Wall clock time and date at job start Wed Apr 1 2020 04:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35949 * 117.00416 * 2 1 4 4 N 1.30347 * 121.63695 * 0.26778 * 3 2 1 5 5 S 1.69584 * 107.17133 * 180.22753 * 4 3 2 6 6 C 1.72030 * 95.78119 * 359.72801 * 5 4 3 7 7 C 1.35061 * 105.59902 * 0.02562 * 6 5 4 8 8 C 1.50703 * 122.63593 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47107 * 260.02065 * 8 7 6 10 10 C 1.46902 * 111.00255 * 293.95458 * 9 8 7 11 11 C 1.46901 * 111.00103 * 169.99758 * 9 8 7 12 12 C 1.52995 * 109.47356 * 189.99936 * 11 9 8 13 13 N 1.46500 * 109.47394 * 180.02562 * 12 11 9 14 14 C 1.34774 * 120.00326 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00194 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.47168 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00148 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00093 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00193 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00009 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47565 * 59.99805 * 22 20 18 24 24 H 1.48497 * 109.47158 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46951 * 300.00027 * 22 20 18 26 26 H 1.09003 * 109.47160 * 59.99723 * 1 2 3 27 27 H 1.08995 * 109.47166 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47115 * 299.99908 * 1 2 3 29 29 H 1.08002 * 127.20048 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47152 * 140.02152 * 8 7 6 31 31 H 1.09001 * 109.46980 * 20.02253 * 8 7 6 32 32 H 1.09005 * 109.46528 * 59.99744 * 10 9 8 33 33 H 1.09000 * 109.46785 * 179.97438 * 10 9 8 34 34 H 1.08997 * 109.47044 * 300.00388 * 10 9 8 35 35 H 1.08998 * 109.47407 * 310.00536 * 11 9 8 36 36 H 1.09007 * 109.46608 * 69.99971 * 11 9 8 37 37 H 1.08998 * 109.47352 * 300.00633 * 12 11 9 38 38 H 1.09008 * 109.46769 * 60.00179 * 12 11 9 39 39 H 0.97002 * 119.99935 * 359.97438 * 13 12 11 40 40 H 1.08998 * 109.47299 * 299.99835 * 16 14 13 41 41 H 1.09006 * 109.46516 * 59.99791 * 16 14 13 42 42 H 0.97001 * 119.99888 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 7 1.3680 2.3243 0.0052 5 16 2.4910 3.5950 -0.0032 6 6 3.8882 2.5915 -0.0057 7 6 3.4243 1.3230 -0.0005 8 6 4.3371 0.1239 -0.0001 9 7 4.4381 -0.4151 -1.3629 10 6 3.1487 -0.9574 -1.8116 11 6 5.4956 -1.4310 -1.4503 12 6 5.7412 -1.7867 -2.9179 13 7 6.7954 -2.8003 -3.0049 14 6 7.1824 -3.2685 -4.2080 15 8 6.6576 -2.8511 -5.2186 16 6 8.2672 -4.3107 -4.2976 17 16 8.5576 -4.7316 -6.0338 18 6 9.8337 -5.9324 -5.8482 19 1 10.1916 -6.1922 -4.8630 20 6 10.3790 -6.5444 -6.9683 21 7 9.9432 -6.2274 -8.1693 22 14 11.7313 -7.8179 -6.7715 23 1 11.2295 -8.9504 -5.9526 24 1 12.1401 -8.3166 -8.1092 25 1 12.9001 -7.1985 -6.0964 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.9204 2.9093 -0.0104 30 1 3.9327 -0.6403 0.6637 31 1 5.3266 0.4206 0.3476 32 1 2.3991 -0.1661 -1.8033 33 1 3.2518 -1.3493 -2.8235 34 1 2.8385 -1.7587 -1.1410 35 1 6.4137 -1.0384 -1.0130 36 1 5.1873 -2.3240 -0.9066 37 1 4.8232 -2.1793 -3.3551 38 1 6.0495 -0.8936 -3.4615 39 1 7.2154 -3.1339 -2.1967 40 1 9.1852 -3.9182 -3.8601 41 1 7.9587 -5.2038 -3.7542 42 1 10.3240 -6.6553 -8.9520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266258295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:06 Heat of formation + Delta-G solvation = -45.421552 kcal Electronic energy + Delta-G solvation = -24383.141706 eV Core-core repulsion = 20616.167412 eV Total energy + Delta-G solvation = -3766.974294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50626 -40.61277 -38.74670 -37.60606 -35.65414 -34.56742 -32.92793 -31.49433 -29.39566 -28.74428 -28.38156 -27.63644 -25.66739 -23.91332 -22.22698 -21.75348 -21.02312 -19.80921 -19.13465 -18.17221 -17.89538 -17.66056 -17.19657 -16.86179 -16.83643 -16.24217 -16.08120 -16.02698 -15.67769 -15.23196 -14.86350 -14.65378 -14.45753 -14.37759 -14.22792 -13.67532 -13.53953 -13.15347 -13.04614 -12.94098 -12.85176 -12.76771 -12.65095 -12.56951 -12.16718 -12.00015 -11.88952 -11.73792 -11.62130 -11.11323 -10.98214 -10.64045 -10.25792 -10.09603 -9.43820 -9.17253 -8.65305 -8.32845 -6.11154 -0.26242 0.44894 0.74087 1.27040 1.35859 1.45321 1.48680 1.58112 1.63334 2.20871 2.23646 2.29796 3.01138 3.14904 3.36623 3.66318 3.84242 3.95568 4.07105 4.10573 4.22153 4.27579 4.31481 4.33519 4.43322 4.51012 4.53538 4.60008 4.64805 4.67502 4.84460 4.86323 4.90345 4.99426 5.11029 5.22516 5.42085 5.43379 5.97310 5.99480 6.08975 6.21269 6.53330 7.08197 7.27267 8.76097 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.001564 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.850268 B =17895.842132 C =18121.319003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.308 3.692 4 N -0.567 5.567 5 S 0.296 5.704 6 C -0.152 4.152 7 C -0.184 4.184 8 C 0.132 3.868 9 N -0.544 5.544 10 C 0.028 3.972 11 C 0.057 3.943 12 C 0.126 3.874 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.057 0.943 29 H 0.223 0.777 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.418 0.582 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 16.923 26.096 34.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.206 6.206 3 C 0.094 3.906 4 N -0.407 5.407 5 S 0.446 5.554 6 C -0.300 4.300 7 C -0.202 4.202 8 C 0.003 3.997 9 N -0.268 5.268 10 C -0.121 4.121 11 C -0.071 4.071 12 C 0.002 3.998 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.240 0.760 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.255 0.745 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.413 19.340 23.963 34.895 hybrid contribution 1.668 -3.285 1.421 3.949 sum -14.745 16.055 25.384 33.459 Atomic orbital electron populations 1.23099 0.76080 1.04955 1.02058 1.86380 1.23736 1.22573 1.87889 1.20305 0.90532 0.85266 0.94522 1.76441 1.28060 1.02104 1.34119 1.83936 0.90356 1.12073 1.68990 1.26791 1.07666 0.95595 0.99925 1.19201 0.90819 0.97670 1.12509 1.20577 0.98826 0.91874 0.88456 1.61872 1.05885 1.34953 1.24098 1.22494 0.90686 0.99047 0.99826 1.22155 0.96436 0.94585 0.93885 1.21234 0.89840 0.90699 0.98007 1.45595 1.40144 1.42837 1.07911 1.20081 0.82703 0.81769 0.83548 1.90700 1.56912 1.60012 1.36999 1.23364 1.00736 1.00943 1.02890 1.85621 1.49929 1.53201 1.04042 1.23181 1.23279 1.26525 0.96428 0.89754 1.26146 0.99878 0.99302 0.93923 1.70185 1.42925 1.42902 0.98806 0.84996 0.77547 0.77651 0.77745 1.18640 1.20508 1.18588 0.92827 0.85842 0.92408 0.76029 0.93061 0.86924 0.91805 0.92455 0.94560 0.87607 0.92649 0.93084 0.92338 0.74459 0.86922 0.87066 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.47 113.37 1.19 1.59 16 2 O -0.30 -5.03 7.31 -92.98 -0.68 -5.71 16 3 C 0.31 5.48 6.21 84.92 0.53 6.01 16 4 N -0.57 -10.82 11.14 -176.09 -1.96 -12.78 16 5 S 0.30 3.89 23.71 -56.49 -1.34 2.55 16 6 C -0.15 -1.55 11.15 67.09 0.75 -0.80 16 7 C -0.18 -2.61 5.07 -20.59 -0.10 -2.72 16 8 C 0.13 1.58 5.10 85.56 0.44 2.01 16 9 N -0.54 -8.54 4.75 -927.03 -4.41 -12.94 16 10 C 0.03 0.50 7.97 127.69 1.02 1.51 16 11 C 0.06 0.80 5.07 86.30 0.44 1.24 16 12 C 0.13 2.83 5.61 86.38 0.48 3.31 16 13 N -0.71 -17.12 5.56 -463.06 -2.57 -19.70 16 14 C 0.53 19.53 7.85 87.66 0.69 20.22 16 15 O -0.57 -26.73 15.86 -3.03 -0.05 -26.78 16 16 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 17 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 18 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 22 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16 30 H 0.05 0.63 8.06 -2.39 -0.02 0.61 16 31 H 0.11 0.79 7.87 -2.39 -0.02 0.77 16 32 H 0.06 1.26 5.00 -2.38 -0.01 1.25 16 33 H 0.06 1.17 6.30 -2.39 -0.02 1.15 16 34 H 0.04 0.61 7.94 -2.39 -0.02 0.60 16 35 H 0.11 1.03 7.93 -2.39 -0.02 1.01 16 36 H 0.06 0.67 8.12 -2.38 -0.02 0.65 16 37 H 0.05 1.33 6.47 -2.39 -0.02 1.31 16 38 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.42 6.68 8.47 -92.71 -0.79 5.90 16 40 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -81.07 377.80 -2.62 -83.69 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.26 Total: 13.36 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 6.97 Total: -1.42 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -8.65 Total: -101.28 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.73 Total: -32.49 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -2.50 Total: -7.24 kcal Total: -81.07 -2.62 -83.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266258295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.271 kcal (2) G-P(sol) polarization free energy of solvation -81.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds