Wall clock time and date at job start Wed Apr 1 2020 04:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35949 * 117.00416 * 2 1 4 4 N 1.30347 * 121.63695 * 0.26778 * 3 2 1 5 5 S 1.69584 * 107.17133 * 180.22753 * 4 3 2 6 6 C 1.72030 * 95.78119 * 359.72801 * 5 4 3 7 7 C 1.35061 * 105.59902 * 0.02562 * 6 5 4 8 8 C 1.50703 * 122.63593 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47107 * 260.02065 * 8 7 6 10 10 C 1.46902 * 111.00255 * 293.95458 * 9 8 7 11 11 C 1.46901 * 111.00103 * 169.99758 * 9 8 7 12 12 C 1.52995 * 109.47356 * 189.99936 * 11 9 8 13 13 N 1.46500 * 109.47394 * 180.02562 * 12 11 9 14 14 C 1.34774 * 120.00326 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00194 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.47168 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00148 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00093 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00193 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00009 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47565 * 59.99805 * 22 20 18 24 24 H 1.48497 * 109.47158 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46951 * 300.00027 * 22 20 18 26 26 H 1.09003 * 109.47160 * 59.99723 * 1 2 3 27 27 H 1.08995 * 109.47166 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47115 * 299.99908 * 1 2 3 29 29 H 1.08002 * 127.20048 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47152 * 140.02152 * 8 7 6 31 31 H 1.09001 * 109.46980 * 20.02253 * 8 7 6 32 32 H 1.09005 * 109.46528 * 59.99744 * 10 9 8 33 33 H 1.09000 * 109.46785 * 179.97438 * 10 9 8 34 34 H 1.08997 * 109.47044 * 300.00388 * 10 9 8 35 35 H 1.08998 * 109.47407 * 310.00536 * 11 9 8 36 36 H 1.09007 * 109.46608 * 69.99971 * 11 9 8 37 37 H 1.08998 * 109.47352 * 300.00633 * 12 11 9 38 38 H 1.09008 * 109.46769 * 60.00179 * 12 11 9 39 39 H 0.97002 * 119.99935 * 359.97438 * 13 12 11 40 40 H 1.08998 * 109.47299 * 299.99835 * 16 14 13 41 41 H 1.09006 * 109.46516 * 59.99791 * 16 14 13 42 42 H 0.97001 * 119.99888 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 7 1.3680 2.3243 0.0052 5 16 2.4910 3.5950 -0.0032 6 6 3.8882 2.5915 -0.0057 7 6 3.4243 1.3230 -0.0005 8 6 4.3371 0.1239 -0.0001 9 7 4.4381 -0.4151 -1.3629 10 6 3.1487 -0.9574 -1.8116 11 6 5.4956 -1.4310 -1.4503 12 6 5.7412 -1.7867 -2.9179 13 7 6.7954 -2.8003 -3.0049 14 6 7.1824 -3.2685 -4.2080 15 8 6.6576 -2.8511 -5.2186 16 6 8.2672 -4.3107 -4.2976 17 16 8.5576 -4.7316 -6.0338 18 6 9.8337 -5.9324 -5.8482 19 1 10.1916 -6.1922 -4.8630 20 6 10.3790 -6.5444 -6.9683 21 7 9.9432 -6.2274 -8.1693 22 14 11.7313 -7.8179 -6.7715 23 1 11.2295 -8.9504 -5.9526 24 1 12.1401 -8.3166 -8.1092 25 1 12.9001 -7.1985 -6.0964 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.9204 2.9093 -0.0104 30 1 3.9327 -0.6403 0.6637 31 1 5.3266 0.4206 0.3476 32 1 2.3991 -0.1661 -1.8033 33 1 3.2518 -1.3493 -2.8235 34 1 2.8385 -1.7587 -1.1410 35 1 6.4137 -1.0384 -1.0130 36 1 5.1873 -2.3240 -0.9066 37 1 4.8232 -2.1793 -3.3551 38 1 6.0495 -0.8936 -3.4615 39 1 7.2154 -3.1339 -2.1967 40 1 9.1852 -3.9182 -3.8601 41 1 7.9587 -5.2038 -3.7542 42 1 10.3240 -6.6553 -8.9520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266258295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:07 Heat of formation + Delta-G solvation = -16.193029 kcal Electronic energy + Delta-G solvation = -24381.874262 eV Core-core repulsion = 20616.167412 eV Total energy + Delta-G solvation = -3765.706851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92881 -39.22629 -38.01637 -36.95253 -34.45839 -32.41864 -32.22157 -30.20399 -28.54191 -27.94947 -27.74118 -25.50796 -24.89448 -23.23155 -21.43179 -20.51437 -20.30807 -18.56708 -17.83602 -17.55072 -17.11161 -16.35864 -16.07118 -15.87534 -15.53126 -15.26242 -14.97865 -14.79543 -14.56708 -14.01030 -13.90043 -13.76960 -13.62234 -13.07424 -13.05321 -12.58943 -12.48758 -12.26987 -12.19998 -12.01053 -11.81172 -11.45940 -11.33371 -11.22276 -11.03694 -11.03102 -11.01756 -10.76089 -10.07273 -9.81535 -9.39828 -9.05344 -8.84840 -8.82074 -8.57231 -8.22476 -6.48742 -6.20407 -3.91016 0.27524 0.98321 1.29371 1.95221 2.73540 2.99683 3.12901 3.24080 3.27147 3.30125 3.57499 4.00635 4.19936 4.21544 4.49382 4.61239 4.72285 4.75435 4.81705 4.86220 4.96944 5.12744 5.14509 5.17315 5.21800 5.27001 5.31704 5.38682 5.47504 5.62271 5.73735 5.77005 5.87178 5.92856 5.98356 6.15058 6.54674 6.62235 6.64910 6.75014 7.60178 7.72328 8.36011 8.64041 9.24614 10.86939 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.001564 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.850268 B =17895.842132 C =18121.319003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.290 6.290 3 C 0.318 3.682 4 N -0.533 5.533 5 S 0.287 5.713 6 C -0.169 4.169 7 C -0.163 4.163 8 C 0.128 3.872 9 N -0.533 5.533 10 C 0.020 3.980 11 C 0.046 3.954 12 C 0.124 3.876 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.192 0.808 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 17.205 23.267 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.196 6.196 3 C 0.103 3.897 4 N -0.372 5.372 5 S 0.437 5.563 6 C -0.317 4.317 7 C -0.181 4.181 8 C -0.002 4.002 9 N -0.258 5.258 10 C -0.127 4.127 11 C -0.082 4.082 12 C 0.000 4.000 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.210 0.790 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.943 19.614 21.056 33.912 hybrid contribution 2.242 -3.505 2.209 4.711 sum -15.700 16.110 23.265 32.362 Atomic orbital electron populations 1.22986 0.76900 1.03695 1.02543 1.86407 1.22829 1.22463 1.87919 1.19998 0.89843 0.85246 0.94589 1.76541 1.26439 1.01257 1.32963 1.84014 0.90244 1.12795 1.69276 1.26389 1.06631 0.96510 1.02173 1.19037 0.91176 0.96742 1.11141 1.20532 0.97743 0.92262 0.89684 1.61912 1.06307 1.34880 1.22678 1.22620 0.90280 0.99299 1.00528 1.22256 0.95440 0.93841 0.96693 1.21188 0.91277 0.92112 0.95436 1.45916 1.40805 1.43836 1.08906 1.20283 0.83170 0.82058 0.82677 1.90709 1.55196 1.58252 1.34871 1.23528 0.99006 0.99422 1.08416 1.85409 1.49147 1.52343 0.96438 1.22830 1.23363 1.26587 0.95679 0.90978 1.24993 0.97164 0.96972 0.94459 1.70011 1.41172 1.41326 0.97764 0.86224 0.81042 0.80705 0.77519 1.19962 1.20814 1.19950 0.92048 0.87985 0.92235 0.79045 0.93013 0.89308 0.90998 0.91054 0.94876 0.89982 0.93946 0.91605 0.90736 0.76968 0.89199 0.89256 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.47 101.05 1.06 1.27 16 2 O -0.29 -2.48 7.31 -19.58 -0.14 -2.62 16 3 C 0.32 2.91 6.21 -18.17 -0.11 2.80 16 4 N -0.53 -5.12 11.14 28.92 0.32 -4.79 16 5 S 0.29 2.03 23.71 -107.50 -2.55 -0.52 16 6 C -0.17 -1.06 11.15 29.60 0.33 -0.73 16 7 C -0.16 -1.30 5.07 -105.74 -0.54 -1.83 16 8 C 0.13 0.93 5.10 -4.98 -0.03 0.91 16 9 N -0.53 -4.74 4.75 -244.37 -1.16 -5.90 16 10 C 0.02 0.19 7.97 60.07 0.48 0.67 16 11 C 0.05 0.39 5.07 -3.83 -0.02 0.37 16 12 C 0.12 1.48 5.61 -4.04 -0.02 1.46 16 13 N -0.74 -9.77 5.56 -60.29 -0.33 -10.10 16 14 C 0.53 9.98 7.85 -10.99 -0.09 9.90 16 15 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.05 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.09 0.50 7.87 -51.93 -0.41 0.09 16 32 H 0.07 0.71 5.00 -51.93 -0.26 0.45 16 33 H 0.07 0.72 6.30 -51.93 -0.33 0.39 16 34 H 0.03 0.30 7.94 -51.93 -0.41 -0.12 16 35 H 0.08 0.59 7.93 -51.93 -0.41 0.17 16 36 H 0.04 0.34 8.12 -51.93 -0.42 -0.09 16 37 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 38 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -35.93 377.80 -8.95 -44.88 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.84 Total: -0.77 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 1.48 Total: -1.04 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.44 Total: -46.30 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.05 Total: -14.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -4.76 Total: -4.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.93 -8.95 -44.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266258295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.685 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds