Wall clock time and date at job start Wed Apr 1 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91580 * 2 1 4 4 C 1.31786 * 117.12909 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.75388 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46722 * 275.02652 * 5 4 3 7 7 C 1.46900 * 110.99888 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47407 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47269 * 305.00036 * 8 7 6 10 10 O 1.42903 * 109.46459 * 64.99929 * 8 7 6 11 11 C 1.53001 * 109.47376 * 184.99739 * 8 7 6 12 12 N 1.46497 * 109.46900 * 180.02562 * 11 8 7 13 13 C 1.34783 * 119.99638 * 180.02562 * 12 11 8 14 14 O 1.21276 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99567 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46548 * 179.97438 * 15 13 12 17 17 C 1.76208 * 99.99641 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99639 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00457 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46901 * 60.00207 * 21 19 17 23 23 H 1.48504 * 109.46851 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46944 * 300.00164 * 21 19 17 25 25 C 1.33644 * 114.49265 * 0.23437 * 4 3 2 26 26 S 1.70975 * 124.91775 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47274 * 89.99991 * 1 2 3 28 28 H 1.08999 * 109.47093 * 210.00086 * 1 2 3 29 29 H 1.09008 * 109.47145 * 330.00075 * 1 2 3 30 30 H 1.08994 * 109.47000 * 155.02688 * 5 4 3 31 31 H 1.08992 * 109.47389 * 35.02194 * 5 4 3 32 32 H 1.00901 * 111.00196 * 303.94903 * 6 5 4 33 33 H 1.09005 * 109.47208 * 59.99899 * 7 6 5 34 34 H 1.08999 * 109.46786 * 299.99678 * 7 6 5 35 35 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 36 36 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 37 37 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 38 38 H 0.96996 * 120.00310 * 359.97438 * 12 11 8 39 39 H 1.08998 * 109.47167 * 299.99565 * 15 13 12 40 40 H 1.09001 * 109.47098 * 60.00477 * 15 13 12 41 41 H 0.96996 * 120.00031 * 180.02562 * 20 19 17 42 42 H 1.08000 * 126.03123 * 179.76689 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 7 4.7571 2.4746 -1.3799 7 6 5.7095 3.5924 -1.4196 8 6 5.9198 4.0321 -2.8699 9 1 6.2302 3.1753 -3.4680 10 8 4.6973 4.5583 -3.3901 11 6 7.0033 5.1110 -2.9238 12 7 7.2042 5.5323 -4.3124 13 6 8.1172 6.4801 -4.6036 14 8 8.7719 6.9844 -3.7161 15 6 8.3242 6.9131 -6.0322 16 16 9.6059 8.1896 -6.0958 17 6 9.6416 8.5011 -7.8298 18 1 8.9831 7.9561 -8.4899 19 6 10.5153 9.4474 -8.3469 20 7 11.3176 10.1119 -7.5423 21 14 10.5527 9.7781 -10.1851 22 1 9.2149 10.2430 -10.6316 23 1 11.5637 10.8254 -10.4791 24 1 10.9088 8.5294 -10.9055 25 6 3.9354 -0.4006 -0.0040 26 16 2.4856 -1.4020 0.0006 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 5.4746 1.6955 0.4344 31 1 4.1272 2.8482 0.5890 32 1 5.0704 1.7123 -1.9621 33 1 6.6616 3.2738 -0.9952 34 1 5.3145 4.4269 -0.8402 35 1 4.3612 5.3247 -2.9055 36 1 6.6929 5.9678 -2.3257 37 1 7.9358 4.7096 -2.5269 38 1 6.6808 5.1287 -5.0223 39 1 8.6343 6.0563 -6.6302 40 1 7.3918 7.3149 -6.4288 41 1 11.9279 10.7735 -7.9037 42 1 4.9545 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272373634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:07 Heat of formation + Delta-G solvation = -45.739857 kcal Electronic energy + Delta-G solvation = -23552.031945 eV Core-core repulsion = 19785.043847 eV Total energy + Delta-G solvation = -3766.988097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.38401 -39.41793 -38.08474 -35.84034 -34.05706 -32.85908 -32.41496 -30.72853 -29.31995 -28.51835 -26.76104 -25.47142 -24.20301 -22.77337 -22.04234 -20.29984 -20.11337 -18.34379 -17.91454 -17.10455 -16.57444 -16.34836 -15.88864 -15.66527 -15.37824 -15.27747 -14.79420 -14.78471 -14.65854 -14.35957 -13.92586 -13.80060 -13.34071 -13.21699 -13.02433 -12.95467 -12.74943 -12.66012 -12.53021 -12.26435 -11.72758 -11.66795 -11.28648 -11.03253 -11.02469 -10.76759 -10.34846 -10.04699 -9.85142 -9.80765 -9.41256 -9.25660 -9.05191 -8.91628 -8.82876 -8.23045 -6.48842 -6.20264 -3.90943 0.23292 0.89336 1.25994 2.27066 3.00148 3.09990 3.24914 3.28021 3.31033 3.52701 3.63875 3.89829 4.20874 4.22051 4.37841 4.49913 4.61475 4.68464 4.72956 4.80241 4.84365 4.96073 5.00735 5.12707 5.14888 5.19304 5.23584 5.32280 5.37949 5.53243 5.68698 5.71942 5.79885 5.91927 6.16812 6.40775 6.60542 6.84604 7.35030 7.44015 7.60795 7.72965 8.36542 8.61544 9.24973 10.87128 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.033405 B = 0.001358 C = 0.001337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.002680 B =20611.397152 C =20933.332224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.456 5.456 4 C 0.079 3.921 5 C 0.133 3.867 6 N -0.671 5.671 7 C 0.030 3.970 8 C 0.102 3.898 9 H 0.103 0.897 10 O -0.545 6.545 11 C 0.090 3.910 12 N -0.732 5.732 13 C 0.532 3.468 14 O -0.521 6.521 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.259 4.259 26 S 0.114 5.886 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.342 0.658 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.377 0.623 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.403 0.597 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.274 -25.107 17.408 36.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.228 4.228 3 N -0.171 5.171 4 C -0.054 4.054 5 C 0.001 3.999 6 N -0.303 5.303 7 C -0.100 4.100 8 C 0.042 3.958 9 H 0.120 0.880 10 O -0.350 6.350 11 C -0.035 4.035 12 N -0.388 5.388 13 C 0.318 3.682 14 O -0.395 6.395 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.399 4.399 26 S 0.369 5.631 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.160 0.840 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.238 0.762 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.982 -24.764 18.496 36.806 hybrid contribution 0.559 0.010 -1.908 1.988 sum -19.423 -24.754 16.588 35.569 Atomic orbital electron populations 1.20470 0.85043 1.04260 1.04145 1.27119 1.01929 0.90765 1.02951 1.66078 1.04414 1.31295 1.15322 1.20087 0.90267 0.93534 1.01495 1.20417 0.94271 0.94182 0.90991 1.60283 1.49578 1.11409 1.08988 1.22622 0.94574 0.95312 0.97487 1.22083 0.84339 0.95684 0.93716 0.87963 1.86604 1.39060 1.50801 1.58573 1.21903 0.99046 0.97819 0.84749 1.45852 1.41939 1.42462 1.08520 1.20333 0.78585 0.78224 0.91073 1.90696 1.46002 1.54128 1.48675 1.23526 1.06517 1.05467 0.94842 1.85370 1.43895 1.43694 1.10477 1.22839 1.26406 1.26912 0.92290 0.90945 1.24986 0.94569 0.94904 0.99061 1.70009 1.21606 1.23617 1.35117 0.86223 0.78056 0.78121 0.83097 1.19925 1.20810 1.19943 1.26867 1.03321 0.95965 1.13778 1.84012 0.97835 1.12935 1.68361 0.89358 0.90095 0.89109 0.93342 0.89060 0.83977 0.93713 0.89864 0.77539 0.91229 0.90879 0.76238 0.89217 0.89125 0.92142 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.46 36.00 0.38 0.04 16 2 C 0.05 0.38 7.39 -13.46 -0.10 0.28 16 3 N -0.46 -4.44 10.53 -8.06 -0.08 -4.53 16 4 C 0.08 0.66 6.25 -84.22 -0.53 0.13 16 5 C 0.13 0.95 6.12 -4.98 -0.03 0.92 16 6 N -0.67 -5.11 6.44 -115.06 -0.74 -5.85 16 7 C 0.03 0.20 5.32 -3.82 -0.02 0.18 16 8 C 0.10 0.83 3.23 -26.73 -0.09 0.74 16 9 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 10 O -0.55 -5.20 13.03 -35.23 -0.46 -5.66 16 11 C 0.09 0.97 5.34 -4.04 -0.02 0.95 16 12 N -0.73 -9.81 5.45 -60.30 -0.33 -10.14 16 13 C 0.53 9.99 7.85 -10.98 -0.09 9.90 16 14 O -0.52 -11.83 15.86 5.56 0.09 -11.74 16 15 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.26 -1.71 11.12 29.12 0.32 -1.39 16 26 S 0.11 0.68 23.18 -107.50 -2.49 -1.81 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.05 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.34 2.45 8.72 -39.29 -0.34 2.10 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.38 2.77 9.05 45.56 0.41 3.19 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 4.61 8.35 -40.82 -0.34 4.27 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 40 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -37.04 391.34 -9.68 -46.72 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.31 Total: 4.31 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 0.25 Total: -4.25 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.42 Total: -46.09 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.37 Total: -17.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -4.70 Total: -5.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.04 -9.68 -46.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272373634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.980 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds