Wall clock time and date at job start Wed Apr 1 2020 03:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.88411 * 2 1 4 4 C 1.55125 * 110.94289 * 124.07418 * 2 1 3 5 5 N 1.47424 * 104.72387 * 155.29145 * 4 2 1 6 6 C 1.34774 * 125.64862 * 155.82165 * 5 4 2 7 7 O 1.21694 * 119.99858 * 359.71262 * 6 5 4 8 8 C 1.46681 * 119.99937 * 179.71761 * 6 5 4 9 9 C 1.37872 * 126.23055 * 179.97438 * 8 6 5 10 10 C 1.39838 * 107.08174 * 179.97438 * 9 8 6 11 11 S 1.76197 * 126.06667 * 180.02562 * 10 9 8 12 12 O 1.42104 * 106.40057 * 90.00115 * 11 10 9 13 13 O 1.42100 * 106.40488 * 222.92053 * 11 10 9 14 14 F 1.60996 * 107.21765 * 336.46295 * 11 10 9 15 15 C 1.35449 * 107.86398 * 359.73555 * 10 9 8 16 16 N 1.35533 * 108.87648 * 0.43491 * 15 10 9 17 17 H 0.97001 * 125.68448 * 179.83250 * 16 15 10 18 18 C 1.47024 * 108.70160 * 335.55100 * 5 4 2 19 19 C 1.54323 * 107.26996 * 1.29052 * 18 5 4 20 20 H 1.08998 * 110.72245 * 263.82643 * 19 18 5 21 21 N 1.46504 * 110.71942 * 140.55459 * 19 18 5 22 22 C 1.36934 * 120.00112 * 86.45000 * 21 19 18 23 23 H 1.08000 * 120.00224 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99863 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00388 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99895 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47439 * 59.99928 * 26 24 22 28 28 H 1.48505 * 109.47337 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46971 * 299.99955 * 26 24 22 30 30 H 1.09007 * 109.47092 * 183.88317 * 1 2 3 31 31 H 1.09004 * 109.47170 * 303.87853 * 1 2 3 32 32 H 1.08999 * 109.47065 * 63.88218 * 1 2 3 33 33 H 1.09006 * 110.49717 * 36.44754 * 4 2 1 34 34 H 1.09008 * 110.34510 * 274.05630 * 4 2 1 35 35 H 1.07990 * 126.46038 * 0.02562 * 9 8 6 36 36 H 1.08009 * 125.56409 * 180.25782 * 15 10 9 37 37 H 1.09004 * 109.88020 * 120.70463 * 18 5 4 38 38 H 1.08994 * 109.88631 * 241.71399 * 18 5 4 39 39 H 0.97008 * 119.99414 * 266.45192 * 21 19 18 40 40 H 0.96997 * 120.00118 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0845 -0.8117 1.2000 5 7 3.4281 -1.2420 0.7725 6 6 4.4491 -1.5601 1.5928 7 8 4.3022 -1.4985 2.7992 8 6 5.7374 -1.9805 1.0313 9 6 6.8621 -2.3326 1.7468 10 6 7.8534 -2.6628 0.8174 11 16 9.4938 -3.1856 1.1920 12 8 9.4501 -4.6023 1.2934 13 8 10.3501 -2.4969 0.2911 14 9 9.8450 -2.6352 2.6637 15 6 7.3268 -2.5157 -0.4218 16 7 6.0434 -2.0957 -0.3058 17 1 5.4396 -1.9112 -1.0423 18 6 3.4679 -1.2730 -0.6969 19 6 2.0862 -0.8075 -1.2025 20 1 1.4472 -1.6630 -1.4211 21 7 2.2278 0.0502 -2.3818 22 6 2.3024 -0.5084 -3.6297 23 1 2.2564 -1.5813 -3.7448 24 6 2.4360 0.3043 -4.7471 25 7 2.4915 1.6119 -4.6070 26 14 2.5370 -0.4577 -6.4496 27 1 1.3011 -1.2360 -6.7178 28 1 2.6763 0.6166 -7.4654 29 1 3.7147 -1.3597 -6.5190 30 1 -0.3634 -1.0254 0.0696 31 1 -0.3634 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9227 33 1 1.4539 -1.6783 1.3986 34 1 2.1524 -0.1800 2.0858 35 1 6.9590 -2.3509 2.8221 36 1 7.8458 -2.7000 -1.3509 37 1 4.2426 -0.5981 -1.0610 38 1 3.6687 -2.2875 -1.0411 39 1 2.2687 1.0139 -2.2784 40 1 2.5852 2.1797 -5.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939159039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:59 Heat of formation + Delta-G solvation = -122.072170 kcal Electronic energy + Delta-G solvation = -27978.474832 eV Core-core repulsion = 23641.963542 eV Total energy + Delta-G solvation = -4336.511291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -49.13586 -42.76377 -40.81190 -38.99264 -38.59123 -37.33614 -35.95240 -34.24198 -32.83904 -32.38073 -30.87356 -29.30024 -27.59671 -26.04930 -24.19568 -23.47092 -22.50461 -21.49236 -21.46013 -21.02804 -19.33368 -19.10817 -18.53517 -17.77388 -17.69064 -17.50087 -17.23811 -16.56745 -16.52423 -15.80736 -15.40022 -15.39671 -15.35558 -15.14716 -14.99786 -14.76594 -14.55986 -14.14189 -13.94733 -13.87481 -13.81634 -13.55643 -13.48504 -13.41616 -13.05541 -12.94246 -12.82314 -12.65964 -12.29276 -12.21965 -12.07205 -11.73973 -11.53630 -11.37248 -10.97262 -10.86136 -10.03053 -9.62728 -9.11654 -7.96737 -5.27654 -1.06441 0.17890 0.77447 1.50475 1.51880 1.57710 1.62533 1.87373 2.02139 2.05544 2.25956 2.54766 3.20520 3.33267 3.39382 3.63083 3.71532 3.73620 3.78306 3.91002 4.12089 4.19931 4.22096 4.36212 4.45365 4.48777 4.62829 4.72211 4.78962 4.92789 5.04082 5.07920 5.17261 5.28290 5.35743 5.44822 5.53199 6.02181 6.21755 6.25169 6.83108 7.31777 8.01512 8.25508 9.25378 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.003125 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.760279 B = 8959.172774 C =11029.709892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.611 5.611 6 C 0.597 3.403 7 O -0.564 6.564 8 C -0.066 4.066 9 C -0.043 4.043 10 C -0.778 4.778 11 S 2.747 3.253 12 O -0.952 6.952 13 O -0.950 6.950 14 F -0.466 7.466 15 C 0.169 3.831 16 N -0.522 5.522 17 H 0.436 0.564 18 C 0.066 3.934 19 C 0.175 3.825 20 H 0.076 0.924 21 N -0.720 5.720 22 C -0.246 4.246 23 H 0.084 0.916 24 C -0.063 4.063 25 N -0.965 5.965 26 Si 0.965 3.035 27 H -0.280 1.280 28 H -0.303 1.303 29 H -0.274 1.274 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.176 0.824 36 H 0.232 0.768 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.376 0.624 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.292 -8.781 11.354 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.343 5.343 6 C 0.388 3.612 7 O -0.444 6.444 8 C -0.177 4.177 9 C -0.068 4.068 10 C -0.871 4.871 11 S 2.834 3.166 12 O -0.951 6.951 13 O -0.949 6.949 14 F -0.466 7.466 15 C 0.023 3.977 16 N -0.121 5.121 17 H 0.282 0.718 18 C -0.060 4.060 19 C 0.064 3.936 20 H 0.093 0.907 21 N -0.359 5.359 22 C -0.377 4.377 23 H 0.102 0.898 24 C -0.256 4.256 25 N -0.614 5.614 26 Si 0.795 3.205 27 H -0.207 1.207 28 H -0.230 1.230 29 H -0.200 1.200 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.193 0.807 36 H 0.249 0.751 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.209 0.791 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.682 -9.016 11.922 16.806 hybrid contribution -0.908 0.735 -1.551 1.941 sum 6.774 -8.281 10.371 14.901 Atomic orbital electron populations 1.21575 0.92160 1.02811 1.02092 1.22585 0.97682 0.98796 0.93303 0.90910 1.22444 0.81527 0.98949 0.97569 1.48434 1.12727 1.65717 1.07434 1.16840 0.81919 0.77149 0.85323 1.90812 1.82936 1.56284 1.14409 1.20487 0.96703 1.16554 0.83989 1.21166 0.89273 0.96572 0.99811 1.30522 1.23757 1.31741 1.01066 1.01567 0.72820 0.72828 0.69360 1.93730 1.86981 1.29032 1.85308 1.93722 1.64573 1.75154 1.61453 1.93625 1.93832 1.92986 1.66152 1.22510 0.83632 0.92142 0.99436 1.43252 1.12932 1.48058 1.07833 0.71774 1.23332 1.03174 1.01157 0.78310 1.21380 0.91738 0.94023 0.86444 0.90656 1.42480 1.87029 1.05213 1.01163 1.19573 1.41317 0.92373 0.84454 0.89812 1.25463 1.03242 0.95665 1.01266 1.69790 1.58304 1.03578 1.29728 0.85348 0.78253 0.76824 0.80097 1.20655 1.22997 1.20000 0.91288 0.90954 0.93319 0.89434 0.90285 0.80700 0.75143 0.91611 0.90528 0.79142 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 84. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.31 71.98 0.67 -2.32 16 2 C -0.10 -2.76 3.26 -9.33 -0.03 -2.79 16 3 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 4 C 0.12 2.89 6.38 86.93 0.55 3.45 16 5 N -0.61 -16.72 3.32 -816.04 -2.71 -19.44 16 6 C 0.60 17.79 7.82 86.45 0.68 18.47 16 7 O -0.56 -19.62 17.14 -4.33 -0.07 -19.70 16 8 C -0.07 -1.68 6.89 40.35 0.28 -1.40 16 9 C -0.04 -0.95 10.61 22.57 0.24 -0.71 16 10 C -0.78 -14.32 6.09 22.01 0.13 -14.19 16 11 S 2.75 44.63 6.95 -56.49 -0.39 44.24 16 12 O -0.95 -20.39 18.04 -128.00 -2.31 -22.69 16 13 O -0.95 -19.45 18.03 -128.00 -2.31 -21.75 16 14 F -0.47 -7.42 17.91 44.97 0.81 -6.62 16 15 C 0.17 2.85 11.81 83.48 0.99 3.83 16 16 N -0.52 -10.91 5.61 -183.61 -1.03 -11.94 16 17 H 0.44 8.69 4.92 -92.71 -0.46 8.23 16 18 C 0.07 1.82 4.86 86.73 0.42 2.24 16 19 C 0.18 5.44 3.06 46.18 0.14 5.58 16 20 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16 21 N -0.72 -30.00 5.18 -317.33 -1.64 -31.64 16 22 C -0.25 -11.51 9.98 84.03 0.84 -10.67 16 23 H 0.08 3.67 7.83 -2.91 -0.02 3.64 16 24 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 25 N -0.96 -53.57 13.06 21.65 0.28 -53.29 16 26 Si 0.97 41.31 29.55 68.60 2.03 43.34 16 27 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 29 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 30 H 0.07 1.40 8.07 -2.38 -0.02 1.38 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.91 7.99 -2.38 -0.02 1.89 16 34 H 0.08 1.98 8.03 -2.38 -0.02 1.96 16 35 H 0.18 3.35 8.06 -2.92 -0.02 3.33 16 36 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.07 1.95 6.98 -2.38 -0.02 1.94 16 38 H 0.08 1.84 7.22 -2.39 -0.02 1.83 16 39 H 0.38 17.52 7.71 -92.70 -0.72 16.81 16 40 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -69.93 357.17 -2.04 -71.96 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.06 Total: 28.78 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.38 Total: -1.24 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -5.10 Total: -116.31 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -4.69 Total: -64.14 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.81 Total: -6.62 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.39 Total: 44.24 kcal Total: -69.93 -2.04 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939159039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.108 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds