Wall clock time and date at job start Wed Apr 1 2020 03:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.99649 * 2 1 4 4 C 1.54327 * 109.88218 * 238.90887 * 2 1 3 5 5 H 1.08997 * 110.87241 * 336.82544 * 4 2 1 6 6 N 1.46502 * 110.71824 * 100.02620 * 4 2 1 7 7 C 1.36937 * 119.99652 * 199.97208 * 6 4 2 8 8 H 1.08001 * 120.00156 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99800 * 179.97438 * 7 6 4 10 10 N 1.31616 * 120.00293 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99905 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47286 * 270.00297 * 11 9 7 13 13 H 1.48499 * 109.47090 * 150.00397 * 11 9 7 14 14 H 1.48500 * 109.47409 * 30.00275 * 11 9 7 15 15 C 1.55154 * 102.93966 * 218.39098 * 4 2 1 16 16 C 1.54914 * 101.58333 * 35.49898 * 15 4 2 17 17 N 1.47014 * 109.88155 * 121.09683 * 2 1 3 18 18 C 1.34777 * 125.65180 * 298.32548 * 17 2 1 19 19 O 1.21694 * 119.99754 * 354.46877 * 18 17 2 20 20 C 1.46684 * 120.00047 * 174.46804 * 18 17 2 21 21 C 1.37866 * 126.23274 * 173.25925 * 20 18 17 22 22 C 1.39832 * 107.08686 * 180.02562 * 21 20 18 23 23 S 1.76200 * 126.07059 * 180.02562 * 22 21 20 24 24 O 1.42094 * 106.40460 * 203.53844 * 23 22 21 25 25 O 1.42099 * 106.40149 * 336.45952 * 23 22 21 26 26 F 1.61000 * 107.21736 * 89.99452 * 23 22 21 27 27 C 1.35456 * 107.86561 * 359.97438 * 22 21 20 28 28 N 1.35537 * 108.86756 * 359.73337 * 27 22 21 29 29 H 0.96997 * 125.67761 * 180.29848 * 28 27 22 30 30 H 1.08994 * 109.47015 * 181.08740 * 1 2 3 31 31 H 1.09001 * 109.46883 * 301.09636 * 1 2 3 32 32 H 1.09000 * 109.46463 * 61.09110 * 1 2 3 33 33 H 0.97003 * 120.00256 * 19.97470 * 6 4 2 34 34 H 0.97000 * 119.99881 * 0.02562 * 10 9 7 35 35 H 1.08998 * 111.00505 * 153.58157 * 15 4 2 36 36 H 1.09005 * 111.00391 * 277.42924 * 15 4 2 37 37 H 1.09000 * 110.36364 * 81.82975 * 16 15 4 38 38 H 1.08999 * 110.36461 * 204.03561 * 16 15 4 39 39 H 1.07998 * 126.45590 * 0.03131 * 21 20 18 40 40 H 1.07993 * 125.56497 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 1 1.3066 -1.4457 -1.6212 6 7 2.4555 0.1963 -2.2875 7 6 2.5576 -0.2223 -3.5873 8 1 2.3424 -1.2495 -3.8424 9 6 2.9367 0.6739 -4.5773 10 7 3.1985 1.9257 -4.2666 11 14 3.0753 0.1031 -6.3505 12 1 4.4551 -0.3818 -6.6081 13 1 2.7709 1.2364 -7.2605 14 1 2.1100 -0.9992 -6.5926 15 6 3.2877 -1.5142 -0.6925 16 6 2.8145 -1.8794 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8085 -0.3614 2.4657 19 8 1.2299 0.6788 2.7192 20 6 2.2649 -1.2312 3.5550 21 6 2.2247 -0.9397 4.9019 22 6 2.7573 -2.0423 5.5770 23 16 2.9417 -2.2003 7.3222 24 8 3.9742 -3.1538 7.5319 25 8 2.9870 -0.8787 7.8422 26 9 1.5879 -2.8645 7.8863 27 6 3.1053 -2.9680 4.6514 28 7 2.8054 -2.4899 3.4191 29 1 2.9499 -2.9560 2.5808 30 1 -0.3633 -1.0274 0.0195 31 1 -0.3633 0.5308 0.8800 32 1 -0.3632 0.4968 -0.8996 33 1 2.6485 1.1189 -2.0585 34 1 3.1269 2.2221 -3.3457 35 1 3.4853 -2.4109 -1.2798 36 1 4.1655 -0.8688 -0.6604 37 1 2.1886 -2.7715 0.7127 38 1 3.6717 -2.0359 1.3916 39 1 1.8521 -0.0309 5.3509 40 1 3.5458 -3.9314 4.8612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986979949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:00 Heat of formation + Delta-G solvation = -92.057844 kcal Electronic energy + Delta-G solvation = -27824.173528 eV Core-core repulsion = 23488.963756 eV Total energy + Delta-G solvation = -4335.209772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -48.45406 -42.07435 -39.89565 -37.93067 -37.68234 -36.59969 -34.67911 -32.58398 -31.63214 -31.24028 -30.11901 -28.86776 -25.39670 -24.14540 -23.49481 -22.70689 -21.72728 -20.80206 -20.46258 -20.11228 -18.31344 -18.00764 -17.57621 -17.15314 -16.78846 -16.47597 -16.22355 -15.51313 -15.11830 -14.83823 -14.72440 -14.56008 -14.10227 -14.08470 -13.82532 -13.69594 -13.26365 -13.20992 -13.16596 -13.01550 -12.79309 -12.69194 -12.57174 -12.29035 -11.99851 -11.84386 -11.47837 -11.14478 -10.80156 -10.69927 -10.46135 -10.25075 -10.22542 -10.11442 -9.34983 -9.13900 -9.08094 -8.73867 -7.25450 -6.26249 -3.29725 -0.43371 0.92746 1.37379 2.34536 2.64180 2.81238 2.99282 3.13796 3.41979 3.46050 3.60503 3.66670 4.15713 4.27604 4.49246 4.53014 4.57275 4.81782 4.86875 4.94965 5.08772 5.21681 5.26588 5.45276 5.49451 5.59149 5.72922 5.76533 5.80624 5.96897 6.04504 6.14114 6.26240 6.34266 6.39482 6.60190 6.61883 7.31545 7.62934 7.91429 8.58386 9.01183 9.87926 10.00598 11.21316 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031216 B = 0.002144 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.749811 B =13059.228622 C =13413.697501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.183 3.817 5 H 0.068 0.932 6 N -0.725 5.725 7 C -0.340 4.340 8 H 0.067 0.933 9 C -0.039 4.039 10 N -0.938 5.938 11 Si 1.083 2.917 12 H -0.294 1.294 13 H -0.287 1.287 14 H -0.294 1.294 15 C -0.152 4.152 16 C 0.082 3.918 17 N -0.608 5.608 18 C 0.599 3.401 19 O -0.520 6.520 20 C -0.039 4.039 21 C -0.021 4.021 22 C -0.775 4.775 23 S 2.700 3.300 24 O -0.935 6.935 25 O -0.927 6.927 26 F -0.476 7.476 27 C 0.153 3.847 28 N -0.523 5.523 29 H 0.429 0.571 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.370 0.630 34 H 0.257 0.743 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.170 0.830 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -14.242 20.015 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.071 3.929 5 H 0.086 0.914 6 N -0.366 5.366 7 C -0.470 4.470 8 H 0.085 0.915 9 C -0.238 4.238 10 N -0.582 5.582 11 Si 0.914 3.086 12 H -0.222 1.222 13 H -0.213 1.213 14 H -0.221 1.221 15 C -0.193 4.193 16 C -0.041 4.041 17 N -0.342 5.342 18 C 0.388 3.612 19 O -0.396 6.396 20 C -0.151 4.151 21 C -0.046 4.046 22 C -0.870 4.870 23 S 2.789 3.211 24 O -0.934 6.934 25 O -0.925 6.925 26 F -0.475 7.475 27 C 0.007 3.993 28 N -0.122 5.122 29 H 0.273 0.727 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.204 0.796 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.188 0.812 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.560 -13.423 19.022 23.334 hybrid contribution -0.183 -0.624 0.523 0.835 sum -1.744 -14.048 19.545 24.133 Atomic orbital electron populations 1.22050 0.94387 1.01819 1.03023 1.21980 0.94709 0.97024 0.83863 0.90162 1.21161 0.93391 0.91507 0.86801 0.91398 1.42357 1.81983 1.08404 1.03903 1.20001 1.45242 0.97050 0.84736 0.91493 1.25826 0.99206 0.94389 1.04356 1.70859 1.51112 1.15841 1.20379 0.83193 0.75952 0.74705 0.74790 1.22201 1.21261 1.22057 1.23576 1.01750 1.02186 0.91836 1.22611 0.94210 0.88885 0.98433 1.48477 1.52070 1.28673 1.04994 1.16550 0.79718 0.84783 0.80187 1.90874 1.42490 1.23467 1.82726 1.20774 1.11020 0.87541 0.95765 1.20954 0.96230 0.97248 0.90167 1.30546 1.27570 1.05461 1.23375 1.02888 0.70695 0.73930 0.73612 1.93730 1.51789 1.62757 1.85124 1.93748 1.84748 1.36330 1.77720 1.93681 1.72225 1.90840 1.90764 1.21980 0.95933 0.98566 0.82845 1.43145 1.45068 1.14430 1.09523 0.72680 0.92909 0.91893 0.90780 0.79630 0.93184 0.90048 0.90356 0.91318 0.91565 0.81235 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.10 37.16 0.34 -2.01 16 2 C 0.13 2.05 3.18 -66.95 -0.21 1.84 16 3 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 4 C 0.18 3.20 3.11 -66.09 -0.21 3.00 16 5 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 6 N -0.72 -16.55 5.25 -51.65 -0.27 -16.82 16 7 C -0.34 -8.80 9.98 -15.06 -0.15 -8.95 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 C -0.04 -1.08 5.50 -17.43 -0.10 -1.17 16 10 N -0.94 -27.81 13.70 55.49 0.76 -27.05 16 11 Si 1.08 24.60 29.92 -169.99 -5.09 19.51 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 15 C -0.15 -2.18 6.77 -24.58 -0.17 -2.34 16 16 C 0.08 0.87 5.24 -2.53 -0.01 0.85 16 17 N -0.61 -8.31 3.06 -164.54 -0.50 -8.82 16 18 C 0.60 8.66 7.56 -12.85 -0.10 8.56 16 19 O -0.52 -9.22 16.16 5.19 0.08 -9.13 16 20 C -0.04 -0.44 6.82 -81.98 -0.56 -1.00 16 21 C -0.02 -0.22 10.45 -39.12 -0.41 -0.63 16 22 C -0.77 -6.17 6.23 -39.98 -0.25 -6.42 16 23 S 2.70 19.88 7.00 -107.50 -0.75 19.13 16 24 O -0.94 -8.44 17.87 -57.17 -1.02 -9.46 16 25 O -0.93 -9.88 17.89 -57.17 -1.02 -10.90 16 26 F -0.48 -3.35 17.91 2.25 0.04 -3.31 16 27 C 0.15 0.94 11.64 -16.91 -0.20 0.74 16 28 N -0.52 -3.91 5.36 -9.39 -0.05 -3.96 16 29 H 0.43 2.26 5.37 -40.82 -0.22 2.04 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.99 7.09 -51.93 -0.37 0.62 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.37 8.94 6.34 -40.82 -0.26 8.68 16 34 H 0.26 7.51 6.77 -40.82 -0.28 7.23 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 0.55 7.84 -51.93 -0.41 0.15 16 38 H 0.07 0.55 6.23 -51.93 -0.32 0.23 16 39 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.20 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -36.38 352.69 -8.93 -45.31 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.40 Total: 7.73 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.02 Total: -7.53 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.07 Total: -56.65 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.96 Total: -29.49 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.09 Total: 19.51 kcal Atomic # 16 Polarization: 19.88 SS G_CDS: -0.75 Total: 19.13 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.38 -8.93 -45.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986979949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.751 kcal (2) G-P(sol) polarization free energy of solvation -36.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds