Wall clock time and date at job start Wed Apr 1 2020 04:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34712 * 116.99714 * 2 1 4 4 O 1.21468 * 120.00203 * 0.02562 * 3 2 1 5 5 C 1.47732 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.39641 * 120.14729 * 5.69347 * 5 3 2 7 7 C 1.37930 * 119.84403 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14722 * 359.72319 * 7 6 5 9 9 C 1.38340 * 120.30533 * 0.55152 * 8 7 6 10 10 C 1.37970 * 120.14793 * 359.44646 * 9 8 7 11 11 C 1.50701 * 120.07439 * 180.29641 * 10 9 8 12 12 C 1.50699 * 109.47062 * 100.16881 * 11 10 9 13 13 O 1.21280 * 119.99859 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99915 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99642 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.47846 * 34.99569 * 15 14 12 17 17 C 1.50706 * 109.47143 * 155.00109 * 15 14 12 18 18 H 1.07997 * 119.99263 * 359.97438 * 17 15 14 19 19 C 1.37873 * 120.00062 * 180.02562 * 17 15 14 20 20 N 1.31512 * 119.99993 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00001 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47234 * 89.99286 * 21 19 17 23 23 H 1.48494 * 109.47074 * 209.99734 * 21 19 17 24 24 H 1.48500 * 109.46938 * 329.99615 * 21 19 17 25 25 C 1.53000 * 109.46800 * 274.99574 * 15 14 12 26 26 F 1.39899 * 109.47217 * 60.00604 * 25 15 14 27 27 F 1.39899 * 109.47094 * 180.02562 * 25 15 14 28 28 F 1.39897 * 109.47396 * 300.00082 * 25 15 14 29 29 H 1.09002 * 109.47740 * 59.99991 * 1 2 3 30 30 H 1.09008 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47329 * 299.99720 * 1 2 3 32 32 H 1.07996 * 120.07907 * 359.97438 * 6 5 3 33 33 H 1.07996 * 119.92357 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.84428 * 180.27688 * 8 7 6 35 35 H 1.07996 * 119.92612 * 179.72481 * 9 8 7 36 36 H 1.09001 * 109.47405 * 220.16805 * 11 10 9 37 37 H 1.09009 * 109.47122 * 340.16978 * 11 10 9 38 38 H 0.96998 * 119.99777 * 359.97438 * 14 12 11 39 39 H 0.97000 * 120.00308 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3021 0.1145 -0.1187 7 6 5.6791 0.1939 -0.1169 8 6 6.3042 1.4233 -0.0030 9 6 5.5541 2.5790 0.1211 10 6 4.1759 2.5140 0.1207 11 6 3.3604 3.7747 0.2494 12 6 2.8715 4.1978 -1.1119 13 8 3.1576 3.5406 -2.0902 14 7 2.1172 5.3072 -1.2422 15 6 1.6415 5.7181 -2.5655 16 1 1.4222 4.8337 -3.1636 17 6 0.3910 6.5456 -2.4151 18 1 -0.0095 6.7450 -1.4321 19 6 -0.2423 7.0471 -3.5324 20 7 0.2452 6.8038 -4.7293 21 14 -1.7928 8.0722 -3.3460 22 1 -1.4260 9.5054 -3.2158 23 1 -2.6544 7.8883 -4.5414 24 1 -2.5304 7.6379 -2.1326 25 6 2.7221 6.5488 -3.2605 26 9 3.8830 5.7807 -3.4002 27 9 2.2677 6.9417 -4.5239 28 9 3.0036 7.6840 -2.4929 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8154 -0.8452 -0.2113 33 1 6.2707 -0.7050 -0.2086 34 1 7.3828 1.4802 -0.0067 35 1 6.0484 3.5347 0.2141 36 1 2.5063 3.5901 0.9009 37 1 3.9783 4.5653 0.6754 38 1 1.8887 5.8330 -0.4598 39 1 -0.2001 7.1570 -5.5154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:11 Heat of formation + Delta-G solvation = -225.988794 kcal Electronic energy + Delta-G solvation = -31513.977644 eV Core-core repulsion = 26586.827053 eV Total energy + Delta-G solvation = -4927.150591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.29894 -45.95454 -45.56165 -40.73538 -39.16308 -38.28245 -36.35376 -34.55727 -32.73106 -32.41413 -31.55290 -28.99434 -27.82263 -26.85729 -24.50709 -23.91857 -22.34127 -21.41148 -20.71144 -19.66133 -17.93270 -17.45979 -16.91069 -16.77592 -16.59453 -16.41797 -16.20194 -15.88692 -15.54840 -15.29302 -14.82754 -14.66424 -14.08382 -13.91426 -13.45255 -13.37182 -13.05642 -12.92330 -12.85708 -12.50692 -12.36505 -12.31521 -12.20585 -12.15107 -11.92117 -11.81802 -11.77427 -11.72566 -11.20335 -11.08240 -10.85234 -10.74431 -10.68003 -10.35313 -10.06015 -9.59139 -9.22950 -9.05313 -8.74610 -8.67308 -8.13409 -6.18530 -4.41540 0.71858 1.28761 2.61440 2.72883 3.21463 3.27280 3.30352 3.43719 3.65295 4.08288 4.27475 4.62082 4.64536 4.68711 4.83787 4.91201 4.98074 5.11613 5.21669 5.23203 5.34887 5.46860 5.53908 5.57049 5.69215 5.80117 5.91057 5.94487 5.97129 6.18574 6.28581 6.29203 6.35696 6.54632 6.78623 7.03892 7.30725 7.55475 7.69124 7.83772 8.45788 8.56840 9.04408 9.26170 10.73250 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003969 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.012045 B = 7053.269947 C = 8415.442390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.505 3.495 4 O -0.486 6.486 5 C -0.111 4.111 6 C -0.063 4.063 7 C -0.139 4.139 8 C -0.083 4.083 9 C -0.122 4.122 10 C 0.009 3.991 11 C -0.115 4.115 12 C 0.528 3.472 13 O -0.538 6.538 14 N -0.710 5.710 15 C 0.248 3.752 16 H 0.082 0.918 17 C -0.548 4.548 18 H 0.077 0.923 19 C 0.064 3.936 20 N -0.841 5.841 21 Si 0.914 3.086 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.417 3.583 26 F -0.218 7.218 27 F -0.137 7.137 28 F -0.210 7.210 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.397 0.603 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -11.555 12.005 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.349 3.651 4 O -0.374 6.374 5 C -0.112 4.112 6 C -0.081 4.081 7 C -0.157 4.157 8 C -0.101 4.101 9 C -0.140 4.140 10 C 0.008 3.992 11 C -0.155 4.155 12 C 0.314 3.686 13 O -0.415 6.415 14 N -0.359 5.359 15 C 0.142 3.858 16 H 0.100 0.900 17 C -0.585 4.585 18 H 0.095 0.905 19 C -0.145 4.145 20 N -0.475 5.475 21 Si 0.741 3.259 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.360 3.640 26 F -0.200 7.200 27 F -0.119 7.119 28 F -0.192 7.192 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.113 0.887 38 H 0.231 0.769 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.707 -11.687 11.039 17.419 hybrid contribution -0.862 1.070 0.135 1.380 sum 5.845 -10.617 11.174 16.485 Atomic orbital electron populations 1.23262 0.75954 1.03432 1.02979 1.86495 1.23590 1.32874 1.84708 1.21197 0.89121 0.81541 0.73192 1.90860 1.66731 1.35328 1.44507 1.18863 0.89016 0.94518 1.08772 1.21378 0.93965 0.97611 0.95188 1.21094 0.94273 0.98081 1.02266 1.21361 1.00180 0.92381 0.96205 1.21006 0.92453 0.99168 1.01371 1.19438 0.93619 0.92645 0.93468 1.20945 1.01218 0.95149 0.98195 1.19972 0.78123 0.80693 0.89832 1.90682 1.57228 1.53587 1.40002 1.45942 1.52496 1.26617 1.10894 1.19646 0.89529 0.95727 0.80913 0.89994 1.20891 1.08142 1.35015 0.94475 0.90499 1.25085 0.98237 0.96185 0.94944 1.70407 1.36823 1.42238 0.98026 0.86226 0.81654 0.80078 0.77953 1.20234 1.20849 1.19497 1.23181 0.81928 0.79157 0.79705 1.93064 1.54687 1.76043 1.96204 1.93400 1.86704 1.91160 1.40594 1.92980 1.94523 1.55151 1.76549 0.91485 0.88244 0.91866 0.84650 0.85334 0.85397 0.85031 0.86201 0.88667 0.76932 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -4.90 9.83 -40.53 -0.40 -5.30 16 3 C 0.50 8.12 7.82 34.61 0.27 8.39 16 4 O -0.49 -9.00 12.05 -19.24 -0.23 -9.23 16 5 C -0.11 -1.65 5.76 -104.98 -0.60 -2.25 16 6 C -0.06 -0.76 9.62 -39.17 -0.38 -1.14 16 7 C -0.14 -1.42 10.03 -39.64 -0.40 -1.82 16 8 C -0.08 -0.87 10.04 -39.49 -0.40 -1.27 16 9 C -0.12 -1.53 9.66 -39.64 -0.38 -1.91 16 10 C 0.01 0.14 4.46 -104.21 -0.46 -0.33 16 11 C -0.12 -1.80 5.12 -29.03 -0.15 -1.95 16 12 C 0.53 11.05 5.85 -10.98 -0.06 10.98 16 13 O -0.54 -13.26 14.52 5.56 0.08 -13.18 16 14 N -0.71 -15.42 4.99 -54.93 -0.27 -15.69 16 15 C 0.25 6.43 2.21 -69.08 -0.15 6.28 16 16 H 0.08 2.41 7.58 -51.93 -0.39 2.02 16 17 C -0.55 -14.50 8.46 -34.44 -0.29 -14.79 16 18 H 0.08 1.93 7.74 -52.49 -0.41 1.52 16 19 C 0.06 1.71 5.20 -17.82 -0.09 1.62 16 20 N -0.84 -23.70 9.50 55.43 0.53 -23.18 16 21 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 25 C 0.42 11.02 2.81 37.16 0.10 11.13 16 26 F -0.22 -5.71 15.67 2.25 0.04 -5.67 16 27 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 28 F -0.21 -5.30 16.94 2.25 0.04 -5.26 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.14 1.37 7.62 -52.49 -0.40 0.97 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.13 1.41 8.03 -52.49 -0.42 0.99 16 36 H 0.12 1.81 6.11 -51.93 -0.32 1.49 16 37 H 0.10 1.19 8.00 -51.92 -0.42 0.77 16 38 H 0.40 7.48 8.54 -40.82 -0.35 7.13 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -33.91 347.34 -5.86 -39.77 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.95 Total: 6.39 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -1.93 Total: 14.42 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.25 Total: -38.87 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.55 Total: -27.71 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 0.10 Total: -14.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.91 -5.86 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.215 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds