Wall clock time and date at job start Wed Apr 1 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99790 * 2 1 4 4 O 1.20826 * 120.00254 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00276 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47319 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47340 * 180.02562 * 6 5 3 8 8 C 1.36826 * 120.00107 * 270.00149 * 7 6 5 9 9 H 1.08005 * 120.00323 * 144.53397 * 8 7 6 10 10 C 1.39070 * 119.99995 * 324.53886 * 8 7 6 11 11 N 1.31360 * 119.99992 * 156.49415 * 10 8 7 12 12 Si 1.86789 * 119.99995 * 336.49197 * 10 8 7 13 13 H 1.48502 * 109.47445 * 95.51468 * 12 10 8 14 14 H 1.48496 * 109.47468 * 215.51328 * 12 10 8 15 15 H 1.48508 * 109.47302 * 335.51292 * 12 10 8 16 16 C 1.34774 * 119.99889 * 90.00114 * 7 6 5 17 17 O 1.21670 * 119.99943 * 7.47091 * 16 7 6 18 18 C 1.47137 * 120.00131 * 187.47283 * 16 7 6 19 19 C 1.38505 * 120.60397 * 322.68950 * 18 16 7 20 20 C 1.41755 * 118.70423 * 179.74478 * 19 18 16 21 21 C 1.40337 * 120.19350 * 180.22499 * 20 19 18 22 22 C 1.36488 * 119.87619 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.46916 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.63631 * 0.02562 * 23 22 21 25 25 C 1.39055 * 119.99902 * 359.95249 * 24 23 22 26 26 O 1.35030 * 119.87135 * 179.97438 * 25 24 23 27 27 C 1.34334 * 121.44651 * 180.02562 * 26 25 24 28 28 O 1.21669 * 119.93292 * 179.97438 * 27 26 25 29 29 H 1.09006 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47324 * 299.99542 * 1 2 3 31 31 H 1.09003 * 109.47575 * 60.00178 * 1 2 3 32 32 H 1.08999 * 109.46882 * 60.00051 * 5 3 2 33 33 H 1.08995 * 109.47379 * 300.00412 * 5 3 2 34 34 H 1.09005 * 109.47413 * 60.00142 * 6 5 3 35 35 H 1.09000 * 109.47433 * 300.00079 * 6 5 3 36 36 H 0.96998 * 119.99782 * 185.01356 * 11 10 8 37 37 H 1.08006 * 120.64325 * 0.02562 * 19 18 16 38 38 H 1.08000 * 120.05718 * 0.02562 * 21 20 19 39 39 H 1.07993 * 119.76190 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.68426 * 179.97438 * 23 22 21 41 41 H 1.08008 * 119.99995 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7422 -0.0002 7 7 5.4630 2.8190 -0.0002 8 6 6.1462 2.8554 1.1847 9 1 7.1031 2.3623 1.2717 10 6 5.6084 3.5274 2.2770 11 7 5.9806 3.2049 3.4948 12 14 4.3569 4.8887 2.0125 13 1 2.9860 4.3330 2.1430 14 1 4.5590 5.9514 3.0298 15 1 4.5308 5.4639 0.6545 16 6 6.1359 2.8537 -1.1675 17 8 5.5289 2.9585 -2.2167 18 6 7.6046 2.7649 -1.1729 19 6 8.3519 3.3808 -0.1827 20 6 9.7641 3.2647 -0.2240 21 6 10.5515 3.8722 0.7661 22 6 11.9107 3.7567 0.7198 23 6 12.5219 3.0421 -0.3012 24 6 11.7680 2.4380 -1.2849 25 6 10.3815 2.5406 -1.2598 26 8 9.6457 1.9483 -2.2248 27 6 8.3047 2.0276 -2.2316 28 8 7.6689 1.4837 -3.1149 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9563 0.7808 -0.8891 33 1 3.9557 0.7811 0.8907 34 1 3.6098 3.2369 0.8893 35 1 3.6106 3.2357 -0.8906 36 1 5.5531 3.6221 4.2591 37 1 7.8679 3.9348 0.6080 38 1 10.0827 4.4302 1.5632 39 1 12.5148 4.2247 1.4829 40 1 13.5984 2.9592 -0.3258 41 1 12.2544 1.8847 -2.0748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132451422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:39 Heat of formation + Delta-G solvation = -140.548370 kcal Electronic energy + Delta-G solvation = -30179.203220 eV Core-core repulsion = 25797.614344 eV Total energy + Delta-G solvation = -4381.588876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.88936 -41.71443 -40.76276 -39.86242 -38.25880 -37.76302 -37.02166 -35.68718 -34.28020 -32.78712 -31.71872 -30.89524 -28.80322 -27.23604 -26.39321 -25.52012 -24.96861 -23.74052 -22.08794 -21.62308 -20.42982 -19.87407 -18.93310 -18.64719 -18.27348 -17.87942 -17.83767 -17.73868 -17.38561 -16.87690 -16.34186 -16.16993 -15.78751 -15.71423 -15.38848 -15.21539 -14.74859 -14.59004 -14.50854 -14.46501 -14.31727 -14.07097 -13.95939 -13.62065 -13.22781 -13.07619 -12.96956 -12.77292 -12.70643 -12.34713 -12.17973 -11.91270 -11.83321 -11.70799 -11.47851 -11.44324 -11.27076 -10.65867 -9.94715 -9.75939 -9.36087 -8.57678 -6.18731 -0.95508 0.09870 0.63979 0.99951 1.11209 1.17597 1.30281 1.39374 1.41874 1.55968 2.10042 2.11400 2.40586 2.74355 2.89499 3.08205 3.45994 3.54230 3.65921 3.77411 3.91397 3.98261 4.14596 4.25675 4.27326 4.29356 4.31335 4.35210 4.53060 4.59409 4.64115 4.68669 4.74463 4.80415 5.00860 5.16822 5.20614 5.25160 5.35998 5.44406 5.72064 5.91232 6.09511 6.12277 6.30882 6.56341 6.81948 7.23726 7.60605 8.49967 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.003741 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.769958 B = 7482.767338 C = 8883.438463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.476 3.524 4 O -0.538 6.538 5 C -0.118 4.118 6 C 0.115 3.885 7 N -0.458 5.458 8 C -0.362 4.362 9 H 0.108 0.892 10 C 0.060 3.940 11 N -0.864 5.864 12 Si 0.899 3.101 13 H -0.273 1.273 14 H -0.271 1.271 15 H -0.273 1.273 16 C 0.533 3.467 17 O -0.606 6.606 18 C -0.286 4.286 19 C 0.077 3.923 20 C -0.181 4.181 21 C -0.044 4.044 22 C -0.136 4.136 23 C -0.036 4.036 24 C -0.145 4.145 25 C 0.122 3.878 26 O -0.272 6.272 27 C 0.524 3.476 28 O -0.492 6.492 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.286 0.714 37 H 0.180 0.820 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.184 0.816 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.202 -1.021 1.711 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.320 3.680 4 O -0.428 6.428 5 C -0.156 4.156 6 C -0.009 4.009 7 N -0.178 5.178 8 C -0.489 4.489 9 H 0.125 0.875 10 C -0.149 4.149 11 N -0.498 5.498 12 Si 0.727 3.273 13 H -0.200 1.200 14 H -0.197 1.197 15 H -0.198 1.198 16 C 0.324 3.676 17 O -0.491 6.491 18 C -0.291 4.291 19 C 0.057 3.943 20 C -0.182 4.182 21 C -0.062 4.062 22 C -0.154 4.154 23 C -0.054 4.054 24 C -0.164 4.164 25 C 0.078 3.922 26 O -0.184 6.184 27 C 0.373 3.627 28 O -0.381 6.381 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.197 0.803 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.201 0.799 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.462 -0.982 0.867 9.553 hybrid contribution -1.656 0.620 -0.071 1.770 sum 7.806 -0.362 0.796 7.855 Atomic orbital electron populations 1.23629 0.74429 1.06046 1.02634 1.86509 1.25416 1.32044 1.83610 1.23654 0.91821 0.81484 0.71046 1.90632 1.67810 1.37347 1.46992 1.21616 0.87438 0.99508 1.07086 1.21358 0.81952 0.95355 1.02187 1.43493 1.04249 1.64586 1.05431 1.19109 1.08140 1.34789 0.86816 0.87477 1.25454 0.97744 0.97183 0.94481 1.69685 1.41420 1.40234 0.98478 0.86573 0.80305 0.81668 0.78792 1.19985 1.19662 1.19808 1.17765 0.86554 0.79710 0.83545 1.90677 1.70312 1.55184 1.32974 1.21809 0.94766 1.11757 1.00754 1.23286 0.92107 0.86782 0.92094 1.18472 0.93376 1.06458 0.99863 1.21469 0.94816 0.94656 0.95216 1.21413 0.93826 0.99963 1.00198 1.21794 1.02211 0.91051 0.90307 1.21004 0.87731 1.04412 1.03219 1.19893 0.92098 0.93544 0.86677 1.83575 1.21108 1.65555 1.48113 1.20202 0.78743 0.79008 0.84731 1.90905 1.61342 1.46828 1.39000 0.84370 0.91845 0.91916 0.87308 0.85679 0.91064 0.91324 0.90319 0.80332 0.82802 0.80982 0.79859 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.55 113.37 1.20 1.77 16 2 O -0.36 -11.29 10.57 -51.41 -0.54 -11.83 16 3 C 0.48 17.98 7.96 71.24 0.57 18.54 16 4 O -0.54 -22.87 15.73 21.96 0.35 -22.53 16 5 C -0.12 -4.69 6.13 29.85 0.18 -4.50 16 6 C 0.11 5.30 3.58 86.38 0.31 5.61 16 7 N -0.46 -22.04 2.20 -639.56 -1.41 -23.45 16 8 C -0.36 -17.08 7.06 84.11 0.59 -16.49 16 9 H 0.11 5.13 5.96 -2.91 -0.02 5.12 16 10 C 0.06 2.84 5.30 84.96 0.45 3.29 16 11 N -0.86 -41.59 13.95 21.68 0.30 -41.29 16 12 Si 0.90 39.91 25.03 68.60 1.72 41.63 16 13 H -0.27 -12.42 6.66 99.48 0.66 -11.76 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 16 C 0.53 27.00 7.22 86.58 0.63 27.62 16 17 O -0.61 -34.41 15.79 9.86 0.16 -34.26 16 18 C -0.29 -12.73 5.61 -18.64 -0.10 -12.84 16 19 C 0.08 2.81 7.45 23.20 0.17 2.98 16 20 C -0.18 -5.25 5.74 -21.31 -0.12 -5.38 16 21 C -0.04 -0.90 9.72 22.37 0.22 -0.68 16 22 C -0.14 -1.79 9.97 22.00 0.22 -1.57 16 23 C -0.04 -0.43 10.02 22.32 0.22 -0.20 16 24 C -0.15 -2.73 9.98 22.38 0.22 -2.51 16 25 C 0.12 3.52 6.75 23.06 0.16 3.68 16 26 O -0.27 -9.98 9.80 13.49 0.13 -9.85 16 27 C 0.52 23.50 8.11 70.06 0.57 24.07 16 28 O -0.49 -25.52 16.88 24.48 0.41 -25.11 16 29 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 33 H 0.13 4.72 8.14 -2.39 -0.02 4.70 16 34 H 0.07 3.36 3.04 -2.38 -0.01 3.36 16 35 H 0.07 3.36 7.29 -2.39 -0.02 3.35 16 36 H 0.29 12.94 8.31 -92.71 -0.77 12.16 16 37 H 0.18 6.67 5.76 -2.91 -0.02 6.65 16 38 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -74.39 355.27 7.65 -66.74 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.06 Total: 16.54 kcal Atomic # 6 Polarization: 37.93 SS G_CDS: 5.48 Total: 43.40 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -1.11 Total: -64.74 kcal Atomic # 8 Polarization: -104.07 SS G_CDS: 0.50 Total: -103.57 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.72 Total: 41.63 kcal Total: -74.39 7.65 -66.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132451422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.808 kcal (2) G-P(sol) polarization free energy of solvation -74.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds