Wall clock time and date at job start Wed Apr 1 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34712 * 116.99714 * 2 1 4 4 O 1.21468 * 120.00203 * 0.02562 * 3 2 1 5 5 C 1.47732 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.39641 * 120.14729 * 5.69347 * 5 3 2 7 7 C 1.37930 * 119.84403 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14722 * 359.72319 * 7 6 5 9 9 C 1.38340 * 120.30533 * 0.55152 * 8 7 6 10 10 C 1.37970 * 120.14793 * 359.44646 * 9 8 7 11 11 C 1.50701 * 120.07439 * 180.29641 * 10 9 8 12 12 C 1.50699 * 109.47062 * 100.16881 * 11 10 9 13 13 O 1.21280 * 119.99859 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99915 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99642 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.47846 * 34.99569 * 15 14 12 17 17 C 1.50706 * 109.47143 * 155.00109 * 15 14 12 18 18 H 1.07997 * 119.99263 * 359.97438 * 17 15 14 19 19 C 1.37873 * 120.00062 * 180.02562 * 17 15 14 20 20 N 1.31512 * 119.99993 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00001 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47234 * 89.99286 * 21 19 17 23 23 H 1.48494 * 109.47074 * 209.99734 * 21 19 17 24 24 H 1.48500 * 109.46938 * 329.99615 * 21 19 17 25 25 C 1.53000 * 109.46800 * 274.99574 * 15 14 12 26 26 F 1.39899 * 109.47217 * 60.00604 * 25 15 14 27 27 F 1.39899 * 109.47094 * 180.02562 * 25 15 14 28 28 F 1.39897 * 109.47396 * 300.00082 * 25 15 14 29 29 H 1.09002 * 109.47740 * 59.99991 * 1 2 3 30 30 H 1.09008 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47329 * 299.99720 * 1 2 3 32 32 H 1.07996 * 120.07907 * 359.97438 * 6 5 3 33 33 H 1.07996 * 119.92357 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.84428 * 180.27688 * 8 7 6 35 35 H 1.07996 * 119.92612 * 179.72481 * 9 8 7 36 36 H 1.09001 * 109.47405 * 220.16805 * 11 10 9 37 37 H 1.09009 * 109.47122 * 340.16978 * 11 10 9 38 38 H 0.96998 * 119.99777 * 359.97438 * 14 12 11 39 39 H 0.97000 * 120.00308 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3021 0.1145 -0.1187 7 6 5.6791 0.1939 -0.1169 8 6 6.3042 1.4233 -0.0030 9 6 5.5541 2.5790 0.1211 10 6 4.1759 2.5140 0.1207 11 6 3.3604 3.7747 0.2494 12 6 2.8715 4.1978 -1.1119 13 8 3.1576 3.5406 -2.0902 14 7 2.1172 5.3072 -1.2422 15 6 1.6415 5.7181 -2.5655 16 1 1.4222 4.8337 -3.1636 17 6 0.3910 6.5456 -2.4151 18 1 -0.0095 6.7450 -1.4321 19 6 -0.2423 7.0471 -3.5324 20 7 0.2452 6.8038 -4.7293 21 14 -1.7928 8.0722 -3.3460 22 1 -1.4260 9.5054 -3.2158 23 1 -2.6544 7.8883 -4.5414 24 1 -2.5304 7.6379 -2.1326 25 6 2.7221 6.5488 -3.2605 26 9 3.8830 5.7807 -3.4002 27 9 2.2677 6.9417 -4.5239 28 9 3.0036 7.6840 -2.4929 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8154 -0.8452 -0.2113 33 1 6.2707 -0.7050 -0.2086 34 1 7.3828 1.4802 -0.0067 35 1 6.0484 3.5347 0.2141 36 1 2.5063 3.5901 0.9009 37 1 3.9783 4.5653 0.6754 38 1 1.8887 5.8330 -0.4598 39 1 -0.2001 7.1570 -5.5154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:10 Heat of formation + Delta-G solvation = -247.596482 kcal Electronic energy + Delta-G solvation = -31514.914624 eV Core-core repulsion = 26586.827053 eV Total energy + Delta-G solvation = -4928.087571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.44016 -48.07106 -47.74972 -41.88001 -40.54800 -39.52193 -37.52231 -36.46492 -34.46907 -33.76926 -32.49275 -30.69153 -28.91307 -28.11300 -26.59550 -24.93378 -23.81225 -22.83719 -21.96601 -21.29550 -19.40429 -18.95006 -18.86185 -18.68120 -18.30256 -17.91631 -17.61167 -17.25155 -16.93396 -16.64420 -16.44733 -15.82668 -15.51716 -15.31840 -14.98564 -14.94218 -14.60336 -14.48988 -14.41103 -14.32832 -14.24128 -14.07927 -13.99070 -13.86842 -13.36692 -13.22371 -13.05186 -12.96160 -12.74573 -12.66890 -12.63632 -12.23594 -12.06231 -11.81623 -11.58742 -11.23791 -10.85866 -10.71153 -10.02820 -9.97201 -9.77077 -8.23194 -6.54116 -0.28261 0.36908 1.43486 1.44654 1.50931 1.56374 1.70618 1.80995 2.23632 2.38845 2.53234 2.86319 2.91924 3.60204 3.67936 3.73611 3.83576 3.91661 4.02131 4.12973 4.25982 4.28830 4.30168 4.34935 4.46690 4.55339 4.63925 4.66498 4.82603 4.91934 5.04997 5.26355 5.32085 5.43949 5.48143 5.52413 5.55532 5.63879 5.93647 6.50605 6.68427 6.76678 7.15250 7.42419 8.69790 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.003969 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.012045 B = 7053.269947 C = 8415.442390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.499 3.501 4 O -0.524 6.524 5 C -0.140 4.140 6 C -0.068 4.068 7 C -0.131 4.131 8 C -0.077 4.077 9 C -0.132 4.132 10 C -0.020 4.020 11 C -0.103 4.103 12 C 0.524 3.476 13 O -0.580 6.580 14 N -0.708 5.708 15 C 0.256 3.744 16 H 0.037 0.963 17 C -0.561 4.561 18 H 0.089 0.911 19 C 0.014 3.986 20 N -0.876 5.876 21 Si 0.984 3.016 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.259 1.259 25 C 0.416 3.584 26 F -0.218 7.218 27 F -0.151 7.151 28 F -0.201 7.201 29 H 0.046 0.954 30 H 0.139 0.861 31 H 0.067 0.933 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.411 0.589 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -12.191 13.658 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.345 3.655 4 O -0.415 6.415 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.149 4.149 8 C -0.095 4.095 9 C -0.150 4.150 10 C -0.021 4.021 11 C -0.142 4.142 12 C 0.312 3.688 13 O -0.459 6.459 14 N -0.359 5.359 15 C 0.148 3.852 16 H 0.054 0.946 17 C -0.598 4.598 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.510 5.510 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.183 1.183 25 C 0.360 3.640 26 F -0.200 7.200 27 F -0.132 7.132 28 F -0.183 7.183 29 H 0.065 0.935 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.168 0.832 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.247 0.753 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.661 -12.342 12.740 19.321 hybrid contribution -1.075 1.143 -0.388 1.616 sum 6.586 -11.199 12.352 17.927 Atomic orbital electron populations 1.23525 0.74626 1.05787 1.02185 1.86491 1.24927 1.31794 1.84179 1.21660 0.89952 0.81596 0.72247 1.90823 1.67627 1.36453 1.46576 1.19072 0.88501 0.95833 1.10706 1.21659 0.94958 0.97281 0.94673 1.21565 0.93658 0.99557 1.00093 1.21831 1.01934 0.91626 0.94078 1.21316 0.91628 1.00916 1.01138 1.19559 0.94725 0.92149 0.95636 1.20873 1.01989 0.96853 0.94500 1.20915 0.76853 0.79448 0.91550 1.90644 1.58634 1.54584 1.42071 1.45872 1.52774 1.27423 1.09784 1.19194 0.89847 0.93844 0.82296 0.94562 1.21219 1.08418 1.34983 0.95173 0.89327 1.26028 1.01401 0.97228 0.94480 1.70539 1.38377 1.43259 0.98833 0.85146 0.77538 0.78322 0.78238 1.19608 1.20611 1.18298 1.23214 0.82041 0.79451 0.79328 1.93056 1.54657 1.76086 1.96200 1.93371 1.86940 1.91324 1.41586 1.92981 1.94464 1.54664 1.76211 0.93513 0.84286 0.91465 0.83193 0.81657 0.81843 0.83527 0.85986 0.85421 0.75291 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -9.79 9.83 -56.22 -0.55 -10.34 16 3 C 0.50 16.47 7.82 70.33 0.55 17.02 16 4 O -0.52 -20.22 12.05 19.94 0.24 -19.98 16 5 C -0.14 -4.15 5.76 -20.10 -0.12 -4.26 16 6 C -0.07 -1.51 9.62 22.54 0.22 -1.30 16 7 C -0.13 -2.24 10.03 22.23 0.22 -2.01 16 8 C -0.08 -1.35 10.04 22.33 0.22 -1.12 16 9 C -0.13 -3.04 9.66 22.23 0.21 -2.83 16 10 C -0.02 -0.58 4.46 -19.60 -0.09 -0.67 16 11 C -0.10 -3.20 5.12 29.10 0.15 -3.05 16 12 C 0.52 22.39 5.85 87.66 0.51 22.90 16 13 O -0.58 -29.63 14.52 -3.03 -0.04 -29.67 16 14 N -0.71 -31.36 4.99 -446.10 -2.22 -33.58 16 15 C 0.26 13.69 2.21 44.25 0.10 13.78 16 16 H 0.04 2.28 7.58 -2.39 -0.02 2.26 16 17 C -0.56 -30.01 8.46 25.60 0.22 -29.80 16 18 H 0.09 4.42 7.74 -2.91 -0.02 4.39 16 19 C 0.01 0.73 5.20 84.65 0.44 1.17 16 20 N -0.88 -50.40 9.50 21.45 0.20 -50.20 16 21 Si 0.98 42.10 29.54 68.60 2.03 44.12 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 C 0.42 22.49 2.81 71.98 0.20 22.69 16 26 F -0.22 -11.66 15.67 44.97 0.70 -10.96 16 27 F -0.15 -8.84 12.91 44.97 0.58 -8.25 16 28 F -0.20 -10.16 16.94 44.97 0.76 -9.40 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.15 2.77 7.62 -2.91 -0.02 2.75 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.15 2.79 8.03 -2.91 -0.02 2.77 16 36 H 0.12 3.73 6.11 -2.39 -0.01 3.72 16 37 H 0.13 3.00 8.00 -2.38 -0.02 2.98 16 38 H 0.41 15.53 8.54 -92.71 -0.79 14.73 16 39 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -76.41 347.34 6.07 -70.33 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.33 Total: 23.51 kcal Atomic # 6 Polarization: 30.37 SS G_CDS: 4.04 Total: 34.42 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -2.02 Total: -83.78 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.36 Total: -59.99 kcal Atomic # 9 Polarization: -30.66 SS G_CDS: 2.05 Total: -28.61 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -76.41 6.07 -70.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.262 kcal (2) G-P(sol) polarization free energy of solvation -76.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds