Wall clock time and date at job start Wed Apr 1 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91580 * 2 1 4 4 C 1.31786 * 117.12909 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.75388 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46722 * 275.02652 * 5 4 3 7 7 C 1.46900 * 110.99888 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47407 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47269 * 305.00036 * 8 7 6 10 10 O 1.42903 * 109.46459 * 64.99929 * 8 7 6 11 11 C 1.53001 * 109.47376 * 184.99739 * 8 7 6 12 12 N 1.46497 * 109.46900 * 180.02562 * 11 8 7 13 13 C 1.34783 * 119.99638 * 180.02562 * 12 11 8 14 14 O 1.21276 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99567 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46548 * 179.97438 * 15 13 12 17 17 C 1.76208 * 99.99641 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99639 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00457 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46901 * 60.00207 * 21 19 17 23 23 H 1.48504 * 109.46851 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46944 * 300.00164 * 21 19 17 25 25 C 1.33644 * 114.49265 * 0.23437 * 4 3 2 26 26 S 1.70975 * 124.91775 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47274 * 89.99991 * 1 2 3 28 28 H 1.08999 * 109.47093 * 210.00086 * 1 2 3 29 29 H 1.09008 * 109.47145 * 330.00075 * 1 2 3 30 30 H 1.08994 * 109.47000 * 155.02688 * 5 4 3 31 31 H 1.08992 * 109.47389 * 35.02194 * 5 4 3 32 32 H 1.00901 * 111.00196 * 303.94903 * 6 5 4 33 33 H 1.09005 * 109.47208 * 59.99899 * 7 6 5 34 34 H 1.08999 * 109.46786 * 299.99678 * 7 6 5 35 35 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 36 36 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 37 37 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 38 38 H 0.96996 * 120.00310 * 359.97438 * 12 11 8 39 39 H 1.08998 * 109.47167 * 299.99565 * 15 13 12 40 40 H 1.09001 * 109.47098 * 60.00477 * 15 13 12 41 41 H 0.96996 * 120.00031 * 180.02562 * 20 19 17 42 42 H 1.08000 * 126.03123 * 179.76689 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 7 4.7571 2.4746 -1.3799 7 6 5.7095 3.5924 -1.4196 8 6 5.9198 4.0321 -2.8699 9 1 6.2302 3.1753 -3.4680 10 8 4.6973 4.5583 -3.3901 11 6 7.0033 5.1110 -2.9238 12 7 7.2042 5.5323 -4.3124 13 6 8.1172 6.4801 -4.6036 14 8 8.7719 6.9844 -3.7161 15 6 8.3242 6.9131 -6.0322 16 16 9.6059 8.1896 -6.0958 17 6 9.6416 8.5011 -7.8298 18 1 8.9831 7.9561 -8.4899 19 6 10.5153 9.4474 -8.3469 20 7 11.3176 10.1119 -7.5423 21 14 10.5527 9.7781 -10.1851 22 1 9.2149 10.2430 -10.6316 23 1 11.5637 10.8254 -10.4791 24 1 10.9088 8.5294 -10.9055 25 6 3.9354 -0.4006 -0.0040 26 16 2.4856 -1.4020 0.0006 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 5.4746 1.6955 0.4344 31 1 4.1272 2.8482 0.5890 32 1 5.0704 1.7123 -1.9621 33 1 6.6616 3.2738 -0.9952 34 1 5.3145 4.4269 -0.8402 35 1 4.3612 5.3247 -2.9055 36 1 6.6929 5.9678 -2.3257 37 1 7.9358 4.7096 -2.5269 38 1 6.6808 5.1287 -5.0223 39 1 8.6343 6.0563 -6.6302 40 1 7.3918 7.3149 -6.4288 41 1 11.9279 10.7735 -7.9037 42 1 4.9545 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272373634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:06 Heat of formation + Delta-G solvation = -77.273083 kcal Electronic energy + Delta-G solvation = -23553.399328 eV Core-core repulsion = 19785.043847 eV Total energy + Delta-G solvation = -3768.355481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91981 -40.70063 -38.97752 -36.48059 -35.24800 -34.58212 -33.34038 -31.81089 -30.33782 -29.16766 -27.76172 -27.37174 -24.94676 -23.27663 -22.76684 -21.68049 -20.63246 -19.85579 -18.87126 -18.07525 -17.75139 -17.35177 -16.87770 -16.71956 -16.40364 -16.23115 -16.13714 -15.76209 -15.63658 -15.31921 -14.94156 -14.62239 -14.40802 -14.32895 -13.98626 -13.86742 -13.68012 -13.28941 -13.17394 -13.16934 -13.01910 -12.86349 -12.79340 -12.62809 -12.17180 -11.97651 -11.75787 -11.19461 -11.12835 -10.86213 -10.57236 -10.35591 -10.28895 -10.14491 -9.73816 -9.36422 -8.66855 -8.34460 -6.12839 -0.25522 0.43852 0.76966 1.26639 1.44255 1.46546 1.56527 1.60129 1.73199 2.23677 2.28650 2.99595 3.07511 3.22546 3.32680 3.54711 3.81220 3.88768 3.96748 4.05932 4.11643 4.19713 4.29487 4.33497 4.44971 4.50392 4.51317 4.54027 4.66087 4.67162 4.72894 4.84317 5.02026 5.06344 5.23887 5.39291 5.41753 5.90032 6.19719 6.32743 6.48148 6.82622 6.85173 7.06715 7.22821 8.74523 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.033405 B = 0.001358 C = 0.001337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.002680 B =20611.397152 C =20933.332224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.034 3.966 3 N -0.496 5.496 4 C 0.057 3.943 5 C 0.137 3.863 6 N -0.682 5.682 7 C 0.037 3.963 8 C 0.117 3.883 9 H 0.110 0.890 10 O -0.560 6.560 11 C 0.090 3.910 12 N -0.707 5.707 13 C 0.534 3.466 14 O -0.566 6.566 15 C -0.131 4.131 16 S -0.150 6.150 17 C -0.550 4.550 18 H 0.082 0.918 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.262 4.262 26 S 0.145 5.855 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.345 0.655 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.386 0.614 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.416 0.584 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.546 -27.160 16.502 38.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.243 4.243 3 N -0.212 5.212 4 C -0.075 4.075 5 C 0.005 3.995 6 N -0.314 5.314 7 C -0.093 4.093 8 C 0.057 3.943 9 H 0.128 0.872 10 O -0.366 6.366 11 C -0.035 4.035 12 N -0.361 5.361 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.282 4.282 16 S 0.078 5.922 17 C -0.697 4.697 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.402 4.402 26 S 0.400 5.600 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.253 0.747 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -21.308 -26.865 17.596 38.540 hybrid contribution 0.849 0.516 -1.537 1.830 sum -20.459 -26.349 16.059 37.023 Atomic orbital electron populations 1.20599 0.83436 1.05144 1.04819 1.27609 1.03192 0.91098 1.02439 1.66101 1.05365 1.32826 1.16862 1.20276 0.90172 0.94452 1.02592 1.20384 0.94806 0.93675 0.90596 1.60238 1.49924 1.11712 1.09477 1.22526 0.95118 0.95255 0.96429 1.21966 0.82926 0.94638 0.94770 0.87221 1.86581 1.39400 1.51402 1.59250 1.22096 1.00109 0.98588 0.82720 1.45617 1.39885 1.40294 1.10344 1.20037 0.79236 0.79001 0.89778 1.90686 1.48175 1.56171 1.49466 1.23376 1.04390 1.03562 0.96850 1.85525 1.47837 1.47449 1.11438 1.23189 1.26811 1.27330 0.92396 0.89966 1.26116 0.93839 0.94382 1.04656 1.70174 1.22515 1.24375 1.37659 0.85009 0.78530 0.78367 0.76119 1.18726 1.20305 1.18655 1.27171 1.04651 0.95669 1.12662 1.83852 0.96977 1.11713 1.67483 0.88684 0.87956 0.89498 0.91571 0.90230 0.83676 0.92469 0.89833 0.76541 0.91509 0.90844 0.74681 0.87282 0.87408 0.91964 0.78649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.46 71.23 0.75 0.13 16 2 C 0.03 0.48 7.39 88.52 0.65 1.14 16 3 N -0.50 -9.49 10.53 -179.41 -1.89 -11.38 16 4 C 0.06 0.91 6.25 41.52 0.26 1.17 16 5 C 0.14 1.81 6.12 85.56 0.52 2.34 16 6 N -0.68 -9.41 6.44 -517.94 -3.34 -12.74 16 7 C 0.04 0.43 5.32 86.30 0.46 0.89 16 8 C 0.12 1.66 3.23 30.60 0.10 1.76 16 9 H 0.11 1.44 8.14 -2.39 -0.02 1.43 16 10 O -0.56 -9.61 13.03 -148.98 -1.94 -11.55 16 11 C 0.09 1.78 5.34 86.38 0.46 2.24 16 12 N -0.71 -17.69 5.45 -463.06 -2.52 -20.21 16 13 C 0.53 19.67 7.85 87.66 0.69 20.36 16 14 O -0.57 -26.05 15.86 -3.02 -0.05 -26.09 16 15 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 16 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 17 C -0.55 -31.66 9.50 67.95 0.65 -31.01 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.85 5.49 84.86 0.47 1.32 16 20 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 21 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 25 C -0.26 -3.05 11.12 66.78 0.74 -2.31 16 26 S 0.14 1.50 23.18 -56.49 -1.31 0.19 16 27 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.61 8.10 -2.39 -0.02 0.59 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.34 4.34 8.72 -89.69 -0.78 3.56 16 33 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.39 5.08 9.05 -74.06 -0.67 4.41 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.42 8.44 8.35 -92.71 -0.77 7.66 16 39 H 0.11 3.94 8.14 -2.40 -0.02 3.93 16 40 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -81.83 391.34 -4.87 -86.70 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -1.16 Total: 21.48 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 6.18 Total: -6.78 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -7.46 Total: -100.22 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.99 Total: -37.64 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -6.87 SS G_CDS: -2.47 Total: -9.34 kcal Total: -81.83 -4.87 -86.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272373634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.425 kcal (2) G-P(sol) polarization free energy of solvation -81.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds