Wall clock time and date at job start Wed Apr 1 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48505 * 109.47015 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.47035 * 29.99904 * 3 2 1 6 6 H 1.48498 * 109.47286 * 150.00067 * 3 2 1 7 7 C 1.38649 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00538 * 359.97438 * 7 2 1 9 9 O 1.34841 * 119.99993 * 180.02562 * 7 2 1 10 10 C 1.35757 * 116.99890 * 185.05310 * 9 7 2 11 11 C 1.38877 * 120.06582 * 354.46530 * 10 9 7 12 12 C 1.38108 * 119.92618 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06483 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.92733 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46869 * 90.00119 * 14 13 12 16 16 O 1.21278 * 120.00044 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99917 * 180.02562 * 15 14 13 18 18 C 1.47305 * 135.91862 * 359.62681 * 17 15 14 19 19 C 1.52521 * 87.56498 * 153.99773 * 18 17 15 20 20 C 1.47296 * 135.91862 * 180.02562 * 17 15 14 21 21 N 1.46056 * 117.08557 * 268.02766 * 19 18 17 22 22 C 1.34958 * 105.98681 * 228.93809 * 21 19 18 23 23 O 1.21538 * 123.80475 * 180.02562 * 22 21 19 24 24 N 1.33999 * 112.40227 * 0.02562 * 22 21 19 25 25 C 1.35184 * 111.58494 * 359.97438 * 24 22 21 26 26 O 1.21235 * 127.46571 * 179.97438 * 25 24 22 27 27 C 1.38300 * 120.14489 * 0.25288 * 13 12 11 28 28 C 1.38104 * 120.06229 * 359.45232 * 27 13 12 29 29 H 0.97001 * 120.00492 * 359.97438 * 1 2 3 30 30 H 1.07991 * 120.04019 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.96551 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.47073 * 330.00814 * 14 13 12 33 33 H 1.08993 * 109.47460 * 210.00590 * 14 13 12 34 34 H 1.08993 * 113.52000 * 268.64994 * 18 17 15 35 35 H 1.09005 * 113.51640 * 39.25842 * 18 17 15 36 36 H 1.08999 * 113.51923 * 320.75052 * 20 17 15 37 37 H 1.09003 * 113.51943 * 91.28473 * 20 17 15 38 38 H 0.96999 * 127.01141 * 48.91439 * 21 19 18 39 39 H 0.96990 * 124.20651 * 180.02562 * 24 22 21 40 40 H 1.07994 * 119.96551 * 179.70291 * 27 13 12 41 41 H 1.08006 * 120.03211 * 180.27264 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0087 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9735 -2.4055 -0.1071 11 6 3.2235 -3.5743 -0.0952 12 6 3.8535 -4.7985 -0.2038 13 6 5.2299 -4.8611 -0.3238 14 6 5.9142 -6.1986 -0.4416 15 6 6.0219 -6.5815 -1.8952 16 8 5.5862 -5.8410 -2.7512 17 7 6.6022 -7.7468 -2.2439 18 6 7.2341 -8.8696 -1.5298 19 6 6.8555 -9.7516 -2.7151 20 6 6.8880 -8.4506 -3.5059 21 7 5.5740 -10.4485 -2.6430 22 6 5.8315 -11.7341 -2.9628 23 8 4.9835 -12.6038 -3.0030 24 7 7.1276 -11.9439 -3.2310 25 6 7.8502 -10.8075 -3.1126 26 8 9.0418 -10.6697 -3.2881 27 6 5.9800 -3.6992 -0.3303 28 6 5.3553 -2.4718 -0.2281 29 1 -0.4851 0.8400 0.0004 30 1 2.1488 -3.5260 -0.0002 31 1 3.2708 -5.7077 -0.1950 32 1 5.3334 -6.9520 0.0905 33 1 6.9120 -6.1357 -0.0075 34 1 8.3100 -8.7527 -1.4007 35 1 6.7240 -9.1391 -0.6049 36 1 6.0874 -8.3681 -4.2409 37 1 7.8683 -8.2174 -3.9216 38 1 4.7133 -10.0656 -2.4120 39 1 7.5006 -12.8039 -3.4798 40 1 7.0550 -3.7518 -0.4193 41 1 5.9413 -1.5646 -0.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180852355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:02 Heat of formation + Delta-G solvation = -25.629351 kcal Electronic energy + Delta-G solvation = -28599.917201 eV Core-core repulsion = 24255.604339 eV Total energy + Delta-G solvation = -4344.312863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.35775 -40.44635 -39.37821 -39.11052 -38.16584 -36.64840 -36.31660 -33.76248 -32.55193 -31.79798 -30.27828 -29.78588 -27.30334 -26.61974 -25.31273 -24.51639 -23.36744 -22.13799 -21.57458 -20.71160 -19.55472 -18.68985 -17.91153 -17.54379 -17.43649 -17.24911 -17.15616 -16.88604 -16.28427 -15.93758 -15.54055 -14.87210 -14.81633 -14.68351 -14.30754 -14.09703 -13.83908 -13.75544 -13.65384 -13.56434 -13.41549 -12.71947 -12.53136 -12.21683 -12.05328 -11.75991 -11.68412 -11.33119 -11.09228 -11.02140 -10.98549 -10.77835 -10.69968 -10.16832 -10.14635 -9.96105 -9.40072 -9.26399 -8.87199 -8.26650 -7.34234 -6.42446 -4.09001 0.79407 1.73146 1.96572 2.13133 2.28697 2.35747 2.40482 2.57725 3.21637 3.25827 3.31278 3.38692 3.39864 3.75191 4.23160 4.24131 4.46798 4.54946 4.68600 4.73145 4.83216 4.94691 4.98575 5.03025 5.09776 5.16177 5.37171 5.41446 5.50779 5.60974 5.71614 6.10665 6.10942 6.24472 6.29902 6.53413 6.68727 6.76432 6.99069 7.17904 7.22383 7.27715 7.49659 7.59338 7.78980 7.97808 8.02744 8.92711 9.54736 10.65100 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.001920 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.586016 B =14577.247532 C =15185.381911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.216 6.216 10 C 0.163 3.837 11 C -0.220 4.220 12 C -0.056 4.056 13 C -0.168 4.168 14 C -0.072 4.072 15 C 0.543 3.457 16 O -0.505 6.505 17 N -0.654 5.654 18 C 0.120 3.880 19 C 0.063 3.937 20 C 0.121 3.879 21 N -0.695 5.695 22 C 0.709 3.291 23 O -0.533 6.533 24 N -0.679 5.679 25 C 0.551 3.449 26 O -0.452 6.452 27 C -0.060 4.060 28 C -0.191 4.191 29 H 0.280 0.720 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.447 0.553 39 H 0.435 0.565 40 H 0.110 0.890 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.280 -23.006 -3.014 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.111 3.889 11 C -0.239 4.239 12 C -0.075 4.075 13 C -0.169 4.169 14 C -0.112 4.112 15 C 0.334 3.666 16 O -0.377 6.377 17 N -0.394 5.394 18 C -0.005 4.005 19 C -0.031 4.031 20 C -0.004 4.004 21 N -0.360 5.360 22 C 0.408 3.592 23 O -0.405 6.405 24 N -0.351 5.351 25 C 0.335 3.665 26 O -0.319 6.319 27 C -0.079 4.079 28 C -0.210 4.210 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.293 0.707 39 H 0.278 0.722 40 H 0.128 0.872 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.933 -22.279 -3.488 28.200 hybrid contribution -0.082 0.350 -0.097 0.372 sum 16.851 -21.929 -3.585 27.887 Atomic orbital electron populations 1.69641 1.05569 1.28515 1.47930 1.24473 0.95041 0.98861 0.95655 0.86176 0.80303 0.81393 0.78998 1.19858 1.20779 1.18357 1.20774 0.76861 0.96651 1.52197 0.87595 1.83575 1.22657 1.25799 1.80100 1.19132 0.91718 0.85496 0.92556 1.21226 1.01089 0.91781 1.09771 1.20555 0.93166 0.96755 0.96991 1.18670 0.93603 0.92379 1.12264 1.20371 1.02490 0.97061 0.91259 1.20810 0.76202 0.77313 0.92315 1.90802 1.46217 1.48365 1.52320 1.49875 1.60136 1.20406 1.08983 1.23081 1.00773 0.81423 0.95251 1.21893 0.85180 0.93470 1.02539 1.22947 1.04107 0.83430 0.89877 1.45040 1.09792 1.07657 1.73462 1.15927 0.82196 0.83608 0.77473 1.91101 1.47394 1.45669 1.56353 1.44442 1.09752 1.14500 1.66363 1.19924 0.87505 0.83666 0.75454 1.90890 1.12339 1.82508 1.46184 1.20401 0.98149 0.91356 0.97954 1.20156 0.91967 0.97766 1.11144 0.91032 0.84910 0.87524 0.88762 0.88659 0.86901 0.88146 0.88427 0.87220 0.70717 0.72170 0.87155 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.96 55.48 0.77 -24.66 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.75 28.62 -169.99 -4.86 16.89 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -11.01 9.95 30.88 0.31 -10.71 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 9 O -0.22 -5.74 8.59 0.00 0.00 -5.74 16 10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.22 -4.74 9.17 -39.39 -0.36 -5.10 16 12 C -0.06 -1.00 9.69 -39.61 -0.38 -1.38 16 13 C -0.17 -2.65 4.38 -104.58 -0.46 -3.11 16 14 C -0.07 -0.77 5.65 -29.03 -0.16 -0.93 16 15 C 0.54 6.46 8.07 -10.98 -0.09 6.37 16 16 O -0.51 -8.70 16.81 5.56 0.09 -8.60 16 17 N -0.65 -5.01 3.69 -185.32 -0.68 -5.69 16 18 C 0.12 0.47 8.01 -7.65 -0.06 0.41 16 19 C 0.06 0.29 1.74 -135.26 -0.23 0.05 16 20 C 0.12 0.73 8.18 -7.78 -0.06 0.67 16 21 N -0.69 -3.45 6.40 -55.65 -0.36 -3.81 16 22 C 0.71 4.70 9.01 -87.45 -0.79 3.91 16 23 O -0.53 -5.63 18.04 5.33 0.10 -5.53 16 24 N -0.68 -3.02 5.73 -15.93 -0.09 -3.11 16 25 C 0.55 2.77 8.12 -10.94 -0.09 2.68 16 26 O -0.45 -3.31 18.02 5.60 0.10 -3.21 16 27 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 28 C -0.19 -3.80 9.99 -39.40 -0.39 -4.19 16 29 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.45 2.02 8.96 -40.82 -0.37 1.66 16 39 H 0.44 1.14 8.96 -40.82 -0.37 0.77 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.12 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -36.44 365.19 -7.19 -43.64 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.25 Total: 1.84 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.52 Total: -7.51 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.36 Total: -37.27 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.29 Total: -23.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.44 -7.19 -43.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180852355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.007 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds