Wall clock time and date at job start Wed Apr 1 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48505 * 109.47015 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.47035 * 29.99904 * 3 2 1 6 6 H 1.48498 * 109.47286 * 150.00067 * 3 2 1 7 7 C 1.38649 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00538 * 359.97438 * 7 2 1 9 9 O 1.34841 * 119.99993 * 180.02562 * 7 2 1 10 10 C 1.35757 * 116.99890 * 185.05310 * 9 7 2 11 11 C 1.38877 * 120.06582 * 354.46530 * 10 9 7 12 12 C 1.38108 * 119.92618 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06483 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.92733 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46869 * 90.00119 * 14 13 12 16 16 O 1.21278 * 120.00044 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99917 * 180.02562 * 15 14 13 18 18 C 1.47305 * 135.91862 * 359.62681 * 17 15 14 19 19 C 1.52521 * 87.56498 * 153.99773 * 18 17 15 20 20 C 1.47296 * 135.91862 * 180.02562 * 17 15 14 21 21 N 1.46056 * 117.08557 * 268.02766 * 19 18 17 22 22 C 1.34958 * 105.98681 * 228.93809 * 21 19 18 23 23 O 1.21538 * 123.80475 * 180.02562 * 22 21 19 24 24 N 1.33999 * 112.40227 * 0.02562 * 22 21 19 25 25 C 1.35184 * 111.58494 * 359.97438 * 24 22 21 26 26 O 1.21235 * 127.46571 * 179.97438 * 25 24 22 27 27 C 1.38300 * 120.14489 * 0.25288 * 13 12 11 28 28 C 1.38104 * 120.06229 * 359.45232 * 27 13 12 29 29 H 0.97001 * 120.00492 * 359.97438 * 1 2 3 30 30 H 1.07991 * 120.04019 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.96551 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.47073 * 330.00814 * 14 13 12 33 33 H 1.08993 * 109.47460 * 210.00590 * 14 13 12 34 34 H 1.08993 * 113.52000 * 268.64994 * 18 17 15 35 35 H 1.09005 * 113.51640 * 39.25842 * 18 17 15 36 36 H 1.08999 * 113.51923 * 320.75052 * 20 17 15 37 37 H 1.09003 * 113.51943 * 91.28473 * 20 17 15 38 38 H 0.96999 * 127.01141 * 48.91439 * 21 19 18 39 39 H 0.96990 * 124.20651 * 180.02562 * 24 22 21 40 40 H 1.07994 * 119.96551 * 179.70291 * 27 13 12 41 41 H 1.08006 * 120.03211 * 180.27264 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0087 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9735 -2.4055 -0.1071 11 6 3.2235 -3.5743 -0.0952 12 6 3.8535 -4.7985 -0.2038 13 6 5.2299 -4.8611 -0.3238 14 6 5.9142 -6.1986 -0.4416 15 6 6.0219 -6.5815 -1.8952 16 8 5.5862 -5.8410 -2.7512 17 7 6.6022 -7.7468 -2.2439 18 6 7.2341 -8.8696 -1.5298 19 6 6.8555 -9.7516 -2.7151 20 6 6.8880 -8.4506 -3.5059 21 7 5.5740 -10.4485 -2.6430 22 6 5.8315 -11.7341 -2.9628 23 8 4.9835 -12.6038 -3.0030 24 7 7.1276 -11.9439 -3.2310 25 6 7.8502 -10.8075 -3.1126 26 8 9.0418 -10.6697 -3.2881 27 6 5.9800 -3.6992 -0.3303 28 6 5.3553 -2.4718 -0.2281 29 1 -0.4851 0.8400 0.0004 30 1 2.1488 -3.5260 -0.0002 31 1 3.2708 -5.7077 -0.1950 32 1 5.3334 -6.9520 0.0905 33 1 6.9120 -6.1357 -0.0075 34 1 8.3100 -8.7527 -1.4007 35 1 6.7240 -9.1391 -0.6049 36 1 6.0874 -8.3681 -4.2409 37 1 7.8683 -8.2174 -3.9216 38 1 4.7133 -10.0656 -2.4120 39 1 7.5006 -12.8039 -3.4798 40 1 7.0550 -3.7518 -0.4193 41 1 5.9413 -1.5646 -0.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180852355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:01 Heat of formation + Delta-G solvation = -56.045118 kcal Electronic energy + Delta-G solvation = -28601.236128 eV Core-core repulsion = 24255.604339 eV Total energy + Delta-G solvation = -4345.631789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.83871 -41.25322 -40.73469 -39.84288 -39.10509 -38.11254 -36.95188 -34.52326 -34.25149 -33.08240 -31.80143 -30.62147 -28.35004 -27.40571 -26.72900 -25.42220 -23.84911 -23.70430 -22.43996 -21.79914 -20.29720 -19.80578 -19.18586 -19.08079 -18.22159 -17.91522 -17.66054 -17.43529 -16.86675 -16.80559 -16.70936 -16.25391 -15.93593 -15.69777 -15.62234 -15.36676 -15.16274 -14.81598 -14.59234 -14.36043 -14.29682 -14.11039 -14.03920 -13.97992 -13.04966 -12.82259 -12.55200 -12.47465 -12.38765 -12.33443 -12.27272 -11.93087 -11.67005 -11.53095 -11.27640 -10.97973 -10.83570 -10.61909 -9.92687 -9.77737 -8.98192 -8.50610 -6.23086 0.32979 0.59694 0.60221 1.29028 1.30125 1.34655 1.50885 1.55301 1.65902 1.85923 2.03918 2.27488 2.73486 2.84883 2.96455 3.03997 3.16734 3.31028 3.73440 3.91195 4.02788 4.05987 4.17393 4.33107 4.40609 4.46763 4.47729 4.57968 4.65786 4.70746 4.75489 4.82744 4.99408 5.03156 5.26343 5.37902 5.57303 5.66341 5.74143 5.77790 5.80235 5.91624 6.25261 6.27675 6.53897 6.83726 7.01695 7.14243 7.58702 8.61108 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.001920 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.586016 B =14577.247532 C =15185.381911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.240 4.240 12 C -0.062 4.062 13 C -0.140 4.140 14 C -0.071 4.071 15 C 0.546 3.454 16 O -0.573 6.573 17 N -0.651 5.651 18 C 0.126 3.874 19 C 0.072 3.928 20 C 0.115 3.885 21 N -0.686 5.686 22 C 0.713 3.287 23 O -0.574 6.574 24 N -0.668 5.668 25 C 0.563 3.437 26 O -0.469 6.469 27 C -0.058 4.058 28 C -0.195 4.195 29 H 0.285 0.715 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.450 0.550 39 H 0.444 0.556 40 H 0.155 0.845 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.126 -25.201 -2.467 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.259 4.259 12 C -0.081 4.081 13 C -0.141 4.141 14 C -0.110 4.110 15 C 0.337 3.663 16 O -0.450 6.450 17 N -0.388 5.388 18 C 0.003 3.997 19 C -0.022 4.022 20 C -0.009 4.009 21 N -0.350 5.350 22 C 0.412 3.588 23 O -0.450 6.450 24 N -0.340 5.340 25 C 0.348 3.652 26 O -0.338 6.338 27 C -0.076 4.076 28 C -0.214 4.214 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.297 0.703 39 H 0.289 0.711 40 H 0.172 0.828 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 20.851 -24.561 -2.926 32.350 hybrid contribution -1.021 0.598 -0.340 1.231 sum 19.830 -23.963 -3.266 31.275 Atomic orbital electron populations 1.69727 1.06884 1.29585 1.50267 1.25304 0.95934 1.02222 0.95586 0.85200 0.78842 0.77353 0.79193 1.19316 1.18994 1.18598 1.20706 0.78165 0.96085 1.52576 0.90280 1.83514 1.21187 1.27553 1.83192 1.19711 0.93320 0.85098 0.95020 1.21259 1.00059 0.93412 1.11156 1.20921 0.94747 0.96109 0.96273 1.19302 0.92810 0.95123 1.06891 1.20503 1.04705 0.94490 0.91304 1.20786 0.75770 0.77691 0.92018 1.90802 1.49434 1.50889 1.53917 1.49703 1.58748 1.19658 1.10644 1.23402 1.02195 0.78657 0.95495 1.21762 0.84692 0.92785 1.02965 1.23108 1.04509 0.83770 0.89485 1.45024 1.10229 1.07105 1.72692 1.15964 0.82258 0.83574 0.76977 1.91083 1.48656 1.46996 1.58220 1.44313 1.08951 1.15015 1.65686 1.19776 0.87071 0.83580 0.74812 1.90903 1.13129 1.82690 1.47069 1.20962 1.00436 0.90202 0.95987 1.20517 0.90548 0.99921 1.10407 0.90580 0.87679 0.84720 0.85276 0.84570 0.84535 0.85482 0.89386 0.85909 0.70337 0.71135 0.82781 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.22 13.96 21.61 0.30 -55.92 16 2 C 0.01 0.45 5.49 84.83 0.47 0.92 16 3 Si 0.97 46.43 28.62 68.60 1.96 48.39 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.40 -24.16 9.95 67.92 0.68 -23.48 16 8 H 0.08 5.02 5.44 -2.91 -0.02 5.01 16 9 O -0.25 -13.81 8.59 -22.93 -0.20 -14.01 16 10 C 0.12 5.66 6.65 22.57 0.15 5.81 16 11 C -0.24 -10.81 9.17 22.39 0.21 -10.61 16 12 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 13 C -0.14 -3.93 4.38 -19.83 -0.09 -4.01 16 14 C -0.07 -1.10 5.65 29.10 0.16 -0.93 16 15 C 0.55 10.78 8.07 87.66 0.71 11.49 16 16 O -0.57 -18.60 16.81 -3.02 -0.05 -18.65 16 17 N -0.65 -7.11 3.69 -858.63 -3.17 -10.28 16 18 C 0.13 0.30 8.01 83.60 0.67 0.97 16 19 C 0.07 0.38 1.74 2.90 0.01 0.39 16 20 C 0.12 1.03 8.18 83.53 0.68 1.71 16 21 N -0.69 -4.87 6.40 -448.16 -2.87 -7.74 16 22 C 0.71 7.96 9.01 179.24 1.61 9.58 16 23 O -0.57 -11.49 18.04 -3.83 -0.07 -11.56 16 24 N -0.67 -4.28 5.73 -441.20 -2.53 -6.81 16 25 C 0.56 3.81 8.12 87.50 0.71 4.52 16 26 O -0.47 -5.33 18.02 -2.89 -0.05 -5.38 16 27 C -0.06 -1.75 9.69 22.25 0.22 -1.53 16 28 C -0.19 -7.60 9.99 22.39 0.22 -7.38 16 29 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.11 5.24 5.64 -2.92 -0.02 5.22 16 31 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 32 H 0.13 1.22 8.08 -2.38 -0.02 1.21 16 33 H 0.14 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.13 -0.24 8.14 -2.38 -0.02 -0.26 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.45 2.89 8.96 -92.71 -0.83 2.05 16 39 H 0.44 1.37 8.96 -92.72 -0.83 0.54 16 40 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -87.05 365.19 -0.59 -87.64 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -0.53 Total: 8.81 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 6.62 Total: -14.48 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -8.27 Total: -80.75 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.37 Total: -49.61 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.96 Total: 48.39 kcal Total: -87.05 -0.59 -87.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180852355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.594 kcal (2) G-P(sol) polarization free energy of solvation -87.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds