Wall clock time and date at job start Wed Apr 1 2020 03:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21250 * 120.00253 * 2 1 4 4 C 1.47181 * 119.99945 * 180.02562 * 2 1 3 5 5 C 1.39887 * 120.14602 * 359.97254 * 4 2 1 6 6 C 1.37885 * 119.93883 * 180.02562 * 5 4 2 7 7 C 1.38336 * 120.23631 * 359.74671 * 6 5 4 8 8 C 1.38851 * 120.29029 * 0.51258 * 7 6 5 9 9 O 1.35917 * 119.96871 * 179.76299 * 8 7 6 10 10 C 1.42903 * 116.99683 * 359.72642 * 9 8 7 11 11 C 1.50709 * 109.46631 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00080 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99692 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.46733 * 325.00143 * 14 13 11 16 16 C 1.50694 * 109.47115 * 204.99781 * 14 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47145 * 84.99707 * 14 13 11 25 25 F 1.39903 * 109.47440 * 180.02562 * 24 14 13 26 26 F 1.39899 * 109.47255 * 300.00046 * 24 14 13 27 27 F 1.39900 * 109.47102 * 59.99912 * 24 14 13 28 28 C 1.38426 * 120.06216 * 359.48769 * 8 7 6 29 29 H 1.09001 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46389 * 299.99602 * 1 2 3 31 31 H 1.08997 * 109.46891 * 59.99368 * 1 2 3 32 32 H 1.08004 * 120.02859 * 0.02562 * 5 4 2 33 33 H 1.08003 * 119.88550 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.85387 * 180.27715 * 7 6 5 35 35 H 1.09003 * 109.47496 * 60.00324 * 10 9 8 36 36 H 1.08992 * 109.47046 * 299.99681 * 10 9 8 37 37 H 0.97005 * 120.00104 * 359.97438 * 13 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.11687 * 180.23180 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5465 -2.4879 -0.0005 6 6 2.2403 -3.6795 -0.0005 7 6 3.6236 -3.6802 -0.0059 8 6 4.3246 -2.4816 -0.0005 9 8 5.6838 -2.4900 -0.0009 10 6 6.3246 -3.7673 -0.0009 11 6 7.8199 -3.5790 -0.0020 12 8 8.2903 -2.4611 -0.0023 13 7 8.6343 -4.6529 -0.0027 14 6 10.0878 -4.4699 -0.0033 15 1 10.3428 -3.5891 -0.5925 16 6 10.7467 -5.6845 -0.6043 17 1 10.1433 -6.5105 -0.9509 18 6 12.1202 -5.7420 -0.7109 19 7 12.8552 -4.7365 -0.2884 20 14 12.9371 -7.2479 -1.4553 21 1 14.4105 -7.0624 -1.4560 22 1 12.5891 -8.4476 -0.6524 23 1 12.4611 -7.4306 -2.8501 24 6 10.5786 -4.2819 1.4336 25 9 11.9666 -4.1066 1.4331 26 9 9.9669 -3.1543 1.9917 27 9 10.2512 -5.4124 2.1899 28 6 3.6405 -1.2782 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.4665 -2.4911 -0.0005 33 1 1.7017 -4.6157 -0.0009 34 1 4.1607 -4.6172 -0.0104 35 1 6.0281 -4.3227 -0.8907 36 1 6.0286 -4.3223 0.8892 37 1 8.2580 -5.5470 -0.0022 38 1 13.8214 -4.7771 -0.3630 39 1 4.1849 -0.3455 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:54 Heat of formation + Delta-G solvation = -214.378887 kcal Electronic energy + Delta-G solvation = -29725.750038 eV Core-core repulsion = 24799.102890 eV Total energy + Delta-G solvation = -4926.647148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.41602 -46.07163 -45.67528 -40.68066 -39.64402 -38.72963 -37.14536 -34.76250 -32.70921 -32.02759 -31.34622 -29.67911 -29.05373 -27.27892 -24.64616 -24.05677 -22.68410 -21.78221 -20.32908 -19.91682 -18.30899 -17.76531 -16.98418 -16.75848 -16.72074 -16.52978 -16.27090 -16.08261 -15.80663 -15.35299 -15.28207 -15.05226 -14.82886 -14.18238 -14.01755 -13.85249 -13.29240 -12.99887 -12.93722 -12.78142 -12.76337 -12.56002 -12.46488 -12.36661 -12.33468 -12.07876 -12.01503 -11.87749 -11.30777 -11.29246 -11.20526 -10.92913 -10.85630 -10.47608 -10.09030 -9.77389 -9.37620 -9.35500 -8.79940 -8.51755 -8.41581 -6.30275 -4.55533 0.32214 1.11896 2.10991 2.62631 2.96591 3.15482 3.20702 3.22225 3.48536 3.66425 3.96602 4.15532 4.43162 4.48283 4.57510 4.57953 4.73824 4.83064 4.86275 4.97819 5.03281 5.04002 5.06957 5.15248 5.30374 5.54740 5.61258 5.75771 5.79434 5.93264 6.00897 6.03335 6.12409 6.32615 6.81167 6.97804 7.16603 7.20710 7.36529 7.55279 8.12443 8.40619 8.68741 9.12480 10.61236 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002245 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.798043 B =12467.755877 C =12934.159566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.453 6.453 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.091 4.091 7 C -0.181 4.181 8 C 0.125 3.875 9 O -0.283 6.283 10 C 0.041 3.959 11 C 0.506 3.494 12 O -0.510 6.510 13 N -0.707 5.707 14 C 0.247 3.753 15 H 0.087 0.913 16 C -0.555 4.555 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.838 5.838 20 Si 0.917 3.083 21 H -0.283 1.283 22 H -0.273 1.273 23 H -0.272 1.272 24 C 0.416 3.584 25 F -0.135 7.135 26 F -0.217 7.217 27 F -0.209 7.209 28 C -0.092 4.092 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.270 0.730 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.280 -1.204 0.061 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.273 3.727 3 O -0.328 6.328 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.200 4.200 8 C 0.079 3.921 9 O -0.195 6.195 10 C -0.038 4.038 11 C 0.289 3.711 12 O -0.384 6.384 13 N -0.359 5.359 14 C 0.142 3.858 15 H 0.105 0.895 16 C -0.592 4.592 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.471 5.471 20 Si 0.743 3.257 21 H -0.208 1.208 22 H -0.198 1.198 23 H -0.197 1.197 24 C 0.360 3.640 25 F -0.117 7.117 26 F -0.199 7.199 27 F -0.191 7.191 28 C -0.110 4.110 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.227 0.445 0.110 21.232 hybrid contribution 0.342 -1.618 0.031 1.654 sum -20.886 -1.173 0.141 20.919 Atomic orbital electron populations 1.22232 0.93500 1.04918 1.05037 1.22502 0.91706 0.87461 0.71069 1.90572 1.72070 1.34304 1.35861 1.20293 0.93272 0.95134 1.04964 1.21371 1.00104 0.91304 1.00844 1.20914 0.93309 0.98318 0.98390 1.21595 0.95674 0.97394 1.05346 1.18984 0.82852 0.93933 0.96320 1.86235 1.15425 1.29854 1.87997 1.22599 0.92457 0.85117 1.03620 1.19914 0.87267 0.85894 0.78002 1.90769 1.76609 1.23733 1.47276 1.45925 1.07540 1.08149 1.74292 1.19772 0.75466 1.02577 0.87967 0.89525 1.20808 0.92021 1.02166 1.44164 0.90385 1.25097 0.97134 0.97570 0.94641 1.70387 1.06645 1.30178 1.39868 0.86241 0.78182 0.81670 0.79576 1.20824 1.19788 1.19750 1.23127 0.77785 0.71686 0.91397 1.93411 1.27355 1.94768 1.96124 1.93081 1.83965 1.54514 1.88351 1.92989 1.92882 1.53613 1.79600 1.20696 0.92765 0.97326 1.00248 0.89645 0.88679 0.88682 0.84723 0.84973 0.84681 0.88922 0.89026 0.76604 0.91922 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.05 10.19 36.01 0.37 -0.68 16 2 C 0.39 3.88 7.23 -30.68 -0.22 3.66 16 3 O -0.45 -6.25 17.09 5.58 0.10 -6.16 16 4 C -0.14 -1.38 5.87 -105.08 -0.62 -1.99 16 5 C -0.12 -0.87 9.45 -39.09 -0.37 -1.24 16 6 C -0.09 -0.68 10.02 -39.67 -0.40 -1.08 16 7 C -0.18 -1.72 9.04 -39.32 -0.36 -2.08 16 8 C 0.13 1.60 6.68 -39.29 -0.26 1.33 16 9 O -0.28 -4.43 9.67 -39.39 -0.38 -4.81 16 10 C 0.04 0.55 5.22 36.01 0.19 0.73 16 11 C 0.51 9.59 7.44 -10.98 -0.08 9.51 16 12 O -0.51 -12.15 15.07 -14.35 -0.22 -12.36 16 13 N -0.71 -13.52 4.98 -54.93 -0.27 -13.79 16 14 C 0.25 5.95 2.21 -69.09 -0.15 5.80 16 15 H 0.09 2.35 7.58 -51.93 -0.39 1.96 16 16 C -0.55 -13.62 8.47 -34.44 -0.29 -13.91 16 17 H 0.08 1.77 7.74 -52.49 -0.41 1.37 16 18 C 0.06 1.65 5.20 -17.82 -0.09 1.55 16 19 N -0.84 -22.58 9.50 55.43 0.53 -22.05 16 20 Si 0.92 19.55 29.54 -169.99 -5.02 14.53 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 C 0.42 10.48 2.81 37.16 0.10 10.58 16 25 F -0.14 -3.70 12.91 2.25 0.03 -3.68 16 26 F -0.22 -5.50 15.68 2.25 0.04 -5.46 16 27 F -0.21 -5.00 16.94 2.25 0.04 -4.96 16 28 C -0.09 -1.17 9.54 -38.94 -0.37 -1.54 16 29 H 0.08 0.25 5.60 -51.93 -0.29 -0.04 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 0.55 5.92 -52.48 -0.31 0.24 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.14 1.00 6.28 -52.49 -0.33 0.67 16 35 H 0.09 0.94 7.64 -51.93 -0.40 0.54 16 36 H 0.09 0.96 7.67 -51.93 -0.40 0.57 16 37 H 0.40 6.19 8.54 -40.82 -0.35 5.84 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.14 2.02 7.65 -52.49 -0.40 1.62 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -33.44 349.31 -6.14 -39.57 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.68 Total: 3.27 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -2.55 Total: 10.64 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.25 Total: -35.85 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.50 Total: -23.33 kcal Atomic # 9 Polarization: -14.20 SS G_CDS: 0.10 Total: -14.10 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.44 -6.14 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.806 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds