Wall clock time and date at job start Wed Apr 1 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.88411 * 2 1 4 4 C 1.55125 * 110.94289 * 124.07418 * 2 1 3 5 5 N 1.47424 * 104.72387 * 155.29145 * 4 2 1 6 6 C 1.34774 * 125.64862 * 155.82165 * 5 4 2 7 7 O 1.21694 * 119.99858 * 359.71262 * 6 5 4 8 8 C 1.46681 * 119.99937 * 179.71761 * 6 5 4 9 9 C 1.37872 * 126.23055 * 179.97438 * 8 6 5 10 10 C 1.39838 * 107.08174 * 179.97438 * 9 8 6 11 11 S 1.76197 * 126.06667 * 180.02562 * 10 9 8 12 12 O 1.42104 * 106.40057 * 90.00115 * 11 10 9 13 13 O 1.42100 * 106.40488 * 222.92053 * 11 10 9 14 14 F 1.60996 * 107.21765 * 336.46295 * 11 10 9 15 15 C 1.35449 * 107.86398 * 359.73555 * 10 9 8 16 16 N 1.35533 * 108.87648 * 0.43491 * 15 10 9 17 17 H 0.97001 * 125.68448 * 179.83250 * 16 15 10 18 18 C 1.47024 * 108.70160 * 335.55100 * 5 4 2 19 19 C 1.54323 * 107.26996 * 1.29052 * 18 5 4 20 20 H 1.08998 * 110.72245 * 263.82643 * 19 18 5 21 21 N 1.46504 * 110.71942 * 140.55459 * 19 18 5 22 22 C 1.36934 * 120.00112 * 86.45000 * 21 19 18 23 23 H 1.08000 * 120.00224 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99863 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00388 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99895 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47439 * 59.99928 * 26 24 22 28 28 H 1.48505 * 109.47337 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46971 * 299.99955 * 26 24 22 30 30 H 1.09007 * 109.47092 * 183.88317 * 1 2 3 31 31 H 1.09004 * 109.47170 * 303.87853 * 1 2 3 32 32 H 1.08999 * 109.47065 * 63.88218 * 1 2 3 33 33 H 1.09006 * 110.49717 * 36.44754 * 4 2 1 34 34 H 1.09008 * 110.34510 * 274.05630 * 4 2 1 35 35 H 1.07990 * 126.46038 * 0.02562 * 9 8 6 36 36 H 1.08009 * 125.56409 * 180.25782 * 15 10 9 37 37 H 1.09004 * 109.88020 * 120.70463 * 18 5 4 38 38 H 1.08994 * 109.88631 * 241.71399 * 18 5 4 39 39 H 0.97008 * 119.99414 * 266.45192 * 21 19 18 40 40 H 0.96997 * 120.00118 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0845 -0.8117 1.2000 5 7 3.4281 -1.2420 0.7725 6 6 4.4491 -1.5601 1.5928 7 8 4.3022 -1.4985 2.7992 8 6 5.7374 -1.9805 1.0313 9 6 6.8621 -2.3326 1.7468 10 6 7.8534 -2.6628 0.8174 11 16 9.4938 -3.1856 1.1920 12 8 9.4501 -4.6023 1.2934 13 8 10.3501 -2.4969 0.2911 14 9 9.8450 -2.6352 2.6637 15 6 7.3268 -2.5157 -0.4218 16 7 6.0434 -2.0957 -0.3058 17 1 5.4396 -1.9112 -1.0423 18 6 3.4679 -1.2730 -0.6969 19 6 2.0862 -0.8075 -1.2025 20 1 1.4472 -1.6630 -1.4211 21 7 2.2278 0.0502 -2.3818 22 6 2.3024 -0.5084 -3.6297 23 1 2.2564 -1.5813 -3.7448 24 6 2.4360 0.3043 -4.7471 25 7 2.4915 1.6119 -4.6070 26 14 2.5370 -0.4577 -6.4496 27 1 1.3011 -1.2360 -6.7178 28 1 2.6763 0.6166 -7.4654 29 1 3.7147 -1.3597 -6.5190 30 1 -0.3634 -1.0254 0.0696 31 1 -0.3634 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9227 33 1 1.4539 -1.6783 1.3986 34 1 2.1524 -0.1800 2.0858 35 1 6.9590 -2.3509 2.8221 36 1 7.8458 -2.7000 -1.3509 37 1 4.2426 -0.5981 -1.0610 38 1 3.6687 -2.2875 -1.0411 39 1 2.2687 1.0139 -2.2784 40 1 2.5852 2.1797 -5.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939159039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:03 Heat of formation + Delta-G solvation = -97.342975 kcal Electronic energy + Delta-G solvation = -27977.402494 eV Core-core repulsion = 23641.963542 eV Total energy + Delta-G solvation = -4335.438952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -48.36880 -41.84219 -39.67205 -37.75388 -37.72716 -36.47546 -34.36932 -33.00430 -31.73566 -30.94451 -29.93699 -27.88782 -26.56129 -24.43951 -23.02758 -22.58976 -21.31020 -20.54856 -20.31216 -20.15825 -18.31502 -17.70554 -17.35635 -16.93925 -16.74279 -16.35530 -16.18806 -15.48572 -15.10394 -14.64963 -14.57318 -14.36136 -14.16300 -14.04344 -13.80984 -13.39557 -13.33059 -13.14166 -13.03582 -12.85921 -12.69501 -12.62215 -12.54433 -12.32950 -11.82052 -11.76758 -11.33901 -11.21405 -10.95103 -10.82035 -10.48996 -10.28495 -10.18124 -9.99607 -9.93552 -9.22959 -8.96374 -8.59754 -7.34251 -6.05738 -3.39026 -0.27938 1.14781 1.61297 2.60306 2.69061 2.96170 3.04555 3.14451 3.24568 3.30649 3.32489 4.15431 4.27530 4.36578 4.50716 4.68179 4.75259 4.81158 4.98978 5.12599 5.26926 5.30310 5.36390 5.42484 5.55307 5.63143 5.78555 5.88013 5.91499 5.98276 6.09021 6.15579 6.19893 6.30862 6.41846 6.59672 6.87361 7.38580 7.42492 7.98328 8.10716 9.23154 9.74441 10.09357 11.15313 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.003125 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.760279 B = 8959.172774 C =11029.709892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.086 0.914 4 C 0.115 3.885 5 N -0.611 5.611 6 C 0.599 3.401 7 O -0.534 6.534 8 C -0.033 4.033 9 C -0.043 4.043 10 C -0.772 4.772 11 S 2.705 3.295 12 O -0.931 6.931 13 O -0.934 6.934 14 F -0.471 7.471 15 C 0.159 3.841 16 N -0.520 5.520 17 H 0.434 0.566 18 C 0.054 3.946 19 C 0.181 3.819 20 H 0.071 0.929 21 N -0.710 5.710 22 C -0.262 4.262 23 H 0.072 0.928 24 C -0.002 4.002 25 N -0.925 5.925 26 Si 0.909 3.091 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.284 1.284 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.194 0.806 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.388 0.612 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -7.166 11.093 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.104 0.896 4 C -0.007 4.007 5 N -0.344 5.344 6 C 0.388 3.612 7 O -0.411 6.411 8 C -0.146 4.146 9 C -0.069 4.069 10 C -0.866 4.866 11 S 2.793 3.207 12 O -0.929 6.929 13 O -0.932 6.932 14 F -0.471 7.471 15 C 0.013 3.987 16 N -0.119 5.119 17 H 0.281 0.719 18 C -0.073 4.073 19 C 0.068 3.932 20 H 0.089 0.911 21 N -0.350 5.350 22 C -0.392 4.392 23 H 0.090 0.910 24 C -0.199 4.199 25 N -0.571 5.571 26 Si 0.739 3.261 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.211 1.211 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.182 0.818 36 H 0.211 0.789 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.223 0.777 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.161 -7.351 11.631 15.511 hybrid contribution -0.768 0.276 -1.582 1.780 sum 6.393 -7.075 10.049 13.853 Atomic orbital electron populations 1.21616 0.93482 1.01736 1.02349 1.22680 0.96658 0.99785 0.94149 0.89572 1.22386 0.81796 0.98437 0.98099 1.48426 1.12375 1.65934 1.07658 1.16598 0.81315 0.77636 0.85628 1.90840 1.82300 1.54715 1.13284 1.20628 0.96946 1.14162 0.82859 1.20856 0.89350 0.97780 0.98878 1.30398 1.23657 1.31494 1.01011 1.02813 0.73878 0.73989 0.70063 1.93760 1.86794 1.27454 1.84918 1.93748 1.64072 1.74849 1.60556 1.93639 1.93896 1.93078 1.66459 1.21743 0.84412 0.94507 0.98050 1.43285 1.12276 1.47743 1.08561 0.71900 1.23643 1.04936 1.00487 0.78185 1.21200 0.90647 0.94204 0.87157 0.91118 1.42380 1.86800 1.05338 1.00449 1.19169 1.44603 0.91916 0.83520 0.90971 1.24791 1.01705 0.95328 0.98120 1.69641 1.55390 1.02355 1.29687 0.86269 0.78014 0.77966 0.83873 1.20991 1.21491 1.21097 0.92713 0.92913 0.91183 0.91101 0.90384 0.81761 0.78907 0.90716 0.92255 0.77687 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.31 37.16 0.35 -1.31 16 2 C -0.11 -1.55 3.26 -88.35 -0.29 -1.84 16 3 H 0.09 1.27 8.00 -51.93 -0.42 0.86 16 4 C 0.12 1.51 6.38 -2.41 -0.02 1.49 16 5 N -0.61 -8.71 3.32 -171.91 -0.57 -9.28 16 6 C 0.60 9.16 7.82 -12.85 -0.10 9.06 16 7 O -0.53 -9.39 17.14 5.19 0.09 -9.30 16 8 C -0.03 -0.45 6.89 -81.98 -0.56 -1.01 16 9 C -0.04 -0.52 10.61 -39.12 -0.41 -0.93 16 10 C -0.77 -7.92 6.09 -39.98 -0.24 -8.16 16 11 S 2.70 24.62 6.95 -107.50 -0.75 23.87 16 12 O -0.93 -10.82 18.04 -57.17 -1.03 -11.85 16 13 O -0.93 -10.54 18.03 -57.17 -1.03 -11.57 16 14 F -0.47 -4.18 17.91 2.25 0.04 -4.14 16 15 C 0.16 1.55 11.81 -16.91 -0.20 1.35 16 16 N -0.52 -5.91 5.61 -9.39 -0.05 -5.96 16 17 H 0.43 4.71 4.92 -40.82 -0.20 4.51 16 18 C 0.05 0.78 4.86 -3.06 -0.01 0.76 16 19 C 0.18 2.91 3.06 -66.10 -0.20 2.71 16 20 H 0.07 1.15 8.02 -51.93 -0.42 0.73 16 21 N -0.71 -14.88 5.18 -51.65 -0.27 -15.15 16 22 C -0.26 -6.23 9.98 -15.06 -0.15 -6.38 16 23 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 24 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 25 N -0.92 -25.19 13.06 55.49 0.72 -24.46 16 26 Si 0.91 20.16 29.55 -169.99 -5.02 15.14 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 30 H 0.05 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16 34 H 0.08 1.02 8.03 -51.92 -0.42 0.60 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.19 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.07 1.14 6.98 -51.93 -0.36 0.78 16 38 H 0.06 0.78 7.22 -51.93 -0.38 0.40 16 39 H 0.39 8.90 7.71 -40.82 -0.31 8.59 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -32.89 357.17 -9.01 -41.89 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.57 Total: 9.82 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.94 Total: -4.39 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.17 Total: -54.85 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.97 Total: -32.72 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.04 Total: -4.14 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 24.62 SS G_CDS: -0.75 Total: 23.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.89 -9.01 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939159039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.449 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds