Wall clock time and date at job start Wed Apr 1 2020 03:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.91138 * 2 1 4 4 C 1.54904 * 111.00524 * 236.09904 * 2 1 3 5 5 N 1.47420 * 104.83314 * 204.91310 * 4 2 1 6 6 C 1.34781 * 125.64960 * 204.09275 * 5 4 2 7 7 O 1.21697 * 119.99706 * 0.02562 * 6 5 4 8 8 C 1.46678 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.37871 * 126.22768 * 179.97438 * 8 6 5 10 10 C 1.39834 * 107.08165 * 179.97438 * 9 8 6 11 11 S 1.76204 * 126.06740 * 180.02562 * 10 9 8 12 12 O 1.42101 * 106.40073 * 23.54174 * 11 10 9 13 13 O 1.42104 * 106.40293 * 156.46609 * 11 10 9 14 14 F 1.61001 * 107.21672 * 270.00388 * 11 10 9 15 15 C 1.35452 * 107.86685 * 0.02562 * 10 9 8 16 16 N 1.35535 * 108.86987 * 359.97438 * 15 10 9 17 17 H 0.97004 * 125.67555 * 179.97438 * 16 15 10 18 18 C 1.47026 * 108.70219 * 24.35859 * 5 4 2 19 19 C 1.54331 * 107.26420 * 358.58442 * 18 5 4 20 20 H 1.08997 * 110.66857 * 96.52625 * 19 18 5 21 21 N 1.46496 * 110.85015 * 219.67510 * 19 18 5 22 22 C 1.36944 * 120.00094 * 268.69595 * 21 19 18 23 23 H 1.07995 * 119.99680 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00170 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99934 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00029 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47338 * 89.99640 * 26 24 22 28 28 H 1.48503 * 109.47320 * 210.00171 * 26 24 22 29 29 H 1.48504 * 109.47128 * 330.00054 * 26 24 22 30 30 H 1.09005 * 109.46927 * 182.44598 * 1 2 3 31 31 H 1.09004 * 109.46806 * 302.44413 * 1 2 3 32 32 H 1.08999 * 109.47052 * 62.44702 * 1 2 3 33 33 H 1.09003 * 110.36767 * 86.07255 * 4 2 1 34 34 H 1.09001 * 110.46279 * 323.80467 * 4 2 1 35 35 H 1.07994 * 126.46183 * 0.02562 * 9 8 6 36 36 H 1.08006 * 125.56278 * 180.26333 * 15 10 9 37 37 H 1.08997 * 109.87863 * 118.12719 * 18 5 4 38 38 H 1.09002 * 109.88022 * 239.29448 * 18 5 4 39 39 H 0.97005 * 120.00458 * 88.68854 * 21 19 18 40 40 H 0.97000 * 120.00077 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2429 -0.7733 6 6 4.4478 -1.5614 -1.5941 7 8 4.3004 -1.4994 -2.8005 8 6 5.7359 -1.9827 -1.0331 9 6 6.8599 -2.3362 -1.7490 10 6 7.8518 -2.6657 -0.8201 11 16 9.4921 -3.1885 -1.1954 12 8 9.7828 -2.6950 -2.4959 13 8 10.2815 -2.8837 -0.0539 14 9 9.4651 -4.7940 -1.3140 15 6 7.3279 -2.5117 0.4195 16 7 6.0428 -2.0968 0.3038 17 1 5.4396 -1.9117 1.0406 18 6 3.4658 -1.2793 0.6960 19 6 2.0862 -0.8079 1.2022 20 1 1.4452 -1.6614 1.4229 21 7 2.2287 0.0495 2.3815 22 6 2.2001 -0.5003 3.6353 23 1 2.0721 -1.5659 3.7548 24 6 2.3356 0.3121 4.7527 25 7 2.4920 1.6109 4.6070 26 14 2.2958 -0.4378 6.4630 27 1 3.6741 -0.8088 6.8731 28 1 1.7424 0.5500 7.4240 29 1 1.4394 -1.6509 6.4519 30 1 -0.3633 -1.0268 0.0439 31 1 -0.3633 0.5513 0.8673 32 1 -0.3633 0.4754 -0.9111 33 1 2.1560 -0.1719 -2.0837 34 1 1.4525 -1.6703 -1.4044 35 1 6.9564 -2.3544 -2.8245 36 1 7.8505 -2.6862 1.3484 37 1 3.6601 -2.2963 1.0365 38 1 4.2425 -0.6084 1.0631 39 1 2.3433 1.0068 2.2742 40 1 2.5863 2.1786 5.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939159040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:07 Heat of formation + Delta-G solvation = -123.455367 kcal Electronic energy + Delta-G solvation = -27956.092263 eV Core-core repulsion = 23619.520992 eV Total energy + Delta-G solvation = -4336.571271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -49.05586 -42.76752 -40.81058 -38.99032 -38.62228 -37.30589 -35.95419 -34.23422 -32.82794 -32.36857 -30.87265 -29.31227 -27.60062 -26.02595 -24.15037 -23.44725 -22.46954 -21.50224 -21.43418 -21.03697 -19.27758 -19.13577 -18.64524 -17.83233 -17.57379 -17.43716 -17.21759 -16.56311 -16.50949 -15.78857 -15.44766 -15.39211 -15.26153 -15.18689 -14.85669 -14.76261 -14.52584 -14.15014 -13.88078 -13.86881 -13.79429 -13.53845 -13.46799 -13.41387 -13.03349 -12.93685 -12.87153 -12.68131 -12.26318 -12.19127 -12.07139 -11.74259 -11.56392 -11.36963 -10.97295 -10.90428 -10.03147 -9.62749 -9.11369 -7.96779 -5.27623 -1.05609 0.18741 0.70075 1.49715 1.51909 1.58927 1.63105 1.89089 2.03258 2.16107 2.52572 2.54822 3.02732 3.24287 3.33811 3.64345 3.72991 3.73729 3.87233 3.96960 4.12813 4.20533 4.24582 4.37444 4.44953 4.57937 4.63597 4.73274 4.78610 4.92853 5.04218 5.08619 5.17740 5.28720 5.37514 5.44907 5.53673 6.02493 6.21865 6.25865 6.84094 7.31720 8.01330 8.25191 9.25552 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011269 B = 0.003087 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.083364 B = 9068.023110 C =11120.417502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.611 5.611 6 C 0.597 3.403 7 O -0.565 6.565 8 C -0.070 4.070 9 C -0.026 4.026 10 C -0.782 4.782 11 S 2.743 3.257 12 O -0.957 6.957 13 O -0.948 6.948 14 F -0.469 7.469 15 C 0.173 3.827 16 N -0.520 5.520 17 H 0.436 0.564 18 C 0.066 3.934 19 C 0.175 3.825 20 H 0.079 0.921 21 N -0.720 5.720 22 C -0.244 4.244 23 H 0.085 0.915 24 C -0.064 4.064 25 N -0.965 5.965 26 Si 0.965 3.035 27 H -0.287 1.287 28 H -0.304 1.304 29 H -0.268 1.268 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.236 0.764 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.375 0.625 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -11.211 -9.716 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.343 5.343 6 C 0.388 3.612 7 O -0.445 6.445 8 C -0.181 4.181 9 C -0.051 4.051 10 C -0.876 4.876 11 S 2.831 3.169 12 O -0.955 6.955 13 O -0.947 6.947 14 F -0.469 7.469 15 C 0.026 3.974 16 N -0.119 5.119 17 H 0.283 0.717 18 C -0.060 4.060 19 C 0.064 3.936 20 H 0.097 0.903 21 N -0.358 5.358 22 C -0.375 4.375 23 H 0.103 0.897 24 C -0.257 4.257 25 N -0.615 5.615 26 Si 0.795 3.205 27 H -0.214 1.214 28 H -0.231 1.231 29 H -0.193 1.193 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.187 0.813 36 H 0.252 0.748 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.208 0.792 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.219 -11.452 -10.295 17.008 hybrid contribution -0.918 0.738 1.545 1.943 sum 6.301 -10.714 -8.750 15.201 Atomic orbital electron populations 1.21558 0.92184 1.02691 1.02083 1.22574 0.97682 0.98821 0.93469 0.91077 1.22381 0.81631 0.98950 0.97546 1.48426 1.12802 1.65638 1.07448 1.16850 0.81932 0.77161 0.85303 1.90819 1.82903 1.56286 1.14524 1.20484 0.96645 1.17008 0.83994 1.21099 0.88795 0.95409 0.99823 1.30555 1.24486 1.31952 1.00651 1.01587 0.72869 0.68889 0.73544 1.93699 1.83391 1.77728 1.40732 1.93712 1.66691 1.82229 1.52071 1.93666 1.96277 1.60275 1.96652 1.22761 0.83336 0.91604 0.99710 1.43278 1.12816 1.48068 1.07774 0.71745 1.23341 1.03131 1.01271 0.78303 1.21393 0.91816 0.93976 0.86376 0.90330 1.42493 1.86376 1.06169 1.00758 1.19623 1.40822 0.93031 0.84040 0.89746 1.25467 1.03221 0.95742 1.01296 1.69801 1.57915 1.04158 1.29581 0.85270 0.77619 0.77250 0.80336 1.21358 1.23101 1.19321 0.91420 0.93360 0.90936 0.90459 0.89448 0.81279 0.74766 0.90253 0.91645 0.79203 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.30 71.98 0.67 -2.32 16 2 C -0.11 -2.82 3.27 -9.40 -0.03 -2.85 16 3 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 4 C 0.12 2.91 6.37 86.85 0.55 3.46 16 5 N -0.61 -16.69 3.33 -816.47 -2.72 -19.41 16 6 C 0.60 17.93 7.82 86.45 0.68 18.60 16 7 O -0.57 -20.06 17.14 -4.34 -0.07 -20.13 16 8 C -0.07 -1.78 6.89 40.35 0.28 -1.51 16 9 C -0.03 -0.60 10.44 22.57 0.24 -0.36 16 10 C -0.78 -14.17 6.23 22.01 0.14 -14.03 16 11 S 2.74 44.23 7.00 -56.49 -0.40 43.84 16 12 O -0.96 -21.59 17.89 -128.00 -2.29 -23.88 16 13 O -0.95 -18.59 17.87 -128.00 -2.29 -20.88 16 14 F -0.47 -6.94 17.91 44.97 0.81 -6.14 16 15 C 0.17 2.73 11.64 83.48 0.97 3.70 16 16 N -0.52 -10.49 5.61 -183.62 -1.03 -11.52 16 17 H 0.44 8.29 4.92 -92.71 -0.46 7.84 16 18 C 0.07 1.77 4.87 86.73 0.42 2.19 16 19 C 0.18 5.41 3.08 46.18 0.14 5.55 16 20 H 0.08 2.37 7.96 -2.39 -0.02 2.35 16 21 N -0.72 -29.83 5.15 -317.32 -1.64 -31.47 16 22 C -0.24 -11.36 9.96 84.03 0.84 -10.53 16 23 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 24 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 25 N -0.96 -53.52 13.06 21.65 0.28 -53.24 16 26 Si 0.97 41.20 29.55 68.60 2.03 43.23 16 27 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 29 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 30 H 0.07 1.41 8.11 -2.38 -0.02 1.39 16 31 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.97 8.04 -2.39 -0.02 1.95 16 34 H 0.09 1.91 8.04 -2.39 -0.02 1.89 16 35 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.24 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.08 1.84 7.26 -2.39 -0.02 1.82 16 38 H 0.07 1.91 6.95 -2.39 -0.02 1.89 16 39 H 0.38 17.48 7.76 -92.70 -0.72 16.76 16 40 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -69.95 356.78 -2.02 -71.97 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.06 Total: 28.49 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.36 Total: -0.86 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -5.10 Total: -115.64 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -4.65 Total: -64.89 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.81 Total: -6.14 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 44.23 SS G_CDS: -0.40 Total: 43.84 kcal Total: -69.95 -2.02 -71.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939159040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.484 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds