Wall clock time and date at job start Wed Apr 1 2020 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99790 * 2 1 4 4 O 1.20826 * 120.00254 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00276 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47319 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47340 * 180.02562 * 6 5 3 8 8 C 1.36826 * 120.00107 * 270.00149 * 7 6 5 9 9 H 1.08005 * 120.00323 * 144.53397 * 8 7 6 10 10 C 1.39070 * 119.99995 * 324.53886 * 8 7 6 11 11 N 1.31360 * 119.99992 * 156.49415 * 10 8 7 12 12 Si 1.86789 * 119.99995 * 336.49197 * 10 8 7 13 13 H 1.48502 * 109.47445 * 95.51468 * 12 10 8 14 14 H 1.48496 * 109.47468 * 215.51328 * 12 10 8 15 15 H 1.48508 * 109.47302 * 335.51292 * 12 10 8 16 16 C 1.34774 * 119.99889 * 90.00114 * 7 6 5 17 17 O 1.21670 * 119.99943 * 7.47091 * 16 7 6 18 18 C 1.47137 * 120.00131 * 187.47283 * 16 7 6 19 19 C 1.38505 * 120.60397 * 322.68950 * 18 16 7 20 20 C 1.41755 * 118.70423 * 179.74478 * 19 18 16 21 21 C 1.40337 * 120.19350 * 180.22499 * 20 19 18 22 22 C 1.36488 * 119.87619 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.46916 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.63631 * 0.02562 * 23 22 21 25 25 C 1.39055 * 119.99902 * 359.95249 * 24 23 22 26 26 O 1.35030 * 119.87135 * 179.97438 * 25 24 23 27 27 C 1.34334 * 121.44651 * 180.02562 * 26 25 24 28 28 O 1.21669 * 119.93292 * 179.97438 * 27 26 25 29 29 H 1.09006 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47324 * 299.99542 * 1 2 3 31 31 H 1.09003 * 109.47575 * 60.00178 * 1 2 3 32 32 H 1.08999 * 109.46882 * 60.00051 * 5 3 2 33 33 H 1.08995 * 109.47379 * 300.00412 * 5 3 2 34 34 H 1.09005 * 109.47413 * 60.00142 * 6 5 3 35 35 H 1.09000 * 109.47433 * 300.00079 * 6 5 3 36 36 H 0.96998 * 119.99782 * 185.01356 * 11 10 8 37 37 H 1.08006 * 120.64325 * 0.02562 * 19 18 16 38 38 H 1.08000 * 120.05718 * 0.02562 * 21 20 19 39 39 H 1.07993 * 119.76190 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.68426 * 179.97438 * 23 22 21 41 41 H 1.08008 * 119.99995 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7422 -0.0002 7 7 5.4630 2.8190 -0.0002 8 6 6.1462 2.8554 1.1847 9 1 7.1031 2.3623 1.2717 10 6 5.6084 3.5274 2.2770 11 7 5.9806 3.2049 3.4948 12 14 4.3569 4.8887 2.0125 13 1 2.9860 4.3330 2.1430 14 1 4.5590 5.9514 3.0298 15 1 4.5308 5.4639 0.6545 16 6 6.1359 2.8537 -1.1675 17 8 5.5289 2.9585 -2.2167 18 6 7.6046 2.7649 -1.1729 19 6 8.3519 3.3808 -0.1827 20 6 9.7641 3.2647 -0.2240 21 6 10.5515 3.8722 0.7661 22 6 11.9107 3.7567 0.7198 23 6 12.5219 3.0421 -0.3012 24 6 11.7680 2.4380 -1.2849 25 6 10.3815 2.5406 -1.2598 26 8 9.6457 1.9483 -2.2248 27 6 8.3047 2.0276 -2.2316 28 8 7.6689 1.4837 -3.1149 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9563 0.7808 -0.8891 33 1 3.9557 0.7811 0.8907 34 1 3.6098 3.2369 0.8893 35 1 3.6106 3.2357 -0.8906 36 1 5.5531 3.6221 4.2591 37 1 7.8679 3.9348 0.6080 38 1 10.0827 4.4302 1.5632 39 1 12.5148 4.2247 1.4829 40 1 13.5984 2.9592 -0.3258 41 1 12.2544 1.8847 -2.0748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132451422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:40 Heat of formation + Delta-G solvation = -122.461981 kcal Electronic energy + Delta-G solvation = -30178.418935 eV Core-core repulsion = 25797.614344 eV Total energy + Delta-G solvation = -4380.804592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.53271 -40.24717 -39.08951 -38.56291 -36.84082 -36.33664 -35.18710 -34.31778 -32.47422 -31.24525 -30.65551 -29.63315 -27.63564 -25.51481 -24.92391 -24.03930 -23.60503 -22.64438 -20.65552 -20.04566 -19.13120 -18.24392 -17.46438 -17.15856 -16.66549 -16.45547 -16.39014 -16.34564 -16.01065 -15.32953 -14.90370 -14.75989 -14.59297 -14.13587 -13.88647 -13.78029 -13.54908 -13.21385 -13.07230 -12.97268 -12.75967 -12.50014 -12.39219 -12.11036 -11.88589 -11.81455 -11.71757 -11.35332 -11.21008 -10.99036 -10.66446 -10.49518 -10.25795 -10.10478 -9.99414 -9.91154 -9.43779 -8.84409 -8.76181 -8.09346 -8.05180 -6.72293 -4.32072 0.30315 1.14904 1.84404 2.48639 2.55539 2.83325 2.89682 3.01034 3.12611 3.20685 3.59710 3.88282 3.93353 4.11566 4.44404 4.59695 4.66660 4.76589 4.95010 5.11683 5.12853 5.16497 5.19966 5.22886 5.39212 5.47413 5.48584 5.61506 5.78852 5.85650 5.96956 5.98523 5.99764 6.23773 6.26715 6.40280 6.45876 6.54265 6.60695 6.62530 7.05003 7.44059 7.76285 7.81608 7.94862 8.00341 8.66248 9.06994 9.41830 10.32346 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.003741 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.769958 B = 7482.767338 C = 8883.438463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.469 3.531 4 O -0.511 6.511 5 C -0.124 4.124 6 C 0.116 3.884 7 N -0.453 5.453 8 C -0.369 4.369 9 H 0.114 0.886 10 C 0.074 3.926 11 N -0.843 5.843 12 Si 0.867 3.133 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.256 1.256 16 C 0.537 3.463 17 O -0.568 6.568 18 C -0.229 4.229 19 C 0.030 3.970 20 C -0.147 4.147 21 C -0.045 4.045 22 C -0.149 4.149 23 C -0.069 4.069 24 C -0.142 4.142 25 C 0.146 3.854 26 O -0.273 6.273 27 C 0.520 3.480 28 O -0.440 6.440 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.281 0.719 37 H 0.186 0.814 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -1.144 -0.062 6.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.399 6.399 5 C -0.163 4.163 6 C -0.007 4.007 7 N -0.173 5.173 8 C -0.495 4.495 9 H 0.131 0.869 10 C -0.137 4.137 11 N -0.476 5.476 12 Si 0.694 3.306 13 H -0.192 1.192 14 H -0.210 1.210 15 H -0.180 1.180 16 C 0.326 3.674 17 O -0.450 6.450 18 C -0.234 4.234 19 C 0.010 3.990 20 C -0.148 4.148 21 C -0.063 4.063 22 C -0.167 4.167 23 C -0.087 4.087 24 C -0.160 4.160 25 C 0.100 3.900 26 O -0.185 6.185 27 C 0.366 3.634 28 O -0.324 6.324 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.203 0.797 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.106 -1.103 -0.955 6.278 hybrid contribution -0.948 0.614 0.370 1.188 sum 5.159 -0.489 -0.586 5.215 Atomic orbital electron populations 1.23210 0.77023 1.03287 1.02400 1.86537 1.22979 1.33899 1.84374 1.23940 0.92226 0.81064 0.71597 1.90646 1.67370 1.36319 1.45536 1.21793 0.86333 1.01517 1.06674 1.21415 0.82275 0.93544 1.03456 1.43435 1.03944 1.64352 1.05566 1.19217 1.08311 1.34970 0.87003 0.86863 1.25291 0.97087 0.96687 0.94596 1.69685 1.40431 1.39354 0.98151 0.87057 0.81495 0.82426 0.79642 1.19166 1.21039 1.17989 1.17310 0.85248 0.80773 0.84026 1.90733 1.69057 1.53500 1.31748 1.22161 0.96101 1.07099 0.98055 1.23254 0.90455 0.90305 0.94979 1.18402 0.94728 1.03892 0.97785 1.21192 0.93570 0.95445 0.96119 1.20879 0.94830 1.01378 0.99661 1.21140 1.00024 0.94756 0.92797 1.20568 0.89613 1.04080 1.01758 1.19273 0.90811 0.92935 0.86946 1.83623 1.22629 1.65287 1.46932 1.20311 0.77908 0.79763 0.85435 1.90957 1.59802 1.44386 1.37277 0.88381 0.92068 0.92063 0.87364 0.86505 0.90409 0.89631 0.90885 0.79733 0.83959 0.85061 0.84753 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.55 101.05 1.07 1.48 16 2 O -0.36 -5.76 10.57 -39.25 -0.41 -6.17 16 3 C 0.47 8.68 7.96 36.01 0.29 8.97 16 4 O -0.51 -10.61 15.73 -18.75 -0.29 -10.90 16 5 C -0.12 -2.38 6.13 -27.89 -0.17 -2.55 16 6 C 0.12 2.56 3.58 -4.04 -0.01 2.55 16 7 N -0.45 -10.40 2.20 -116.13 -0.26 -10.66 16 8 C -0.37 -8.48 7.06 -15.01 -0.11 -8.59 16 9 H 0.11 2.65 5.96 -52.48 -0.31 2.34 16 10 C 0.07 1.73 5.30 -17.44 -0.09 1.64 16 11 N -0.84 -20.47 13.95 55.50 0.77 -19.69 16 12 Si 0.87 19.16 25.03 -169.99 -4.25 14.90 16 13 H -0.27 -5.98 6.66 56.52 0.38 -5.60 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 16 C 0.54 12.77 7.22 -12.65 -0.09 12.68 16 17 O -0.57 -15.01 15.79 -9.54 -0.15 -15.16 16 18 C -0.23 -4.83 5.61 -102.73 -0.58 -5.40 16 19 C 0.03 0.53 7.45 -38.14 -0.28 0.25 16 20 C -0.15 -2.23 5.74 -106.85 -0.61 -2.84 16 21 C -0.05 -0.54 9.72 -39.42 -0.38 -0.93 16 22 C -0.15 -1.44 9.97 -40.00 -0.40 -1.83 16 23 C -0.07 -0.63 10.02 -39.50 -0.40 -1.03 16 24 C -0.14 -1.62 9.98 -39.41 -0.39 -2.01 16 25 C 0.15 2.20 6.75 -38.37 -0.26 1.94 16 26 O -0.27 -4.89 9.80 -21.06 -0.21 -5.10 16 27 C 0.52 10.98 8.11 34.19 0.28 11.26 16 28 O -0.44 -10.61 16.88 -24.83 -0.42 -11.03 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 34 H 0.08 1.77 3.04 -51.93 -0.16 1.61 16 35 H 0.09 1.96 7.29 -51.93 -0.38 1.58 16 36 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.19 3.38 5.76 -52.48 -0.30 3.08 16 38 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -31.63 355.27 -6.13 -37.77 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.12 Total: 5.12 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: -2.15 Total: 15.57 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.52 Total: -30.35 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.49 Total: -48.36 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.25 Total: 14.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.63 -6.13 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132451422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.694 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds