Wall clock time and date at job start Wed Apr 1 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00099 * 2 1 4 4 C 1.54320 * 109.88309 * 238.89753 * 2 1 3 5 5 H 1.09004 * 110.87156 * 144.33797 * 4 2 1 6 6 N 1.46500 * 110.71801 * 21.14190 * 4 2 1 7 7 C 1.36934 * 120.00034 * 160.01947 * 6 4 2 8 8 H 1.07999 * 120.00469 * 0.02562 * 7 6 4 9 9 C 1.38815 * 120.00056 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00147 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00117 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47056 * 89.99957 * 11 9 7 13 13 H 1.48506 * 109.47009 * 329.99901 * 11 9 7 14 14 H 1.48494 * 109.47209 * 210.00239 * 11 9 7 15 15 C 1.55152 * 102.94427 * 262.77801 * 4 2 1 16 16 C 1.54904 * 101.58359 * 324.49306 * 15 4 2 17 17 N 1.47024 * 109.88181 * 121.09231 * 2 1 3 18 18 C 1.34777 * 125.64904 * 300.43748 * 17 2 1 19 19 O 1.21694 * 120.00170 * 358.09133 * 18 17 2 20 20 C 1.46680 * 120.00082 * 178.09221 * 18 17 2 21 21 C 1.37874 * 126.23330 * 188.06830 * 20 18 17 22 22 C 1.39833 * 107.08300 * 179.97438 * 21 20 18 23 23 S 1.76201 * 126.06597 * 179.97438 * 22 21 20 24 24 O 1.42105 * 106.40035 * 203.54431 * 23 22 21 25 25 O 1.42100 * 106.40224 * 336.45879 * 23 22 21 26 26 F 1.60991 * 107.21755 * 90.00417 * 23 22 21 27 27 C 1.35453 * 107.86638 * 0.02562 * 22 21 20 28 28 N 1.35534 * 108.87195 * 359.76616 * 27 22 21 29 29 H 0.96997 * 125.67657 * 180.26522 * 28 27 22 30 30 H 1.08994 * 109.47591 * 181.10143 * 1 2 3 31 31 H 1.09007 * 109.46976 * 301.09900 * 1 2 3 32 32 H 1.09003 * 109.47048 * 61.09449 * 1 2 3 33 33 H 0.96997 * 120.00341 * 340.02544 * 6 4 2 34 34 H 0.97000 * 119.99294 * 359.97438 * 10 9 7 35 35 H 1.08994 * 111.00633 * 82.57499 * 15 4 2 36 36 H 1.09005 * 111.00488 * 206.42284 * 15 4 2 37 37 H 1.08999 * 110.36546 * 155.84654 * 16 15 4 38 38 H 1.08997 * 110.37217 * 278.17611 * 16 15 4 39 39 H 1.07991 * 126.45701 * 359.93356 * 21 20 18 40 40 H 1.08000 * 125.56369 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9651 -0.2845 -1.6210 6 7 1.0292 -0.8028 -2.2874 7 6 1.3877 -1.0419 -3.5872 8 1 2.4264 -1.1917 -3.8421 9 6 0.4159 -1.0927 -4.5771 10 7 -0.8501 -0.9106 -4.2664 11 14 0.9048 -1.4196 -6.3501 12 1 0.8889 -2.8822 -6.6064 13 1 2.2706 -0.8893 -6.5927 14 1 -0.0562 -0.7470 -7.2606 15 6 2.3518 -2.1695 -0.6922 16 6 2.8568 -1.8498 0.7369 17 7 2.0300 -0.7140 1.1840 18 6 1.7753 -0.3843 2.4658 19 8 1.1053 0.5994 2.7195 20 6 2.3058 -1.2111 3.5550 21 6 2.0011 -1.0884 4.8940 22 6 2.7257 -2.0735 5.5722 23 16 2.7075 -2.3628 7.3102 24 8 3.9283 -3.0207 7.6202 25 8 2.3072 -1.1414 7.9161 26 9 1.5322 -3.4230 7.6045 27 6 3.4449 -2.7650 4.6561 28 7 3.1949 -2.2540 3.4259 29 1 3.5796 -2.5698 2.5933 30 1 -0.3634 -1.0274 0.0198 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4968 -0.8997 33 1 0.0962 -0.6685 -2.0585 34 1 -1.1040 -0.7413 -3.3457 35 1 1.4451 -2.7737 -0.6602 36 1 3.1269 -2.6620 -1.2794 37 1 2.7087 -2.7080 1.3924 38 1 3.9091 -1.5667 0.7130 39 1 1.3299 -0.3670 5.3359 40 1 4.1060 -3.5917 4.8704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986979936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:54 Heat of formation + Delta-G solvation = -80.994132 kcal Electronic energy + Delta-G solvation = -27951.673233 eV Core-core repulsion = 23616.943219 eV Total energy + Delta-G solvation = -4334.730013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -48.44482 -42.08512 -39.94390 -37.92666 -37.74298 -36.59536 -34.76871 -32.56669 -31.64987 -31.09339 -30.13464 -28.65227 -25.55408 -24.28029 -23.52391 -22.77287 -21.93105 -20.80423 -20.43726 -19.49864 -18.40895 -18.00719 -17.65711 -17.17267 -16.79729 -16.46863 -16.08426 -15.69285 -15.09955 -14.95449 -14.79028 -14.55806 -14.16247 -14.10454 -13.81139 -13.66853 -13.26066 -13.19226 -13.17697 -12.81982 -12.74626 -12.68794 -12.42658 -12.20379 -12.05206 -11.89854 -11.53515 -11.05113 -10.80532 -10.55891 -10.41714 -10.24707 -10.15759 -10.08899 -9.34891 -9.13461 -9.08734 -8.73865 -7.25174 -6.26767 -3.29691 -0.42527 0.93866 1.37973 2.34974 2.64947 2.80603 3.00708 3.14046 3.41805 3.45875 3.60343 3.67329 4.13532 4.27707 4.47185 4.53094 4.57014 4.81173 4.87306 4.96228 5.12928 5.23155 5.27237 5.42107 5.50793 5.64626 5.72899 5.79879 5.88504 5.94744 6.06019 6.23226 6.23976 6.37593 6.49112 6.60471 6.67307 7.31480 7.63679 7.92004 8.58533 9.01972 9.88540 10.01608 11.20701 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.002173 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.003508 B =12883.191243 C =13242.942561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.078 0.922 4 C 0.181 3.819 5 H 0.067 0.933 6 N -0.727 5.727 7 C -0.340 4.340 8 H 0.067 0.933 9 C -0.040 4.040 10 N -0.938 5.938 11 Si 1.083 2.917 12 H -0.295 1.295 13 H -0.294 1.294 14 H -0.287 1.287 15 C -0.150 4.150 16 C 0.082 3.918 17 N -0.608 5.608 18 C 0.599 3.401 19 O -0.520 6.520 20 C -0.039 4.039 21 C -0.021 4.021 22 C -0.775 4.775 23 S 2.700 3.300 24 O -0.936 6.936 25 O -0.927 6.927 26 F -0.475 7.475 27 C 0.152 3.848 28 N -0.525 5.525 29 H 0.429 0.571 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.375 0.625 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.170 0.830 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.232 -6.484 19.757 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.096 0.904 4 C 0.068 3.932 5 H 0.085 0.915 6 N -0.372 5.372 7 C -0.471 4.471 8 H 0.085 0.915 9 C -0.238 4.238 10 N -0.583 5.583 11 Si 0.914 3.086 12 H -0.222 1.222 13 H -0.221 1.221 14 H -0.213 1.213 15 C -0.192 4.192 16 C -0.042 4.042 17 N -0.342 5.342 18 C 0.388 3.612 19 O -0.395 6.395 20 C -0.151 4.151 21 C -0.046 4.046 22 C -0.869 4.869 23 S 2.789 3.211 24 O -0.934 6.934 25 O -0.926 6.926 26 F -0.475 7.475 27 C 0.006 3.994 28 N -0.125 5.125 29 H 0.276 0.724 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.213 0.787 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.188 0.812 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.478 -6.205 18.759 21.914 hybrid contribution 0.648 -0.111 0.513 0.834 sum 10.126 -6.316 19.272 22.668 Atomic orbital electron populations 1.22026 0.94419 1.02452 1.02959 1.21909 0.95507 0.96058 0.83931 0.90392 1.21097 0.93291 0.91736 0.87033 0.91533 1.42667 1.04458 1.86300 1.03749 1.20048 0.94936 1.47167 0.84932 0.91546 1.25826 0.93541 1.00107 1.04352 1.70874 1.16207 1.50943 1.20258 0.83187 0.74445 0.76199 0.74785 1.22229 1.22058 1.21264 1.23566 1.01961 1.01848 0.91819 1.22655 0.95182 0.88108 0.98223 1.48524 1.50247 1.30351 1.05034 1.16547 0.80511 0.84026 0.80160 1.90870 1.39497 1.26454 1.82720 1.20780 1.02304 0.96073 0.95941 1.20951 0.97409 0.96237 0.90031 1.30542 1.18756 1.13841 1.23802 1.02883 0.71813 0.72503 0.73924 1.93730 1.41062 1.75526 1.83128 1.93747 1.82232 1.42252 1.74354 1.93680 1.78075 1.81266 1.94445 1.21991 0.97073 0.97444 0.82902 1.43364 1.33894 1.25398 1.09811 0.72448 0.92478 0.91646 0.90357 0.78744 0.93316 0.90424 0.90049 0.91864 0.90910 0.81249 0.78631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 7.95 37.16 0.30 -2.46 16 2 C 0.13 2.08 3.47 -66.96 -0.23 1.84 16 3 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 4 C 0.18 3.16 3.46 -66.10 -0.23 2.93 16 5 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 6 N -0.73 -16.46 5.02 -51.65 -0.26 -16.72 16 7 C -0.34 -8.80 9.98 -15.06 -0.15 -8.95 16 8 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 9 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 10 N -0.94 -27.66 13.70 55.49 0.76 -26.90 16 11 Si 1.08 24.55 29.92 -169.99 -5.09 19.47 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 C -0.15 -2.12 6.77 -24.59 -0.17 -2.29 16 16 C 0.08 0.86 5.46 -2.53 -0.01 0.84 16 17 N -0.61 -8.26 3.08 -164.54 -0.51 -8.77 16 18 C 0.60 8.63 7.58 -12.85 -0.10 8.54 16 19 O -0.52 -9.15 15.87 5.19 0.08 -9.07 16 20 C -0.04 -0.44 6.84 -81.98 -0.56 -1.00 16 21 C -0.02 -0.23 10.45 -39.12 -0.41 -0.63 16 22 C -0.77 -6.23 6.23 -39.98 -0.25 -6.48 16 23 S 2.70 20.07 7.00 -107.50 -0.75 19.32 16 24 O -0.94 -8.46 17.87 -57.17 -1.02 -9.48 16 25 O -0.93 -9.87 17.89 -57.17 -1.02 -10.89 16 26 F -0.48 -3.47 17.91 2.25 0.04 -3.43 16 27 C 0.15 0.95 11.64 -16.91 -0.20 0.75 16 28 N -0.52 -3.98 5.38 -9.39 -0.05 -4.03 16 29 H 0.43 2.31 5.21 -40.82 -0.21 2.10 16 30 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.06 1.13 6.82 -51.93 -0.35 0.77 16 32 H 0.08 1.45 6.67 -51.93 -0.35 1.11 16 33 H 0.37 8.81 3.76 -40.82 -0.15 8.65 16 34 H 0.26 7.40 6.77 -40.82 -0.28 7.13 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.50 5.53 -51.93 -0.29 0.21 16 38 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 39 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.20 0.42 8.06 -52.49 -0.42 -0.01 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -36.30 347.74 -8.89 -45.19 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.21 Total: 8.19 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.11 Total: -8.11 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.06 Total: -56.42 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.96 Total: -29.44 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.47 kcal Atomic # 16 Polarization: 20.07 SS G_CDS: -0.75 Total: 19.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.30 -8.89 -45.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986979936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.803 kcal (2) G-P(sol) polarization free energy of solvation -36.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds