Wall clock time and date at job start Wed Apr 1 2020 03:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.99649 * 2 1 4 4 C 1.54327 * 109.88218 * 238.90887 * 2 1 3 5 5 H 1.08997 * 110.87241 * 336.82544 * 4 2 1 6 6 N 1.46502 * 110.71824 * 100.02620 * 4 2 1 7 7 C 1.36937 * 119.99652 * 199.97208 * 6 4 2 8 8 H 1.08001 * 120.00156 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99800 * 179.97438 * 7 6 4 10 10 N 1.31616 * 120.00293 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99905 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47286 * 270.00297 * 11 9 7 13 13 H 1.48499 * 109.47090 * 150.00397 * 11 9 7 14 14 H 1.48500 * 109.47409 * 30.00275 * 11 9 7 15 15 C 1.55154 * 102.93966 * 218.39098 * 4 2 1 16 16 C 1.54914 * 101.58333 * 35.49898 * 15 4 2 17 17 N 1.47014 * 109.88155 * 121.09683 * 2 1 3 18 18 C 1.34777 * 125.65180 * 298.32548 * 17 2 1 19 19 O 1.21694 * 119.99754 * 354.46877 * 18 17 2 20 20 C 1.46684 * 120.00047 * 174.46804 * 18 17 2 21 21 C 1.37866 * 126.23274 * 173.25925 * 20 18 17 22 22 C 1.39832 * 107.08686 * 180.02562 * 21 20 18 23 23 S 1.76200 * 126.07059 * 180.02562 * 22 21 20 24 24 O 1.42094 * 106.40460 * 203.53844 * 23 22 21 25 25 O 1.42099 * 106.40149 * 336.45952 * 23 22 21 26 26 F 1.61000 * 107.21736 * 89.99452 * 23 22 21 27 27 C 1.35456 * 107.86561 * 359.97438 * 22 21 20 28 28 N 1.35537 * 108.86756 * 359.73337 * 27 22 21 29 29 H 0.96997 * 125.67761 * 180.29848 * 28 27 22 30 30 H 1.08994 * 109.47015 * 181.08740 * 1 2 3 31 31 H 1.09001 * 109.46883 * 301.09636 * 1 2 3 32 32 H 1.09000 * 109.46463 * 61.09110 * 1 2 3 33 33 H 0.97003 * 120.00256 * 19.97470 * 6 4 2 34 34 H 0.97000 * 119.99881 * 0.02562 * 10 9 7 35 35 H 1.08998 * 111.00505 * 153.58157 * 15 4 2 36 36 H 1.09005 * 111.00391 * 277.42924 * 15 4 2 37 37 H 1.09000 * 110.36364 * 81.82975 * 16 15 4 38 38 H 1.08999 * 110.36461 * 204.03561 * 16 15 4 39 39 H 1.07998 * 126.45590 * 0.03131 * 21 20 18 40 40 H 1.07993 * 125.56497 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 1 1.3066 -1.4457 -1.6212 6 7 2.4555 0.1963 -2.2875 7 6 2.5576 -0.2223 -3.5873 8 1 2.3424 -1.2495 -3.8424 9 6 2.9367 0.6739 -4.5773 10 7 3.1985 1.9257 -4.2666 11 14 3.0753 0.1031 -6.3505 12 1 4.4551 -0.3818 -6.6081 13 1 2.7709 1.2364 -7.2605 14 1 2.1100 -0.9992 -6.5926 15 6 3.2877 -1.5142 -0.6925 16 6 2.8145 -1.8794 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8085 -0.3614 2.4657 19 8 1.2299 0.6788 2.7192 20 6 2.2649 -1.2312 3.5550 21 6 2.2247 -0.9397 4.9019 22 6 2.7573 -2.0423 5.5770 23 16 2.9417 -2.2003 7.3222 24 8 3.9742 -3.1538 7.5319 25 8 2.9870 -0.8787 7.8422 26 9 1.5879 -2.8645 7.8863 27 6 3.1053 -2.9680 4.6514 28 7 2.8054 -2.4899 3.4191 29 1 2.9499 -2.9560 2.5808 30 1 -0.3633 -1.0274 0.0195 31 1 -0.3633 0.5308 0.8800 32 1 -0.3632 0.4968 -0.8996 33 1 2.6485 1.1189 -2.0585 34 1 3.1269 2.2221 -3.3457 35 1 3.4853 -2.4109 -1.2798 36 1 4.1655 -0.8688 -0.6604 37 1 2.1886 -2.7715 0.7127 38 1 3.6717 -2.0359 1.3916 39 1 1.8521 -0.0309 5.3509 40 1 3.5458 -3.9314 4.8612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986979949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:58 Heat of formation + Delta-G solvation = -120.915768 kcal Electronic energy + Delta-G solvation = -27825.424901 eV Core-core repulsion = 23488.963756 eV Total energy + Delta-G solvation = -4336.461145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.05886 -42.81625 -40.99969 -38.94734 -38.62653 -37.30886 -36.37314 -33.82835 -32.77399 -32.32979 -31.26447 -30.09745 -26.84172 -25.30857 -25.02566 -23.47333 -22.78326 -21.76663 -21.31136 -21.01544 -19.62410 -19.06339 -18.64629 -17.90805 -17.64912 -17.38788 -17.20514 -16.84115 -16.30424 -15.96440 -15.59207 -15.41120 -15.21155 -15.18961 -14.97728 -14.83368 -14.48186 -14.29807 -13.92781 -13.86778 -13.83859 -13.60630 -13.51946 -13.41772 -13.17857 -12.80820 -12.76828 -12.64382 -12.47311 -12.23547 -11.87852 -11.80967 -11.45178 -11.24482 -10.95855 -10.88931 -10.08759 -9.67592 -9.18226 -8.40017 -5.36938 -1.05906 0.16545 0.70083 1.52271 1.59848 1.69632 1.82681 1.83393 2.01554 2.14478 2.52156 2.70848 3.01878 3.23139 3.36893 3.47000 3.60625 3.73036 3.89148 3.96760 3.98253 4.09516 4.14748 4.24537 4.27440 4.40238 4.49113 4.58737 4.70421 4.86417 4.99831 5.05615 5.08086 5.14764 5.27654 5.33961 5.59707 6.07712 6.25485 6.45909 6.81682 7.02834 7.91349 8.05136 9.11138 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031216 B = 0.002144 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.749811 B =13059.228622 C =13413.697501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 H 0.046 0.954 4 C 0.177 3.823 5 H 0.074 0.926 6 N -0.742 5.742 7 C -0.324 4.324 8 H 0.077 0.923 9 C -0.105 4.105 10 N -0.978 5.978 11 Si 1.129 2.871 12 H -0.285 1.285 13 H -0.300 1.300 14 H -0.268 1.268 15 C -0.144 4.144 16 C 0.088 3.912 17 N -0.608 5.608 18 C 0.596 3.404 19 O -0.567 6.567 20 C -0.064 4.064 21 C -0.029 4.029 22 C -0.786 4.786 23 S 2.739 3.261 24 O -0.945 6.945 25 O -0.963 6.963 26 F -0.470 7.470 27 C 0.187 3.813 28 N -0.514 5.514 29 H 0.441 0.559 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.357 0.643 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.160 0.840 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.105 -18.508 20.935 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.064 0.936 4 C 0.067 3.933 5 H 0.092 0.908 6 N -0.383 5.383 7 C -0.455 4.455 8 H 0.095 0.905 9 C -0.297 4.297 10 N -0.626 5.626 11 Si 0.954 3.046 12 H -0.212 1.212 13 H -0.227 1.227 14 H -0.193 1.193 15 C -0.185 4.185 16 C -0.034 4.034 17 N -0.341 5.341 18 C 0.387 3.613 19 O -0.447 6.447 20 C -0.176 4.176 21 C -0.054 4.054 22 C -0.880 4.880 23 S 2.828 3.172 24 O -0.944 6.944 25 O -0.961 6.961 26 F -0.470 7.470 27 C 0.040 3.960 28 N -0.113 5.113 29 H 0.288 0.712 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.189 0.811 34 H 0.053 0.947 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.178 0.822 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.078 -17.776 19.976 26.762 hybrid contribution -0.362 0.617 0.382 0.811 sum -1.440 -17.159 20.359 26.664 Atomic orbital electron populations 1.21941 0.93746 1.02778 1.01824 1.21661 0.95151 0.95507 0.84765 0.93628 1.21373 0.94997 0.90928 0.86009 0.90805 1.42560 1.82510 1.08813 1.04404 1.20359 1.42214 0.97102 0.85851 0.90492 1.27185 1.00011 0.94164 1.08295 1.70972 1.54607 1.17490 1.19563 0.82598 0.76899 0.74581 0.70478 1.21164 1.22664 1.19320 1.23361 0.98963 1.01723 0.94466 1.22816 0.95641 0.88774 0.96208 1.48457 1.52221 1.29278 1.04179 1.16985 0.78962 0.84624 0.80731 1.90842 1.44705 1.25668 1.83439 1.20205 1.13692 0.89138 0.94539 1.21067 0.96018 0.97848 0.90512 1.30510 1.28485 1.05332 1.23703 1.01659 0.70033 0.72649 0.72891 1.93709 1.52472 1.62880 1.85316 1.93705 1.85370 1.38455 1.78582 1.93669 1.71937 1.90645 1.90722 1.22841 0.92508 0.99229 0.81434 1.43026 1.44598 1.13014 1.10687 0.71200 0.90761 0.92862 0.92169 0.81103 0.94665 0.88385 0.92719 0.87216 0.88544 0.82239 0.73608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.10 71.99 0.66 -3.80 16 2 C 0.13 4.37 3.18 45.35 0.14 4.51 16 3 H 0.05 1.80 7.69 -2.39 -0.02 1.79 16 4 C 0.18 6.07 3.11 46.18 0.14 6.21 16 5 H 0.07 2.47 7.84 -2.39 -0.02 2.45 16 6 N -0.74 -34.62 5.25 -317.33 -1.67 -36.28 16 7 C -0.32 -16.79 9.98 84.03 0.84 -15.95 16 8 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 9 C -0.11 -5.85 5.50 84.86 0.47 -5.39 16 10 N -0.98 -60.09 13.70 21.65 0.30 -59.79 16 11 Si 1.13 49.56 29.92 68.60 2.05 51.61 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 14 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 15 C -0.14 -3.84 6.77 31.99 0.22 -3.62 16 16 C 0.09 1.54 5.24 86.86 0.46 2.00 16 17 N -0.61 -15.98 3.06 -792.69 -2.43 -18.41 16 18 C 0.60 17.04 7.56 86.45 0.65 17.70 16 19 O -0.57 -20.99 16.16 -4.33 -0.07 -21.06 16 20 C -0.06 -1.33 6.82 40.35 0.28 -1.05 16 21 C -0.03 -0.57 10.45 22.57 0.24 -0.34 16 22 C -0.79 -10.25 6.23 22.01 0.14 -10.11 16 23 S 2.74 34.44 7.00 -56.49 -0.40 34.05 16 24 O -0.95 -14.14 17.87 -128.00 -2.29 -16.43 16 25 O -0.96 -19.77 17.89 -128.00 -2.29 -22.06 16 26 F -0.47 -5.56 17.91 44.97 0.81 -4.75 16 27 C 0.19 1.36 11.64 83.48 0.97 2.33 16 28 N -0.51 -5.46 5.36 -183.62 -0.98 -6.45 16 29 H 0.44 2.25 5.37 -92.71 -0.50 1.75 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.74 7.09 -2.39 -0.02 1.72 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.36 18.26 6.34 -92.71 -0.59 17.68 16 34 H 0.24 14.99 6.77 -92.71 -0.63 14.36 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.11 1.15 7.84 -2.39 -0.02 1.13 16 38 H 0.10 1.17 6.23 -2.39 -0.01 1.16 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.25 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: -1.00 -83.24 352.69 -1.60 -84.84 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.17 Total: 22.23 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.19 Total: -7.51 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -4.78 Total: -120.93 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -4.65 Total: -59.55 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.81 Total: -4.75 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Atomic # 16 Polarization: 34.44 SS G_CDS: -0.40 Total: 34.05 kcal Total: -83.24 -1.60 -84.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986979949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.074 kcal (2) G-P(sol) polarization free energy of solvation -83.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds