 -8.86 12.93 44.97 0.58 -8.27 16 27 F -0.22 -11.66 15.68 44.97 0.71 -10.96 16 28 F -0.20 -10.14 16.94 44.97 0.76 -9.38 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.15 2.77 7.62 -2.91 -0.02 2.75 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.15 2.78 8.03 -2.91 -0.02 2.76 16 36 H 0.12 3.70 6.16 -2.39 -0.01 3.69 16 37 H 0.13 2.99 8.00 -2.39 -0.02 2.98 16 38 H 0.41 15.53 8.54 -92.71 -0.79 14.74 16 39 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -76.49 347.29 6.07 -70.43 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.33 Total: 23.41 kcal Atomic # 6 Polarization: 30.48 SS G_CDS: 4.04 Total: 34.51 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.02 Total: -83.82 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -0.36 Total: -60.07 kcal Atomic # 9 Polarization: -30.66 SS G_CDS: 2.05 Total: -28.61 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -76.49 6.07 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.438 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds