Wall clock time and date at job start Wed Apr 1 2020 03:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21250 * 120.00253 * 2 1 4 4 C 1.47181 * 119.99945 * 180.02562 * 2 1 3 5 5 C 1.39887 * 120.14602 * 359.97254 * 4 2 1 6 6 C 1.37885 * 119.93883 * 180.02562 * 5 4 2 7 7 C 1.38336 * 120.23631 * 359.74671 * 6 5 4 8 8 C 1.38851 * 120.29029 * 0.51258 * 7 6 5 9 9 O 1.35917 * 119.96871 * 179.76299 * 8 7 6 10 10 C 1.42903 * 116.99683 * 359.72642 * 9 8 7 11 11 C 1.50709 * 109.46631 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00080 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99692 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.46733 * 325.00143 * 14 13 11 16 16 C 1.50694 * 109.47115 * 204.99781 * 14 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47145 * 84.99707 * 14 13 11 25 25 F 1.39903 * 109.47440 * 180.02562 * 24 14 13 26 26 F 1.39899 * 109.47255 * 300.00046 * 24 14 13 27 27 F 1.39900 * 109.47102 * 59.99912 * 24 14 13 28 28 C 1.38426 * 120.06216 * 359.48769 * 8 7 6 29 29 H 1.09001 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46389 * 299.99602 * 1 2 3 31 31 H 1.08997 * 109.46891 * 59.99368 * 1 2 3 32 32 H 1.08004 * 120.02859 * 0.02562 * 5 4 2 33 33 H 1.08003 * 119.88550 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.85387 * 180.27715 * 7 6 5 35 35 H 1.09003 * 109.47496 * 60.00324 * 10 9 8 36 36 H 1.08992 * 109.47046 * 299.99681 * 10 9 8 37 37 H 0.97005 * 120.00104 * 359.97438 * 13 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.11687 * 180.23180 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5465 -2.4879 -0.0005 6 6 2.2403 -3.6795 -0.0005 7 6 3.6236 -3.6802 -0.0059 8 6 4.3246 -2.4816 -0.0005 9 8 5.6838 -2.4900 -0.0009 10 6 6.3246 -3.7673 -0.0009 11 6 7.8199 -3.5790 -0.0020 12 8 8.2903 -2.4611 -0.0023 13 7 8.6343 -4.6529 -0.0027 14 6 10.0878 -4.4699 -0.0033 15 1 10.3428 -3.5891 -0.5925 16 6 10.7467 -5.6845 -0.6043 17 1 10.1433 -6.5105 -0.9509 18 6 12.1202 -5.7420 -0.7109 19 7 12.8552 -4.7365 -0.2884 20 14 12.9371 -7.2479 -1.4553 21 1 14.4105 -7.0624 -1.4560 22 1 12.5891 -8.4476 -0.6524 23 1 12.4611 -7.4306 -2.8501 24 6 10.5786 -4.2819 1.4336 25 9 11.9666 -4.1066 1.4331 26 9 9.9669 -3.1543 1.9917 27 9 10.2512 -5.4124 2.1899 28 6 3.6405 -1.2782 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.4665 -2.4911 -0.0005 33 1 1.7017 -4.6157 -0.0009 34 1 4.1607 -4.6172 -0.0104 35 1 6.0281 -4.3227 -0.8907 36 1 6.0286 -4.3223 0.8892 37 1 8.2580 -5.5470 -0.0022 38 1 13.8214 -4.7771 -0.3630 39 1 4.1849 -0.3455 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:53 Heat of formation + Delta-G solvation = -236.708498 kcal Electronic energy + Delta-G solvation = -29726.718323 eV Core-core repulsion = 24799.102890 eV Total energy + Delta-G solvation = -4927.615433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.45780 -48.09414 -47.76358 -41.58919 -40.76732 -39.94883 -38.05894 -36.54401 -34.54290 -32.73475 -32.20175 -31.03993 -29.84097 -28.60868 -26.60551 -24.88397 -23.56833 -23.38220 -21.79946 -20.92030 -19.54371 -19.09042 -18.88425 -18.69332 -18.44602 -17.54376 -17.43277 -17.23519 -16.85998 -16.78486 -16.38831 -16.08002 -16.02933 -15.48741 -15.23262 -15.00576 -14.88765 -14.69484 -14.52793 -14.45352 -14.32110 -14.07811 -13.95934 -13.83469 -13.56245 -13.29400 -13.08698 -13.00548 -12.79777 -12.62219 -12.60952 -12.24297 -12.10832 -12.06491 -11.63863 -10.95382 -10.85013 -10.69512 -10.17866 -10.08951 -9.32284 -8.22693 -6.54498 -0.42138 0.38426 1.38731 1.44071 1.45967 1.50905 1.52941 1.59458 2.34557 2.45948 2.61227 2.76432 2.92466 3.14336 3.49658 3.73739 3.79002 3.83911 3.95325 3.98256 4.07201 4.09033 4.17308 4.17525 4.32486 4.48622 4.67799 4.77722 4.85839 4.89866 5.08248 5.25750 5.29104 5.30440 5.40147 5.49646 5.62105 5.68307 6.27309 6.49928 6.50176 6.62101 7.13472 7.25797 8.69899 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002245 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.798043 B =12467.755877 C =12934.159566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.391 3.609 3 O -0.510 6.510 4 C -0.151 4.151 5 C -0.097 4.097 6 C -0.083 4.083 7 C -0.175 4.175 8 C 0.097 3.903 9 O -0.326 6.326 10 C 0.052 3.948 11 C 0.499 3.501 12 O -0.569 6.569 13 N -0.697 5.697 14 C 0.253 3.747 15 H 0.045 0.955 16 C -0.560 4.560 17 H 0.099 0.901 18 C 0.012 3.988 19 N -0.876 5.876 20 Si 0.986 3.014 21 H -0.288 1.288 22 H -0.263 1.263 23 H -0.261 1.261 24 C 0.412 3.588 25 F -0.151 7.151 26 F -0.222 7.222 27 F -0.200 7.200 28 C -0.129 4.129 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.421 0.579 38 H 0.268 0.732 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.096 -5.089 -0.396 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.273 3.727 3 O -0.389 6.389 4 C -0.152 4.152 5 C -0.114 4.114 6 C -0.101 4.101 7 C -0.193 4.193 8 C 0.052 3.948 9 O -0.240 6.240 10 C -0.026 4.026 11 C 0.285 3.715 12 O -0.447 6.447 13 N -0.350 5.350 14 C 0.145 3.855 15 H 0.063 0.937 16 C -0.597 4.597 17 H 0.117 0.883 18 C -0.193 4.193 19 N -0.510 5.510 20 Si 0.809 3.191 21 H -0.214 1.214 22 H -0.187 1.187 23 H -0.186 1.186 24 C 0.356 3.644 25 F -0.132 7.132 26 F -0.204 7.204 27 F -0.182 7.182 28 C -0.148 4.148 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.197 0.803 33 H 0.194 0.806 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.258 0.742 38 H 0.078 0.922 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -25.112 -3.496 -0.347 25.356 hybrid contribution 1.425 -0.389 0.201 1.490 sum -23.687 -3.885 -0.146 24.004 Atomic orbital electron populations 1.22281 0.89179 1.07353 1.05935 1.23331 0.93972 0.86513 0.68881 1.90556 1.73582 1.36028 1.38769 1.20544 0.92190 0.96901 1.05565 1.21893 1.02194 0.89818 0.97521 1.21482 0.92518 1.00019 0.96060 1.21955 0.96874 0.96725 1.03761 1.19158 0.81702 0.95208 0.98747 1.86158 1.17496 1.31227 1.89106 1.22617 0.87669 0.85130 1.07164 1.20985 0.89840 0.84661 0.75973 1.90742 1.78190 1.26058 1.49751 1.45711 1.05645 1.09592 1.74026 1.19342 0.78459 1.01027 0.86626 0.93745 1.21208 0.92408 1.02479 1.43576 0.88271 1.26067 0.97978 1.00378 0.94919 1.70539 1.06709 1.32325 1.41462 0.85169 0.76636 0.78084 0.79200 1.21380 1.18732 1.18554 1.23339 0.77168 0.71745 0.92139 1.93381 1.28677 1.94883 1.96250 1.93070 1.83932 1.54897 1.88476 1.92990 1.92736 1.53011 1.79438 1.20679 0.94425 0.96436 1.03231 0.86405 0.87653 0.87625 0.80304 0.80598 0.82024 0.84864 0.85416 0.74163 0.92173 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 10.19 71.24 0.73 -0.72 16 2 C 0.39 7.66 7.23 28.04 0.20 7.86 16 3 O -0.51 -15.28 17.09 -2.94 -0.05 -15.33 16 4 C -0.15 -2.96 5.87 -20.16 -0.12 -3.08 16 5 C -0.10 -1.01 9.45 22.59 0.21 -0.79 16 6 C -0.08 -0.80 10.02 22.21 0.22 -0.58 16 7 C -0.17 -2.70 9.04 22.44 0.20 -2.49 16 8 C 0.10 2.46 6.68 22.46 0.15 2.61 16 9 O -0.33 -10.50 9.67 -73.58 -0.71 -11.21 16 10 C 0.05 1.30 5.22 71.24 0.37 1.67 16 11 C 0.50 19.11 7.44 87.66 0.65 19.76 16 12 O -0.57 -28.68 15.07 16.01 0.24 -28.43 16 13 N -0.70 -26.32 4.98 -446.10 -2.22 -28.54 16 14 C 0.25 12.41 2.21 44.24 0.10 12.51 16 15 H 0.04 2.57 7.58 -2.39 -0.02 2.55 16 16 C -0.56 -27.24 8.47 25.60 0.22 -27.03 16 17 H 0.10 4.29 7.74 -2.91 -0.02 4.27 16 18 C 0.01 0.60 5.20 84.66 0.44 1.04 16 19 N -0.88 -48.41 9.50 21.45 0.20 -48.20 16 20 Si 0.99 39.44 29.54 68.60 2.03 41.47 16 21 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 C 0.41 21.24 2.81 71.98 0.20 21.45 16 25 F -0.15 -8.53 12.91 44.97 0.58 -7.94 16 26 F -0.22 -11.64 15.68 44.97 0.70 -10.93 16 27 F -0.20 -9.51 16.94 44.97 0.76 -8.75 16 28 C -0.13 -3.54 9.54 22.68 0.22 -3.32 16 29 H 0.12 0.07 5.60 -2.39 -0.01 0.06 16 30 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.18 0.24 5.92 -2.91 -0.02 0.22 16 33 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 34 H 0.16 1.54 6.28 -2.91 -0.02 1.52 16 35 H 0.13 2.23 7.64 -2.39 -0.02 2.21 16 36 H 0.13 2.26 7.67 -2.39 -0.02 2.24 16 37 H 0.42 12.09 8.54 -92.70 -0.79 11.30 16 38 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.11 3.54 7.65 -2.91 -0.02 3.52 16 Total: -1.00 -81.40 349.31 5.68 -75.72 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.35 Total: 13.28 kcal Atomic # 6 Polarization: 25.08 SS G_CDS: 3.80 Total: 28.88 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -2.02 Total: -76.75 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.52 Total: -54.97 kcal Atomic # 9 Polarization: -29.68 SS G_CDS: 2.05 Total: -27.63 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -81.40 5.68 -75.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.990 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds