Wall clock time and date at job start Wed Apr 1 2020 02:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33646 * 122.75094 * 2 1 4 4 S 1.76198 * 107.92455 * 179.75945 * 3 2 1 5 5 C 1.70976 * 90.28380 * 0.28341 * 4 3 2 6 6 C 1.50695 * 124.91639 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46941 * 269.69159 * 6 5 4 8 8 C 1.46905 * 111.00329 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46862 * 325.00539 * 8 7 6 10 10 C 1.52994 * 109.46799 * 85.00053 * 8 7 6 11 11 O 1.42899 * 109.47599 * 65.00568 * 10 8 7 12 12 C 1.52997 * 109.47325 * 205.00325 * 8 7 6 13 13 N 1.46505 * 109.47212 * 54.99792 * 12 8 7 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 8 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00024 * 22 20 18 24 24 H 1.48506 * 109.46989 * 210.00023 * 22 20 18 25 25 H 1.48506 * 109.47313 * 329.99924 * 22 20 18 26 26 N 1.29026 * 110.16339 * 359.70967 * 5 4 3 27 27 H 1.09001 * 109.47500 * 270.00025 * 1 2 3 28 28 H 1.09000 * 109.47018 * 29.99938 * 1 2 3 29 29 H 1.08997 * 109.46921 * 149.99622 * 1 2 3 30 30 H 1.08001 * 126.03286 * 359.97204 * 3 2 1 31 31 H 1.09003 * 109.47507 * 149.69596 * 6 5 4 32 32 H 1.09002 * 109.47534 * 29.69229 * 6 5 4 33 33 H 1.00899 * 111.00432 * 303.95584 * 7 6 5 34 34 H 1.09009 * 109.47010 * 185.00339 * 10 8 7 35 35 H 1.09000 * 109.47718 * 305.00130 * 10 8 7 36 36 H 0.96692 * 114.00196 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.47153 * 294.99784 * 12 8 7 38 38 H 1.09001 * 109.46832 * 174.99975 * 12 8 7 39 39 H 0.96996 * 119.99606 * 0.02562 * 13 12 8 40 40 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 41 41 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 42 42 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5040 -0.9818 0.0008 6 6 4.4835 -2.1270 0.0021 7 7 4.8021 -2.5003 -1.3825 8 6 5.7572 -3.6159 -1.4206 9 1 6.4556 -3.5248 -0.5887 10 6 4.9992 -4.9401 -1.3074 11 8 4.1691 -5.1137 -2.4575 12 6 6.5293 -3.5815 -2.7409 13 7 7.1581 -2.2684 -2.9048 14 6 7.8954 -2.0067 -4.0022 15 8 8.0380 -2.8579 -4.8543 16 6 8.5417 -0.6558 -4.1711 17 16 9.4553 -0.6151 -5.7331 18 6 10.0901 1.0276 -5.6736 19 1 9.8642 1.6635 -4.8304 20 6 10.8793 1.5046 -6.7109 21 7 11.1533 0.7300 -7.7393 22 14 11.5516 3.2462 -6.6481 23 1 12.8750 3.2421 -5.9743 24 1 11.7014 3.7691 -8.0300 25 1 10.6130 4.1122 -5.8903 26 7 2.2199 -1.1082 0.0005 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.8391 2.1308 -0.0004 31 1 4.0432 -2.9813 0.5165 32 1 5.3959 -1.8243 0.5159 33 1 3.9645 -2.7233 -1.8988 34 1 5.7119 -5.7626 -1.2462 35 1 4.3797 -4.9287 -0.4106 36 1 3.6582 -5.9347 -2.4536 37 1 5.8427 -3.7613 -3.5682 38 1 7.2982 -4.3540 -2.7324 39 1 7.0443 -1.5878 -2.2232 40 1 7.7725 0.1164 -4.1803 41 1 9.2279 -0.4753 -3.3436 42 1 11.7052 1.0632 -8.4640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278048061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:38 Heat of formation + Delta-G solvation = -43.319334 kcal Electronic energy + Delta-G solvation = -24574.560964 eV Core-core repulsion = 20807.677829 eV Total energy + Delta-G solvation = -3766.883136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21364 -39.29288 -38.18306 -35.93598 -34.19675 -32.45006 -32.36285 -30.52478 -28.96380 -27.96180 -26.62999 -25.63346 -25.15938 -22.68125 -21.19154 -20.10031 -19.98380 -18.19771 -17.81486 -17.70885 -16.48207 -16.17840 -16.06637 -15.50814 -15.37614 -15.07698 -14.76269 -14.71216 -14.40634 -14.00960 -13.91980 -13.67012 -13.35599 -13.03326 -12.92678 -12.83314 -12.60918 -12.51629 -12.27777 -12.04084 -11.68143 -11.56820 -11.40539 -11.01618 -10.95998 -10.71058 -10.43424 -9.97160 -9.74696 -9.70197 -9.25161 -9.04354 -9.00923 -8.83988 -8.62889 -8.14471 -6.41821 -6.15519 -3.84979 0.38383 1.10220 1.50049 2.42503 3.14559 3.26048 3.28633 3.32307 3.37888 3.51289 3.71935 3.88874 4.10792 4.26682 4.47587 4.54294 4.67034 4.81006 4.82734 4.90699 4.95742 5.04323 5.13268 5.19365 5.21205 5.22278 5.34930 5.36796 5.55867 5.67382 5.79162 5.91782 6.01379 6.07841 6.26149 6.48051 6.81204 6.98309 7.22918 7.43541 7.65667 7.96326 8.41548 8.81646 9.29688 10.91932 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.002513 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.863076 B =11140.582674 C =13342.915879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 C -0.268 4.268 4 S 0.159 5.841 5 C 0.048 3.952 6 C 0.133 3.867 7 N -0.673 5.673 8 C 0.080 3.920 9 H 0.098 0.902 10 C 0.048 3.952 11 O -0.564 6.564 12 C 0.138 3.862 13 N -0.726 5.726 14 C 0.530 3.470 15 O -0.524 6.524 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.533 4.533 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.471 5.471 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.362 0.638 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.382 0.618 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.826 -6.078 22.524 30.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.408 4.408 4 S 0.414 5.586 5 C -0.230 4.230 6 C 0.001 3.999 7 N -0.307 5.307 8 C -0.031 4.031 9 H 0.116 0.884 10 C -0.033 4.033 11 O -0.370 6.370 12 C 0.013 3.987 13 N -0.380 5.380 14 C 0.316 3.684 15 O -0.399 6.399 16 C -0.302 4.302 17 S 0.165 5.835 18 C -0.681 4.681 19 H 0.090 0.910 20 C -0.137 4.137 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.187 5.187 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.193 0.807 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.183 0.817 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.229 0.771 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.004 -6.444 20.705 28.185 hybrid contribution -1.576 1.225 1.818 2.700 sum -19.581 -5.219 22.522 30.297 Atomic orbital electron populations 1.20348 0.87181 1.03429 1.02793 1.20265 0.98233 0.86503 1.01861 1.26926 0.95800 1.04088 1.13963 1.84165 1.06384 1.02003 1.66066 1.26772 0.93772 0.98721 1.03755 1.20499 0.95158 0.92565 0.91639 1.60507 1.19168 1.39755 1.11306 1.21990 0.93994 0.87485 0.99606 0.88413 1.22795 0.93787 0.98433 0.88248 1.86501 1.61431 1.45909 1.43136 1.21101 0.95655 0.85674 0.96265 1.45774 1.52929 1.15700 1.23583 1.20253 0.77936 0.89330 0.80895 1.90692 1.60033 1.47831 1.41316 1.23508 1.03262 0.96294 1.07116 1.85385 1.61531 1.18981 1.17654 1.22877 1.36885 0.99048 1.09331 0.90977 1.24989 0.95593 0.98519 0.94559 1.70025 1.35961 1.36092 1.08294 0.86181 0.79170 0.82680 0.77531 1.20327 1.20810 1.19704 1.66102 1.04557 1.31937 1.16073 0.90782 0.90701 0.90612 0.80678 0.92117 0.88653 0.81705 0.92532 0.93333 0.77078 0.90539 0.91516 0.76469 0.89301 0.89446 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.31 36.00 0.37 -0.15 16 2 C 0.06 0.60 6.74 -84.23 -0.57 0.04 16 3 C -0.27 -2.27 11.13 29.12 0.32 -1.95 16 4 S 0.16 1.38 23.18 -107.50 -2.49 -1.11 16 5 C 0.05 0.45 6.90 -13.46 -0.09 0.36 16 6 C 0.13 0.98 6.06 -4.98 -0.03 0.95 16 7 N -0.67 -5.87 5.68 -108.00 -0.61 -6.48 16 8 C 0.08 0.64 2.57 -67.71 -0.17 0.47 16 9 H 0.10 0.61 7.80 -51.93 -0.40 0.21 16 10 C 0.05 0.31 6.71 37.15 0.25 0.56 16 11 O -0.56 -4.54 12.05 -35.23 -0.42 -4.97 16 12 C 0.14 1.69 5.26 -4.04 -0.02 1.67 16 13 N -0.73 -10.33 5.39 -60.29 -0.32 -10.66 16 14 C 0.53 10.42 7.85 -10.99 -0.09 10.34 16 15 O -0.52 -12.48 15.86 5.56 0.09 -12.39 16 16 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 17 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 18 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.61 13.22 55.49 0.73 -25.88 16 22 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 N -0.47 -5.01 10.53 -8.06 -0.08 -5.09 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.06 0.41 7.36 -51.93 -0.38 0.03 16 32 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.36 3.76 7.93 -39.29 -0.31 3.45 16 34 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 35 H 0.05 0.26 7.35 -51.93 -0.38 -0.12 16 36 H 0.38 1.51 9.12 45.56 0.42 1.92 16 37 H 0.08 1.13 7.39 -51.93 -0.38 0.75 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 4.78 8.14 -40.82 -0.33 4.45 16 40 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -37.39 386.34 -9.26 -46.65 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.13 Total: 5.21 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 0.39 Total: -3.86 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.29 Total: -48.11 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.34 Total: -17.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -4.70 Total: -5.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.39 -9.26 -46.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278048061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.334 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds