Wall clock time and date at job start Wed Apr 1 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33646 * 122.75094 * 2 1 4 4 S 1.76198 * 107.92455 * 179.75945 * 3 2 1 5 5 C 1.70976 * 90.28380 * 0.28341 * 4 3 2 6 6 C 1.50695 * 124.91639 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46941 * 269.69159 * 6 5 4 8 8 C 1.46905 * 111.00329 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46862 * 325.00539 * 8 7 6 10 10 C 1.52994 * 109.46799 * 85.00053 * 8 7 6 11 11 O 1.42899 * 109.47599 * 65.00568 * 10 8 7 12 12 C 1.52997 * 109.47325 * 205.00325 * 8 7 6 13 13 N 1.46505 * 109.47212 * 54.99792 * 12 8 7 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 8 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00024 * 22 20 18 24 24 H 1.48506 * 109.46989 * 210.00023 * 22 20 18 25 25 H 1.48506 * 109.47313 * 329.99924 * 22 20 18 26 26 N 1.29026 * 110.16339 * 359.70967 * 5 4 3 27 27 H 1.09001 * 109.47500 * 270.00025 * 1 2 3 28 28 H 1.09000 * 109.47018 * 29.99938 * 1 2 3 29 29 H 1.08997 * 109.46921 * 149.99622 * 1 2 3 30 30 H 1.08001 * 126.03286 * 359.97204 * 3 2 1 31 31 H 1.09003 * 109.47507 * 149.69596 * 6 5 4 32 32 H 1.09002 * 109.47534 * 29.69229 * 6 5 4 33 33 H 1.00899 * 111.00432 * 303.95584 * 7 6 5 34 34 H 1.09009 * 109.47010 * 185.00339 * 10 8 7 35 35 H 1.09000 * 109.47718 * 305.00130 * 10 8 7 36 36 H 0.96692 * 114.00196 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.47153 * 294.99784 * 12 8 7 38 38 H 1.09001 * 109.46832 * 174.99975 * 12 8 7 39 39 H 0.96996 * 119.99606 * 0.02562 * 13 12 8 40 40 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 41 41 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 42 42 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5040 -0.9818 0.0008 6 6 4.4835 -2.1270 0.0021 7 7 4.8021 -2.5003 -1.3825 8 6 5.7572 -3.6159 -1.4206 9 1 6.4556 -3.5248 -0.5887 10 6 4.9992 -4.9401 -1.3074 11 8 4.1691 -5.1137 -2.4575 12 6 6.5293 -3.5815 -2.7409 13 7 7.1581 -2.2684 -2.9048 14 6 7.8954 -2.0067 -4.0022 15 8 8.0380 -2.8579 -4.8543 16 6 8.5417 -0.6558 -4.1711 17 16 9.4553 -0.6151 -5.7331 18 6 10.0901 1.0276 -5.6736 19 1 9.8642 1.6635 -4.8304 20 6 10.8793 1.5046 -6.7109 21 7 11.1533 0.7300 -7.7393 22 14 11.5516 3.2462 -6.6481 23 1 12.8750 3.2421 -5.9743 24 1 11.7014 3.7691 -8.0300 25 1 10.6130 4.1122 -5.8903 26 7 2.2199 -1.1082 0.0005 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.8391 2.1308 -0.0004 31 1 4.0432 -2.9813 0.5165 32 1 5.3959 -1.8243 0.5159 33 1 3.9645 -2.7233 -1.8988 34 1 5.7119 -5.7626 -1.2462 35 1 4.3797 -4.9287 -0.4106 36 1 3.6582 -5.9347 -2.4536 37 1 5.8427 -3.7613 -3.5682 38 1 7.2982 -4.3540 -2.7324 39 1 7.0443 -1.5878 -2.2232 40 1 7.7725 0.1164 -4.1803 41 1 9.2279 -0.4753 -3.3436 42 1 11.7052 1.0632 -8.4640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278048061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:37 Heat of formation + Delta-G solvation = -75.074817 kcal Electronic energy + Delta-G solvation = -24575.937985 eV Core-core repulsion = 20807.677829 eV Total energy + Delta-G solvation = -3768.260157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.88843 -40.57102 -39.08594 -36.58244 -35.35647 -34.56095 -33.23349 -31.57379 -30.20859 -28.54750 -27.68561 -27.24812 -26.29777 -23.29640 -21.95979 -21.57027 -20.63249 -19.79014 -18.79545 -18.40679 -17.71388 -17.43047 -16.85991 -16.78696 -16.46817 -16.32817 -16.07357 -15.78691 -15.43154 -15.15323 -14.71392 -14.60046 -14.52136 -14.27551 -14.12769 -13.54931 -13.51664 -13.39757 -13.14108 -13.12376 -12.89452 -12.81936 -12.66901 -12.54604 -12.28842 -12.19133 -11.70545 -11.12095 -10.98396 -10.86133 -10.65306 -10.36864 -10.24261 -9.97488 -9.67509 -9.47433 -8.63898 -8.32245 -6.10104 -0.26518 0.47275 0.85035 1.29790 1.44011 1.49443 1.60247 1.70660 1.76301 2.29109 2.39439 2.90849 3.01591 3.18398 3.36923 3.55293 3.82231 3.88974 4.00803 4.15624 4.27157 4.29804 4.34065 4.36870 4.41541 4.49169 4.55065 4.60097 4.70414 4.75318 4.78084 4.83898 4.98675 5.03045 5.35662 5.44009 5.53915 5.87542 6.20628 6.22302 6.64754 6.78290 6.88446 7.08757 7.36336 8.77078 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.002513 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.863076 B =11140.582674 C =13342.915879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 C -0.271 4.271 4 S 0.158 5.842 5 C 0.039 3.961 6 C 0.136 3.864 7 N -0.682 5.682 8 C 0.088 3.912 9 H 0.125 0.875 10 C 0.050 3.950 11 O -0.590 6.590 12 C 0.138 3.862 13 N -0.697 5.697 14 C 0.530 3.470 15 O -0.573 6.573 16 C -0.126 4.126 17 S -0.154 6.154 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.258 1.258 26 N -0.495 5.495 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.196 0.804 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.352 0.648 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.340 -4.796 25.123 32.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.411 4.411 4 S 0.413 5.587 5 C -0.239 4.239 6 C 0.005 3.995 7 N -0.315 5.315 8 C -0.022 4.022 9 H 0.143 0.857 10 C -0.030 4.030 11 O -0.399 6.399 12 C 0.014 3.986 13 N -0.351 5.351 14 C 0.315 3.685 15 O -0.452 6.452 16 C -0.278 4.278 17 S 0.073 5.927 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.182 1.182 26 N -0.211 5.211 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.213 0.787 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.171 0.829 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.556 -5.170 23.372 30.287 hybrid contribution -1.522 0.765 1.086 2.020 sum -20.078 -4.405 24.458 31.949 Atomic orbital electron populations 1.20411 0.85702 1.03831 1.03603 1.20718 0.99480 0.86583 1.02158 1.27223 0.95578 1.04924 1.13327 1.84097 1.06797 1.01852 1.66001 1.27129 0.93846 0.99477 1.03450 1.20606 0.95697 0.92322 0.90874 1.60453 1.18781 1.40052 1.12208 1.21963 0.94104 0.88427 0.97706 0.85678 1.22820 0.94027 0.97718 0.88415 1.86463 1.62030 1.47283 1.44074 1.21209 0.95317 0.84127 0.97972 1.45541 1.50682 1.16955 1.21882 1.20061 0.78419 0.88281 0.81713 1.90680 1.62149 1.48979 1.43399 1.23346 1.03181 0.97874 1.03377 1.85581 1.63469 1.20130 1.23479 1.23201 1.37109 0.98963 1.09929 0.89932 1.26149 0.95680 1.03590 0.93877 1.70193 1.36852 1.38577 1.09250 0.84941 0.78742 0.76346 0.77857 1.19196 1.20362 1.18173 1.66141 1.05282 1.32814 1.16907 0.89727 0.89188 0.91305 0.78679 0.91173 0.86620 0.82915 0.91357 0.91496 0.75265 0.93229 0.91686 0.74669 0.87735 0.87165 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.31 71.23 0.73 -0.19 16 2 C 0.04 0.76 6.74 41.52 0.28 1.04 16 3 C -0.27 -4.20 11.13 66.78 0.74 -3.45 16 4 S 0.16 2.49 23.18 -56.49 -1.31 1.18 16 5 C 0.04 0.67 6.90 88.52 0.61 1.28 16 6 C 0.14 1.67 6.06 85.56 0.52 2.19 16 7 N -0.68 -10.54 5.68 -495.59 -2.81 -13.35 16 8 C 0.09 1.21 2.57 44.91 0.12 1.32 16 9 H 0.13 1.07 7.80 -2.39 -0.02 1.06 16 10 C 0.05 0.54 6.71 71.98 0.48 1.02 16 11 O -0.59 -8.90 12.05 -148.98 -1.80 -10.69 16 12 C 0.14 3.25 5.26 86.38 0.45 3.70 16 13 N -0.70 -18.85 5.39 -463.06 -2.50 -21.35 16 14 C 0.53 20.69 7.85 87.66 0.69 21.37 16 15 O -0.57 -28.00 15.86 -3.03 -0.05 -28.04 16 16 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 17 S -0.15 -8.79 20.57 -56.49 -1.16 -9.95 16 18 C -0.54 -31.65 9.50 67.95 0.65 -31.01 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.94 13.22 21.65 0.29 -56.66 16 22 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 N -0.49 -10.01 10.53 -179.41 -1.89 -11.90 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.77 8.12 -2.39 -0.02 0.75 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.07 0.75 7.36 -2.39 -0.02 0.73 16 32 H 0.12 0.93 8.05 -2.39 -0.02 0.91 16 33 H 0.35 6.90 7.93 -89.69 -0.71 6.18 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 0.51 7.35 -2.39 -0.02 0.49 16 36 H 0.40 2.74 9.12 -74.06 -0.68 2.07 16 37 H 0.05 1.48 7.39 -2.39 -0.02 1.46 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.42 8.84 8.14 -92.71 -0.75 8.09 16 40 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 41 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 42 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -83.83 386.34 -4.09 -87.92 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -1.06 Total: 23.05 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 6.18 Total: -6.40 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -6.91 Total: -103.25 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.84 Total: -38.74 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -2.47 Total: -8.77 kcal Total: -83.83 -4.09 -87.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278048061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.844 kcal (2) G-P(sol) polarization free energy of solvation -83.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds