Wall clock time and date at job start Wed Apr 1 2020 03:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00099 * 2 1 4 4 C 1.54320 * 109.88309 * 238.89753 * 2 1 3 5 5 H 1.09004 * 110.87156 * 144.33797 * 4 2 1 6 6 N 1.46500 * 110.71801 * 21.14190 * 4 2 1 7 7 C 1.36934 * 120.00034 * 160.01947 * 6 4 2 8 8 H 1.07999 * 120.00469 * 0.02562 * 7 6 4 9 9 C 1.38815 * 120.00056 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00147 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00117 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47056 * 89.99957 * 11 9 7 13 13 H 1.48506 * 109.47009 * 329.99901 * 11 9 7 14 14 H 1.48494 * 109.47209 * 210.00239 * 11 9 7 15 15 C 1.55152 * 102.94427 * 262.77801 * 4 2 1 16 16 C 1.54904 * 101.58359 * 324.49306 * 15 4 2 17 17 N 1.47024 * 109.88181 * 121.09231 * 2 1 3 18 18 C 1.34777 * 125.64904 * 300.43748 * 17 2 1 19 19 O 1.21694 * 120.00170 * 358.09133 * 18 17 2 20 20 C 1.46680 * 120.00082 * 178.09221 * 18 17 2 21 21 C 1.37874 * 126.23330 * 188.06830 * 20 18 17 22 22 C 1.39833 * 107.08300 * 179.97438 * 21 20 18 23 23 S 1.76201 * 126.06597 * 179.97438 * 22 21 20 24 24 O 1.42105 * 106.40035 * 203.54431 * 23 22 21 25 25 O 1.42100 * 106.40224 * 336.45879 * 23 22 21 26 26 F 1.60991 * 107.21755 * 90.00417 * 23 22 21 27 27 C 1.35453 * 107.86638 * 0.02562 * 22 21 20 28 28 N 1.35534 * 108.87195 * 359.76616 * 27 22 21 29 29 H 0.96997 * 125.67657 * 180.26522 * 28 27 22 30 30 H 1.08994 * 109.47591 * 181.10143 * 1 2 3 31 31 H 1.09007 * 109.46976 * 301.09900 * 1 2 3 32 32 H 1.09003 * 109.47048 * 61.09449 * 1 2 3 33 33 H 0.96997 * 120.00341 * 340.02544 * 6 4 2 34 34 H 0.97000 * 119.99294 * 359.97438 * 10 9 7 35 35 H 1.08994 * 111.00633 * 82.57499 * 15 4 2 36 36 H 1.09005 * 111.00488 * 206.42284 * 15 4 2 37 37 H 1.08999 * 110.36546 * 155.84654 * 16 15 4 38 38 H 1.08997 * 110.37217 * 278.17611 * 16 15 4 39 39 H 1.07991 * 126.45701 * 359.93356 * 21 20 18 40 40 H 1.08000 * 125.56369 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9651 -0.2845 -1.6210 6 7 1.0292 -0.8028 -2.2874 7 6 1.3877 -1.0419 -3.5872 8 1 2.4264 -1.1917 -3.8421 9 6 0.4159 -1.0927 -4.5771 10 7 -0.8501 -0.9106 -4.2664 11 14 0.9048 -1.4196 -6.3501 12 1 0.8889 -2.8822 -6.6064 13 1 2.2706 -0.8893 -6.5927 14 1 -0.0562 -0.7470 -7.2606 15 6 2.3518 -2.1695 -0.6922 16 6 2.8568 -1.8498 0.7369 17 7 2.0300 -0.7140 1.1840 18 6 1.7753 -0.3843 2.4658 19 8 1.1053 0.5994 2.7195 20 6 2.3058 -1.2111 3.5550 21 6 2.0011 -1.0884 4.8940 22 6 2.7257 -2.0735 5.5722 23 16 2.7075 -2.3628 7.3102 24 8 3.9283 -3.0207 7.6202 25 8 2.3072 -1.1414 7.9161 26 9 1.5322 -3.4230 7.6045 27 6 3.4449 -2.7650 4.6561 28 7 3.1949 -2.2540 3.4259 29 1 3.5796 -2.5698 2.5933 30 1 -0.3634 -1.0274 0.0198 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4968 -0.8997 33 1 0.0962 -0.6685 -2.0585 34 1 -1.1040 -0.7413 -3.3457 35 1 1.4451 -2.7737 -0.6602 36 1 3.1269 -2.6620 -1.2794 37 1 2.7087 -2.7080 1.3924 38 1 3.9091 -1.5667 0.7130 39 1 1.3299 -0.3670 5.3359 40 1 4.1060 -3.5917 4.8704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986979936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:53 Heat of formation + Delta-G solvation = -109.363479 kcal Electronic energy + Delta-G solvation = -27952.903420 eV Core-core repulsion = 23616.943219 eV Total energy + Delta-G solvation = -4335.960201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.06357 -42.83542 -41.05884 -39.00905 -38.62321 -37.30660 -36.39904 -33.88228 -32.72002 -32.26610 -31.23501 -29.97367 -26.90889 -25.73539 -24.94679 -23.54890 -22.90906 -21.60833 -21.09702 -20.77565 -19.58717 -19.32166 -18.65245 -17.90536 -17.51590 -17.43443 -17.20196 -17.01209 -16.33086 -16.08791 -15.59277 -15.45012 -15.20637 -15.15199 -14.93382 -14.88026 -14.52771 -14.10287 -13.90400 -13.87251 -13.86937 -13.51884 -13.48137 -13.41561 -13.38411 -12.94045 -12.66380 -12.65593 -12.46226 -12.05254 -11.87144 -11.78470 -11.36904 -11.25752 -10.96112 -10.89333 -10.08887 -9.67387 -9.16202 -8.39107 -5.35291 -1.05566 0.17375 0.70095 1.51878 1.60043 1.69705 1.83134 1.84471 2.00260 2.15538 2.51890 2.71155 3.02099 3.21504 3.36522 3.47463 3.66201 3.67156 3.85569 3.95407 3.98765 4.11832 4.13159 4.24465 4.30023 4.39959 4.47348 4.58606 4.64895 4.85272 4.98442 5.03597 5.06313 5.14108 5.30040 5.35110 5.60900 6.06716 6.25311 6.48236 6.82377 7.05977 7.96066 8.07344 9.12128 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.002173 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.003508 B =12883.191243 C =13242.942561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.136 3.864 3 H 0.070 0.930 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.744 5.744 7 C -0.326 4.326 8 H 0.075 0.925 9 C -0.105 4.105 10 N -0.978 5.978 11 Si 1.129 2.871 12 H -0.285 1.285 13 H -0.270 1.270 14 H -0.300 1.300 15 C -0.141 4.141 16 C 0.087 3.913 17 N -0.607 5.607 18 C 0.597 3.403 19 O -0.565 6.565 20 C -0.065 4.065 21 C -0.029 4.029 22 C -0.786 4.786 23 S 2.739 3.261 24 O -0.945 6.945 25 O -0.962 6.962 26 F -0.471 7.471 27 C 0.185 3.815 28 N -0.515 5.515 29 H 0.441 0.559 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.367 0.633 34 H 0.243 0.757 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.161 0.839 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.332 -8.833 20.772 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.088 0.912 4 C 0.061 3.939 5 H 0.087 0.913 6 N -0.388 5.388 7 C -0.457 4.457 8 H 0.093 0.907 9 C -0.296 4.296 10 N -0.626 5.626 11 Si 0.954 3.046 12 H -0.211 1.211 13 H -0.195 1.195 14 H -0.226 1.226 15 C -0.182 4.182 16 C -0.035 4.035 17 N -0.340 5.340 18 C 0.387 3.613 19 O -0.444 6.444 20 C -0.176 4.176 21 C -0.055 4.055 22 C -0.880 4.880 23 S 2.827 3.173 24 O -0.944 6.944 25 O -0.960 6.960 26 F -0.471 7.471 27 C 0.038 3.962 28 N -0.117 5.117 29 H 0.290 0.710 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.203 0.797 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.178 0.822 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 12.655 -8.583 19.809 25.024 hybrid contribution -0.256 0.597 0.337 0.731 sum 12.399 -7.986 20.146 24.967 Atomic orbital electron populations 1.21859 0.95662 1.01535 1.01559 1.21617 0.94407 0.96000 0.84841 0.91183 1.21316 0.91963 0.94253 0.86336 0.91299 1.42856 1.05220 1.86679 1.04091 1.20402 0.95042 1.44132 0.86171 0.90743 1.27148 0.93282 1.00999 1.08190 1.70980 1.17677 1.54409 1.19542 0.82594 0.74901 0.76484 0.70585 1.21148 1.19543 1.22639 1.23336 1.01793 0.98755 0.94272 1.22856 0.96211 0.88207 0.96190 1.48483 1.50475 1.30885 1.04187 1.16962 0.79823 0.83814 0.80678 1.90840 1.41609 1.28573 1.83412 1.20234 1.04705 0.97858 0.94796 1.21070 0.97411 0.96620 0.90356 1.30512 1.19420 1.13954 1.24127 1.01675 0.71025 0.71395 0.73171 1.93710 1.41687 1.75619 1.83341 1.93705 1.82796 1.44185 1.75336 1.93668 1.77956 1.81000 1.94438 1.22847 0.95128 0.96711 0.81487 1.43237 1.33144 1.24359 1.10936 0.71039 0.93132 0.92120 0.92466 0.79702 0.94668 0.92388 0.88513 0.88496 0.87360 0.82175 0.73675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 7.95 71.98 0.57 -4.78 16 2 C 0.14 4.40 3.47 45.34 0.16 4.55 16 3 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.17 5.89 3.46 46.18 0.16 6.05 16 5 H 0.07 2.35 8.12 -2.38 -0.02 2.33 16 6 N -0.74 -34.23 5.02 -317.34 -1.59 -35.82 16 7 C -0.33 -16.86 9.98 84.03 0.84 -16.02 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 9 C -0.11 -5.80 5.50 84.86 0.47 -5.34 16 10 N -0.98 -59.48 13.70 21.65 0.30 -59.18 16 11 Si 1.13 49.49 29.92 68.60 2.05 51.55 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 15 C -0.14 -3.66 6.77 31.98 0.22 -3.45 16 16 C 0.09 1.52 5.46 86.85 0.47 1.99 16 17 N -0.61 -15.75 3.08 -792.72 -2.44 -18.19 16 18 C 0.60 16.85 7.58 86.45 0.66 17.51 16 19 O -0.57 -20.53 15.87 -4.33 -0.07 -20.60 16 20 C -0.06 -1.34 6.84 40.35 0.28 -1.06 16 21 C -0.03 -0.57 10.45 22.57 0.24 -0.34 16 22 C -0.79 -10.36 6.23 22.01 0.14 -10.22 16 23 S 2.74 34.76 7.00 -56.49 -0.40 34.37 16 24 O -0.94 -14.14 17.87 -128.00 -2.29 -16.43 16 25 O -0.96 -19.63 17.89 -128.00 -2.29 -21.92 16 26 F -0.47 -5.85 17.91 44.97 0.81 -5.05 16 27 C 0.19 1.40 11.64 83.48 0.97 2.37 16 28 N -0.52 -5.61 5.38 -183.62 -0.99 -6.60 16 29 H 0.44 2.41 5.21 -92.71 -0.48 1.92 16 30 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 31 H 0.06 2.22 6.82 -2.38 -0.02 2.21 16 32 H 0.06 2.29 6.67 -2.39 -0.02 2.27 16 33 H 0.37 18.01 3.76 -92.71 -0.35 17.66 16 34 H 0.24 14.77 6.77 -92.71 -0.63 14.14 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.10 1.07 5.53 -2.39 -0.01 1.06 16 38 H 0.11 1.22 8.11 -2.39 -0.02 1.21 16 39 H 0.16 3.37 8.06 -2.92 -0.02 3.35 16 40 H 0.25 -0.68 8.06 -2.91 -0.02 -0.70 16 Total: -1.00 -82.13 347.74 -1.32 -83.45 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.43 Total: 23.17 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.16 Total: -8.74 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -4.73 Total: -119.80 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -4.65 Total: -58.95 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.81 Total: -5.05 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.55 kcal Atomic # 16 Polarization: 34.76 SS G_CDS: -0.40 Total: 34.37 kcal Total: -82.13 -1.32 -83.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986979936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.917 kcal (2) G-P(sol) polarization free energy of solvation -82.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds