Wall clock time and date at job start Wed Apr 1 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.87311 * 2 1 4 4 C 1.54329 * 109.88343 * 121.01310 * 2 1 3 5 5 C 1.55157 * 102.94092 * 141.61187 * 4 2 1 6 6 H 1.09003 * 110.99906 * 206.38458 * 5 4 2 7 7 N 1.46498 * 111.00503 * 82.57422 * 5 4 2 8 8 C 1.36938 * 120.00178 * 154.99939 * 7 5 4 9 9 H 1.08000 * 119.99769 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99927 * 179.97438 * 8 7 5 11 11 N 1.31611 * 120.00362 * 359.97438 * 10 8 7 12 12 Si 1.86811 * 119.99690 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46829 * 90.00136 * 12 10 8 14 14 H 1.48500 * 109.46905 * 210.00180 * 12 10 8 15 15 H 1.48499 * 109.47007 * 330.00036 * 12 10 8 16 16 C 1.54906 * 101.58426 * 324.49553 * 5 4 2 17 17 N 1.47023 * 109.88598 * 238.82024 * 2 1 3 18 18 C 1.34780 * 125.64569 * 61.58800 * 17 2 1 19 19 O 1.21694 * 119.99975 * 358.19913 * 18 17 2 20 20 C 1.46674 * 119.99813 * 178.18969 * 18 17 2 21 21 C 1.37873 * 126.23454 * 188.04358 * 20 18 17 22 22 C 1.39830 * 107.09056 * 179.97438 * 21 20 18 23 23 S 1.76197 * 126.07245 * 180.02562 * 22 21 20 24 24 O 1.42098 * 106.40557 * 89.99703 * 23 22 21 25 25 O 1.42102 * 106.39932 * 222.92157 * 23 22 21 26 26 F 1.61007 * 107.21488 * 336.45504 * 23 22 21 27 27 C 1.35456 * 107.86346 * 359.97438 * 22 21 20 28 28 N 1.35543 * 108.87190 * 359.77015 * 27 22 21 29 29 H 0.96995 * 125.67977 * 180.26217 * 28 27 22 30 30 H 1.09005 * 109.46960 * 298.98122 * 1 2 3 31 31 H 1.09007 * 109.46590 * 178.98938 * 1 2 3 32 32 H 1.08996 * 109.47171 * 58.99116 * 1 2 3 33 33 H 1.09005 * 110.71487 * 259.97473 * 4 2 1 34 34 H 1.08998 * 110.72008 * 23.24297 * 4 2 1 35 35 H 0.97000 * 119.99936 * 334.99386 * 7 5 4 36 36 H 0.97004 * 120.00488 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.36724 * 155.84860 * 16 5 4 38 38 H 1.09002 * 110.36731 * 278.17885 * 16 5 4 39 39 H 1.08010 * 126.45323 * 359.97438 * 21 20 18 40 40 H 1.07997 * 125.56613 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2438 5 6 3.2877 -1.5132 0.6946 6 1 3.4856 -2.4088 1.2835 7 7 4.4674 -0.6458 0.6503 8 6 5.7218 -1.1929 0.7004 9 1 5.8413 -2.2638 0.7729 10 6 6.8396 -0.3710 0.6579 11 7 6.6940 0.9340 0.5691 12 14 8.5508 -1.1174 0.7270 13 1 9.0197 -1.4085 -0.6516 14 1 9.4826 -0.1598 1.3751 15 1 8.5100 -2.3770 1.5124 16 6 2.8146 -1.8805 -0.7340 17 7 2.0301 -0.7158 -1.1828 18 6 1.8072 -0.3658 -2.4652 19 8 1.1133 0.6009 -2.7203 20 6 2.4011 -1.1499 -3.5532 21 6 2.3894 -0.8242 -4.8929 22 6 3.0657 -1.8440 -5.5696 23 16 3.3437 -1.9291 -7.3074 24 8 4.5806 -1.2727 -7.5486 25 8 3.0903 -3.2743 -7.6888 26 9 2.2082 -1.0341 -8.0159 27 6 3.4703 -2.7544 -4.6518 28 7 3.0775 -2.3416 -3.4220 29 1 3.2434 -2.8091 -2.5885 30 1 -0.3633 0.4980 0.8990 31 1 -0.3633 -1.0276 -0.0181 32 1 -0.3633 0.5294 -0.8808 33 1 2.3529 -0.0430 2.0201 34 1 1.3051 -1.4436 1.6204 35 1 4.3601 0.3160 0.5855 36 1 7.4752 1.5083 0.5390 37 1 3.6717 -2.0358 -1.3893 38 1 2.1886 -2.7725 -0.7088 39 1 1.9421 0.0533 -5.3361 40 1 4.0195 -3.6597 -4.8647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989460137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:59 Heat of formation + Delta-G solvation = -117.843729 kcal Electronic energy + Delta-G solvation = -28489.838858 eV Core-core repulsion = 24153.510926 eV Total energy + Delta-G solvation = -4336.327932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -49.14830 -42.75084 -40.85904 -38.81220 -38.60206 -37.34894 -35.87118 -33.67892 -33.17077 -32.31188 -30.54096 -30.15447 -27.00775 -25.80992 -24.88990 -23.62183 -22.30599 -21.61491 -21.19917 -20.95548 -19.37681 -19.07018 -18.53933 -17.91968 -17.73936 -17.38157 -17.05574 -16.58204 -16.25392 -15.78329 -15.47995 -15.37392 -15.30832 -15.16346 -15.06585 -14.77273 -14.32993 -14.21817 -13.94536 -13.87128 -13.60027 -13.57113 -13.42879 -13.29605 -13.20182 -12.93908 -12.77239 -12.62784 -12.32712 -12.23739 -12.12830 -11.68860 -11.54340 -11.27307 -11.03084 -10.81975 -9.98049 -9.59146 -9.04578 -7.97087 -5.26992 -1.06928 0.23605 0.79711 1.47877 1.48141 1.56561 1.67624 1.88462 2.06225 2.13552 2.25176 2.53620 3.29322 3.35021 3.39893 3.72258 3.74128 3.80021 3.85470 3.92642 4.06068 4.25957 4.29424 4.38615 4.47317 4.52656 4.60743 4.67448 4.84748 5.00909 5.09347 5.13268 5.18909 5.28176 5.34021 5.44321 5.52470 6.09381 6.23014 6.37872 6.93564 7.30443 8.04339 8.25731 9.26064 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.003781 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.930391 B = 7403.694095 C = 9446.131056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.134 3.866 3 H 0.043 0.957 4 C -0.123 4.123 5 C 0.160 3.840 6 H 0.098 0.902 7 N -0.726 5.726 8 C -0.239 4.239 9 H 0.091 0.909 10 C -0.072 4.072 11 N -0.970 5.970 12 Si 0.966 3.034 13 H -0.292 1.292 14 H -0.305 1.305 15 H -0.261 1.261 16 C 0.055 3.945 17 N -0.598 5.598 18 C 0.593 3.407 19 O -0.570 6.570 20 C -0.060 4.060 21 C -0.053 4.053 22 C -0.780 4.780 23 S 2.745 3.255 24 O -0.958 6.958 25 O -0.945 6.945 26 F -0.467 7.467 27 C 0.170 3.830 28 N -0.516 5.516 29 H 0.438 0.562 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.167 0.833 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 -11.794 -7.703 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.061 0.939 4 C -0.162 4.162 5 C 0.050 3.950 6 H 0.116 0.884 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.109 0.891 10 C -0.265 4.265 11 N -0.620 5.620 12 Si 0.796 3.204 13 H -0.220 1.220 14 H -0.232 1.232 15 H -0.185 1.185 16 C -0.071 4.071 17 N -0.330 5.330 18 C 0.383 3.617 19 O -0.450 6.450 20 C -0.172 4.172 21 C -0.079 4.079 22 C -0.874 4.874 23 S 2.833 3.167 24 O -0.957 6.957 25 O -0.943 6.943 26 F -0.467 7.467 27 C 0.024 3.976 28 N -0.116 5.116 29 H 0.287 0.713 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.185 0.815 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -12.393 -11.464 -8.286 18.807 hybrid contribution 1.145 0.763 0.991 1.696 sum -11.248 -10.702 -7.295 17.154 Atomic orbital electron populations 1.22040 0.93111 1.02888 1.02593 1.21606 0.95337 0.95354 0.84626 0.93877 1.23042 0.97689 1.00168 0.95306 1.21639 0.86246 0.94854 0.92289 0.88383 1.42573 1.01146 1.05421 1.87226 1.19690 0.84030 0.92664 1.40655 0.89147 1.25534 1.01602 0.95643 1.03720 1.69825 1.29396 1.03687 1.59137 0.85246 0.80287 0.77550 0.77285 1.21956 1.23208 1.18537 1.23721 0.94487 0.88621 1.00223 1.48417 1.51202 1.28953 1.04389 1.16887 0.80199 0.83460 0.81171 1.90782 1.41213 1.29412 1.83613 1.20475 1.09053 0.92229 0.95405 1.21111 0.97749 0.98072 0.90970 1.30490 1.25043 1.07768 1.24065 1.01595 0.70725 0.71974 0.72445 1.93738 1.40910 1.76102 1.84908 1.93710 1.84676 1.33850 1.82093 1.93625 1.79277 1.86015 1.87736 1.22553 0.94623 0.98568 0.81847 1.43284 1.39926 1.17710 1.10728 0.71309 0.89791 0.91015 0.93755 0.90454 0.86570 0.79939 0.94314 0.91361 0.87449 0.81507 0.74521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.09 71.98 0.65 -2.87 16 2 C 0.13 3.85 3.46 45.34 0.16 4.00 16 3 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.12 -3.05 6.08 31.78 0.19 -2.85 16 5 C 0.16 4.73 3.72 46.38 0.17 4.91 16 6 H 0.10 2.56 8.09 -2.39 -0.02 2.54 16 7 N -0.73 -31.42 5.23 -316.38 -1.66 -33.08 16 8 C -0.24 -11.55 9.96 84.03 0.84 -10.71 16 9 H 0.09 3.97 7.83 -2.91 -0.02 3.95 16 10 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 11 N -0.97 -57.37 13.06 21.65 0.28 -57.09 16 12 Si 0.97 43.19 29.55 68.60 2.03 45.22 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 C 0.06 1.38 5.15 86.85 0.45 1.83 16 17 N -0.60 -17.98 3.07 -792.71 -2.43 -20.41 16 18 C 0.59 20.14 7.62 86.45 0.66 20.80 16 19 O -0.57 -22.65 15.88 -4.33 -0.07 -22.72 16 20 C -0.06 -1.72 6.84 40.35 0.28 -1.44 16 21 C -0.05 -1.41 10.62 22.57 0.24 -1.17 16 22 C -0.78 -16.41 6.09 22.01 0.13 -16.28 16 23 S 2.75 51.36 6.95 -56.49 -0.39 50.97 16 24 O -0.96 -24.57 18.04 -128.00 -2.31 -26.87 16 25 O -0.94 -19.68 18.03 -128.00 -2.31 -21.99 16 26 F -0.47 -8.56 17.91 44.97 0.81 -7.75 16 27 C 0.17 2.99 11.81 83.48 0.99 3.98 16 28 N -0.52 -11.04 5.38 -183.61 -0.99 -12.02 16 29 H 0.44 7.63 5.21 -92.71 -0.48 7.15 16 30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.04 1.28 6.84 -2.39 -0.02 1.26 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 34 H 0.12 2.00 7.85 -2.39 -0.02 1.98 16 35 H 0.37 18.54 7.86 -92.71 -0.73 17.81 16 36 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 37 H 0.07 1.86 5.53 -2.39 -0.01 1.84 16 38 H 0.11 1.77 8.11 -2.39 -0.02 1.75 16 39 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -78.44 354.68 -1.91 -80.35 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.10 Total: 28.61 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.22 Total: -3.21 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.79 Total: -122.60 kcal Atomic # 8 Polarization: -66.90 SS G_CDS: -4.68 Total: -71.58 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.81 Total: -7.75 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.39 Total: 50.97 kcal Total: -78.44 -1.91 -80.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989460137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.493 kcal (2) G-P(sol) polarization free energy of solvation -78.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds