Wall clock time and date at job start Wed Apr 1 2020 03:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.91138 * 2 1 4 4 C 1.54904 * 111.00524 * 236.09904 * 2 1 3 5 5 N 1.47420 * 104.83314 * 204.91310 * 4 2 1 6 6 C 1.34781 * 125.64960 * 204.09275 * 5 4 2 7 7 O 1.21697 * 119.99706 * 0.02562 * 6 5 4 8 8 C 1.46678 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.37871 * 126.22768 * 179.97438 * 8 6 5 10 10 C 1.39834 * 107.08165 * 179.97438 * 9 8 6 11 11 S 1.76204 * 126.06740 * 180.02562 * 10 9 8 12 12 O 1.42101 * 106.40073 * 23.54174 * 11 10 9 13 13 O 1.42104 * 106.40293 * 156.46609 * 11 10 9 14 14 F 1.61001 * 107.21672 * 270.00388 * 11 10 9 15 15 C 1.35452 * 107.86685 * 0.02562 * 10 9 8 16 16 N 1.35535 * 108.86987 * 359.97438 * 15 10 9 17 17 H 0.97004 * 125.67555 * 179.97438 * 16 15 10 18 18 C 1.47026 * 108.70219 * 24.35859 * 5 4 2 19 19 C 1.54331 * 107.26420 * 358.58442 * 18 5 4 20 20 H 1.08997 * 110.66857 * 96.52625 * 19 18 5 21 21 N 1.46496 * 110.85015 * 219.67510 * 19 18 5 22 22 C 1.36944 * 120.00094 * 268.69595 * 21 19 18 23 23 H 1.07995 * 119.99680 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00170 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99934 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00029 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47338 * 89.99640 * 26 24 22 28 28 H 1.48503 * 109.47320 * 210.00171 * 26 24 22 29 29 H 1.48504 * 109.47128 * 330.00054 * 26 24 22 30 30 H 1.09005 * 109.46927 * 182.44598 * 1 2 3 31 31 H 1.09004 * 109.46806 * 302.44413 * 1 2 3 32 32 H 1.08999 * 109.47052 * 62.44702 * 1 2 3 33 33 H 1.09003 * 110.36767 * 86.07255 * 4 2 1 34 34 H 1.09001 * 110.46279 * 323.80467 * 4 2 1 35 35 H 1.07994 * 126.46183 * 0.02562 * 9 8 6 36 36 H 1.08006 * 125.56278 * 180.26333 * 15 10 9 37 37 H 1.08997 * 109.87863 * 118.12719 * 18 5 4 38 38 H 1.09002 * 109.88022 * 239.29448 * 18 5 4 39 39 H 0.97005 * 120.00458 * 88.68854 * 21 19 18 40 40 H 0.97000 * 120.00077 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2429 -0.7733 6 6 4.4478 -1.5614 -1.5941 7 8 4.3004 -1.4994 -2.8005 8 6 5.7359 -1.9827 -1.0331 9 6 6.8599 -2.3362 -1.7490 10 6 7.8518 -2.6657 -0.8201 11 16 9.4921 -3.1885 -1.1954 12 8 9.7828 -2.6950 -2.4959 13 8 10.2815 -2.8837 -0.0539 14 9 9.4651 -4.7940 -1.3140 15 6 7.3279 -2.5117 0.4195 16 7 6.0428 -2.0968 0.3038 17 1 5.4396 -1.9117 1.0406 18 6 3.4658 -1.2793 0.6960 19 6 2.0862 -0.8079 1.2022 20 1 1.4452 -1.6614 1.4229 21 7 2.2287 0.0495 2.3815 22 6 2.2001 -0.5003 3.6353 23 1 2.0721 -1.5659 3.7548 24 6 2.3356 0.3121 4.7527 25 7 2.4920 1.6109 4.6070 26 14 2.2958 -0.4378 6.4630 27 1 3.6741 -0.8088 6.8731 28 1 1.7424 0.5500 7.4240 29 1 1.4394 -1.6509 6.4519 30 1 -0.3633 -1.0268 0.0439 31 1 -0.3633 0.5513 0.8673 32 1 -0.3633 0.4754 -0.9111 33 1 2.1560 -0.1719 -2.0837 34 1 1.4525 -1.6703 -1.4044 35 1 6.9564 -2.3544 -2.8245 36 1 7.8505 -2.6862 1.3484 37 1 3.6601 -2.2963 1.0365 38 1 4.2425 -0.6084 1.0631 39 1 2.3433 1.0068 2.2742 40 1 2.5863 2.1786 5.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939159040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:10 Heat of formation + Delta-G solvation = -98.821581 kcal Electronic energy + Delta-G solvation = -27955.024061 eV Core-core repulsion = 23619.520992 eV Total energy + Delta-G solvation = -4335.503070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -48.30887 -41.84639 -39.66666 -37.78850 -37.71396 -36.44658 -34.37053 -32.99317 -31.71509 -30.94557 -29.93211 -27.90187 -26.55778 -24.41239 -22.95807 -22.58822 -21.28220 -20.53527 -20.31414 -20.16789 -18.24226 -17.85350 -17.39122 -16.95165 -16.61776 -16.33329 -16.17219 -15.47375 -15.09834 -14.65814 -14.51847 -14.40242 -14.13713 -13.92132 -13.80547 -13.39127 -13.31604 -13.05909 -13.03571 -12.86796 -12.65223 -12.60378 -12.54122 -12.32318 -11.80893 -11.78176 -11.34248 -11.22308 -10.95670 -10.80739 -10.47007 -10.28563 -10.18453 -10.04379 -9.93912 -9.23446 -8.96193 -8.59314 -7.34540 -6.06210 -3.39391 -0.27149 1.14209 1.54725 2.59536 2.80075 3.01588 3.13321 3.23830 3.29172 3.30553 3.32745 3.83691 4.28456 4.37409 4.54549 4.72525 4.80878 4.81956 4.99772 5.15610 5.27185 5.36077 5.41634 5.44800 5.55157 5.64378 5.78815 5.88922 5.91617 5.98499 6.09982 6.18193 6.20876 6.32959 6.42932 6.59341 6.86112 7.39401 7.43005 7.99951 8.10221 9.22683 9.73921 10.08737 11.14896 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011269 B = 0.003087 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.083364 B = 9068.023110 C =11120.417502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.612 5.612 6 C 0.600 3.400 7 O -0.533 6.533 8 C -0.041 4.041 9 C -0.023 4.023 10 C -0.778 4.778 11 S 2.701 3.299 12 O -0.930 6.930 13 O -0.935 6.935 14 F -0.477 7.477 15 C 0.157 3.843 16 N -0.519 5.519 17 H 0.434 0.566 18 C 0.054 3.946 19 C 0.181 3.819 20 H 0.073 0.927 21 N -0.709 5.709 22 C -0.261 4.261 23 H 0.073 0.927 24 C -0.002 4.002 25 N -0.925 5.925 26 Si 0.908 3.092 27 H -0.288 1.288 28 H -0.289 1.289 29 H -0.280 1.280 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.169 0.831 36 H 0.197 0.803 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.388 0.612 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -9.299 -9.858 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.345 5.345 6 C 0.388 3.612 7 O -0.410 6.410 8 C -0.153 4.153 9 C -0.048 4.048 10 C -0.873 4.873 11 S 2.790 3.210 12 O -0.928 6.928 13 O -0.933 6.933 14 F -0.476 7.476 15 C 0.009 3.991 16 N -0.118 5.118 17 H 0.280 0.720 18 C -0.073 4.073 19 C 0.068 3.932 20 H 0.091 0.909 21 N -0.349 5.349 22 C -0.391 4.391 23 H 0.091 0.909 24 C -0.200 4.200 25 N -0.571 5.571 26 Si 0.739 3.261 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.206 1.206 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.186 0.814 36 H 0.214 0.786 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.223 0.777 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.813 -9.488 -10.409 15.646 hybrid contribution -0.810 0.220 1.679 1.878 sum 6.003 -9.268 -8.730 14.076 Atomic orbital electron populations 1.21598 0.93479 1.01964 1.02001 1.22674 0.96679 0.99834 0.94241 0.89654 1.22329 0.81846 0.98437 0.98119 1.48419 1.12511 1.65920 1.07604 1.16597 0.81289 0.77647 0.85629 1.90847 1.82234 1.54636 1.13281 1.20685 0.97063 1.14809 0.82792 1.20901 0.88507 0.96106 0.99267 1.30487 1.24547 1.31579 1.00658 1.02850 0.73910 0.69475 0.74812 1.93735 1.82985 1.76901 1.39198 1.93735 1.66283 1.81775 1.51553 1.93678 1.96337 1.60910 1.96708 1.22022 0.84238 0.94302 0.98495 1.43325 1.12088 1.47746 1.08626 0.71970 1.23637 1.04915 1.00438 0.78305 1.21209 0.90685 0.94174 0.87151 0.90872 1.42394 1.86131 1.06282 1.00059 1.19225 1.44146 0.92647 0.83092 0.90903 1.24795 1.01677 0.95400 0.98131 1.69654 1.54984 1.02906 1.29519 0.86196 0.77728 0.78092 0.84133 1.21496 1.21532 1.20563 0.92703 0.91278 0.92967 0.90417 0.91172 0.81397 0.78629 0.92227 0.90817 0.77718 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.30 37.16 0.35 -1.31 16 2 C -0.11 -1.58 3.27 -88.47 -0.29 -1.87 16 3 H 0.09 1.27 8.01 -51.93 -0.42 0.86 16 4 C 0.12 1.51 6.37 -2.53 -0.02 1.50 16 5 N -0.61 -8.70 3.33 -172.05 -0.57 -9.28 16 6 C 0.60 9.19 7.82 -12.85 -0.10 9.09 16 7 O -0.53 -9.47 17.14 5.19 0.09 -9.38 16 8 C -0.04 -0.55 6.89 -81.98 -0.56 -1.11 16 9 C -0.02 -0.28 10.44 -39.12 -0.41 -0.68 16 10 C -0.78 -7.84 6.23 -39.98 -0.25 -8.09 16 11 S 2.70 24.35 7.00 -107.50 -0.75 23.60 16 12 O -0.93 -11.05 17.89 -57.17 -1.02 -12.07 16 13 O -0.93 -10.27 17.87 -57.17 -1.02 -11.29 16 14 F -0.48 -4.06 17.91 2.25 0.04 -4.02 16 15 C 0.16 1.46 11.64 -16.91 -0.20 1.26 16 16 N -0.52 -5.75 5.61 -9.39 -0.05 -5.80 16 17 H 0.43 4.57 4.92 -40.82 -0.20 4.37 16 18 C 0.05 0.76 4.87 -3.06 -0.01 0.75 16 19 C 0.18 2.91 3.08 -66.09 -0.20 2.70 16 20 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 21 N -0.71 -14.84 5.15 -51.65 -0.27 -15.11 16 22 C -0.26 -6.20 9.96 -15.06 -0.15 -6.35 16 23 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 24 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 25 N -0.92 -25.19 13.06 55.49 0.72 -24.46 16 26 Si 0.91 20.14 29.55 -169.99 -5.02 15.11 16 27 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 30 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 34 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 35 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.06 0.76 7.26 -51.93 -0.38 0.38 16 38 H 0.07 1.11 6.95 -51.93 -0.36 0.75 16 39 H 0.39 8.91 7.76 -40.82 -0.32 8.59 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -32.74 356.78 -9.00 -41.75 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.58 Total: 9.85 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.94 Total: -4.28 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.17 Total: -54.65 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.96 Total: -32.75 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 24.35 SS G_CDS: -0.75 Total: 23.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.74 -9.00 -41.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939159040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.075 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds