Wall clock time and date at job start Wed Apr 1 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99878 * 2 1 4 4 C 1.53003 * 109.47356 * 90.00093 * 3 2 1 5 5 H 1.09004 * 109.47149 * 305.00173 * 4 3 2 6 6 O 1.42902 * 109.47042 * 64.99669 * 4 3 2 7 7 C 1.52997 * 109.47071 * 185.00012 * 4 3 2 8 8 N 1.46904 * 109.46950 * 180.02562 * 7 4 3 9 9 C 1.46899 * 111.00029 * 180.02562 * 8 7 4 10 10 C 1.50703 * 109.47107 * 179.97438 * 9 8 7 11 11 C 1.33642 * 126.03857 * 89.71545 * 10 9 8 12 12 N 1.31780 * 114.49786 * 179.78775 * 11 10 9 13 13 C 1.29027 * 117.12590 * 0.52267 * 12 11 10 14 14 S 1.70975 * 110.16686 * 359.71210 * 13 12 11 15 15 C 1.34772 * 120.00241 * 179.97438 * 2 1 3 16 16 O 1.21285 * 120.00199 * 179.97438 * 15 2 1 17 17 C 1.50703 * 119.99881 * 0.02562 * 15 2 1 18 18 S 1.81006 * 109.47056 * 179.97438 * 17 15 2 19 19 C 1.76202 * 99.99723 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00345 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99651 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00265 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99665 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47201 * 89.99765 * 23 21 19 25 25 H 1.48509 * 109.46833 * 209.99394 * 23 21 19 26 26 H 1.48501 * 109.47295 * 329.99311 * 23 21 19 27 27 H 1.08997 * 109.46865 * 90.00448 * 1 2 3 28 28 H 1.09002 * 109.46716 * 210.00387 * 1 2 3 29 29 H 1.09002 * 109.46868 * 329.99928 * 1 2 3 30 30 H 1.08998 * 109.47636 * 329.99800 * 3 2 1 31 31 H 1.09010 * 109.46808 * 209.99662 * 3 2 1 32 32 H 0.96695 * 113.99730 * 60.00759 * 6 4 3 33 33 H 1.08995 * 109.47319 * 59.99998 * 7 4 3 34 34 H 1.09003 * 109.47435 * 299.99322 * 7 4 3 35 35 H 1.00902 * 111.00190 * 56.03777 * 8 7 4 36 36 H 1.09002 * 109.47043 * 299.99792 * 9 8 7 37 37 H 1.09001 * 109.47354 * 59.99854 * 9 8 7 38 38 H 1.08001 * 122.74884 * 359.97348 * 11 10 9 39 39 H 1.08003 * 124.91367 * 179.68248 * 13 12 11 40 40 H 1.09003 * 109.46790 * 299.99556 * 17 15 2 41 41 H 1.08998 * 109.47267 * 59.99904 * 17 15 2 42 42 H 0.97000 * 120.00204 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 1 1.5062 1.7550 1.9816 6 8 3.3209 0.7725 2.0814 7 6 3.1060 3.0939 1.4443 8 7 3.3514 3.5177 2.8293 9 6 3.9791 4.8452 2.8702 10 6 4.2144 5.2456 4.3039 11 6 5.3119 4.9889 5.0219 12 7 5.2775 5.4494 6.2562 13 6 4.2079 6.0712 6.6225 14 16 3.0880 6.1283 5.3318 15 6 2.1389 -1.1671 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5617 -3.8480 0.0005 19 6 1.4416 -5.2082 -0.0003 20 1 0.3763 -5.0305 -0.0001 21 6 1.9284 -6.5080 0.0001 22 7 3.2267 -6.7246 0.0004 23 14 0.7409 -7.9500 0.0000 24 1 0.4265 -8.3323 -1.4001 25 1 1.3622 -9.1029 0.7003 26 1 -0.5099 -7.5613 0.6998 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0284 -0.5138 31 1 3.1500 1.1384 -0.5138 32 1 4.1836 0.6812 1.6543 33 1 2.4436 3.8092 0.9570 34 1 4.0524 3.0494 0.9053 35 1 3.9107 2.8375 3.3219 36 1 4.9313 4.8134 2.3405 37 1 3.3222 5.5726 2.3933 38 1 6.1589 4.4510 4.6224 39 1 4.0436 6.4939 7.6027 40 1 0.7585 -2.5298 0.8904 41 1 0.7591 -2.5302 -0.8897 42 1 3.5669 -7.6330 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284385973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:58 Heat of formation + Delta-G solvation = -61.328506 kcal Electronic energy + Delta-G solvation = -24465.028734 eV Core-core repulsion = 20697.364662 eV Total energy + Delta-G solvation = -3767.664072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91861 -40.58558 -38.85309 -36.65987 -36.05405 -34.58518 -32.67861 -31.61365 -29.90701 -28.04757 -27.68476 -27.10212 -25.46708 -24.04185 -22.61110 -20.98521 -20.67851 -19.54946 -19.16544 -18.17345 -17.66728 -17.14902 -16.90820 -16.87999 -16.73348 -16.29896 -16.08939 -15.65786 -15.57386 -15.09118 -14.87351 -14.64201 -14.53118 -14.22243 -14.07086 -13.72916 -13.47148 -13.40446 -13.19801 -13.12802 -12.95617 -12.89055 -12.66925 -12.51255 -12.18825 -11.98985 -11.71303 -11.23778 -11.14179 -10.77921 -10.59850 -10.28815 -10.25768 -9.93452 -9.54411 -9.41480 -8.65389 -8.34649 -6.12072 -0.26011 0.45976 0.82962 1.27247 1.41932 1.46664 1.57059 1.67987 1.84442 2.17057 2.28481 2.99184 3.11568 3.29296 3.47799 3.57909 3.79564 3.87847 3.92616 4.14154 4.17258 4.20864 4.24321 4.36708 4.38103 4.44780 4.49451 4.55694 4.62303 4.71193 4.78529 4.80163 4.94879 5.13783 5.17032 5.41304 5.58809 5.92989 6.19464 6.26032 6.32173 6.74730 6.80189 7.06478 7.24432 8.74511 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.001773 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.283071 B =15791.232788 C =16359.063201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.086 3.914 4 C 0.096 3.904 5 H 0.100 0.900 6 O -0.573 6.573 7 C 0.039 3.961 8 N -0.690 5.690 9 C 0.139 3.861 10 C -0.222 4.222 11 C 0.019 3.981 12 N -0.508 5.508 13 C 0.006 3.994 14 S 0.170 5.830 15 C 0.535 3.465 16 O -0.555 6.555 17 C -0.125 4.125 18 S -0.148 6.148 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.259 1.259 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.377 0.623 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.345 0.655 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.177 0.823 39 H 0.224 0.776 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 30.911 5.059 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.037 4.037 4 C 0.036 3.964 5 H 0.118 0.882 6 O -0.379 6.379 7 C -0.091 4.091 8 N -0.322 5.322 9 C 0.008 3.992 10 C -0.344 4.344 11 C -0.133 4.133 12 N -0.222 5.222 13 C -0.290 4.290 14 S 0.423 5.577 15 C 0.323 3.677 16 O -0.432 6.432 17 C -0.276 4.276 18 S 0.079 5.921 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.183 1.183 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.090 0.910 32 H 0.225 0.775 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.163 0.837 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.194 0.806 39 H 0.240 0.760 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.837 31.378 5.844 32.447 hybrid contribution 0.532 -1.770 -0.762 1.999 sum -5.306 29.608 5.082 30.506 Atomic orbital electron populations 1.22070 0.77273 1.04511 1.03259 1.47682 1.08187 1.04686 1.73633 1.22287 0.98740 0.85262 0.97459 1.22431 0.94201 0.87047 0.92761 0.88201 1.86608 1.30070 1.64134 1.57074 1.22544 1.00639 0.96545 0.89350 1.60432 1.53069 1.03676 1.15056 1.20278 0.99252 0.91616 0.88065 1.26071 0.97785 1.07849 1.02693 1.21970 0.99976 1.02449 0.88920 1.66344 1.26087 1.12784 1.17019 1.28924 0.92192 1.02125 1.05787 1.83921 1.19943 1.49752 1.04112 1.19929 0.87349 0.85244 0.75199 1.90618 1.15234 1.87315 1.50066 1.23375 1.02781 0.95716 1.05734 1.85493 1.12529 0.97107 1.96977 1.23204 0.94632 0.92824 1.58847 0.90125 1.26131 0.97625 1.01679 0.93768 1.70180 1.14073 1.22449 1.48010 0.84961 0.77883 0.76334 0.78847 1.19168 1.20281 1.18265 0.90889 0.91496 0.88124 0.85855 0.90995 0.77491 0.87653 0.93903 0.83655 0.92004 0.88420 0.80589 0.75986 0.88298 0.87888 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.24 127.77 1.31 2.51 16 2 N -0.61 -15.14 2.86 -846.74 -2.42 -17.56 16 3 C 0.09 1.57 5.11 86.38 0.44 2.01 16 4 C 0.10 1.74 3.48 30.59 0.11 1.85 16 5 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 6 O -0.57 -15.47 11.54 -141.57 -1.63 -17.10 16 7 C 0.04 0.48 5.39 86.30 0.47 0.94 16 8 N -0.69 -10.10 6.49 -517.92 -3.36 -13.47 16 9 C 0.14 1.60 6.22 85.56 0.53 2.13 16 10 C -0.22 -3.24 6.11 24.64 0.15 -3.09 16 11 C 0.02 0.33 11.25 83.66 0.94 1.27 16 12 N -0.51 -9.97 10.54 -203.74 -2.15 -12.12 16 13 C 0.01 0.09 12.23 130.65 1.60 1.68 16 14 S 0.17 2.06 23.22 -56.49 -1.31 0.75 16 15 C 0.54 19.84 7.32 87.66 0.64 20.48 16 16 O -0.55 -24.60 14.42 4.36 0.06 -24.53 16 17 C -0.12 -5.12 4.71 71.24 0.34 -4.78 16 18 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 19 C -0.55 -31.74 9.50 67.95 0.65 -31.10 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 23 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.28 6.44 -2.39 -0.02 1.26 16 29 H 0.10 1.07 8.07 -2.39 -0.02 1.05 16 30 H 0.12 1.25 8.07 -2.39 -0.02 1.23 16 31 H 0.07 1.59 7.42 -2.38 -0.02 1.57 16 32 H 0.38 9.73 8.75 -74.06 -0.65 9.09 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.34 6.24 8.11 -89.69 -0.73 5.51 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.22 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.10 3.81 7.40 -2.39 -0.02 3.79 16 41 H 0.10 3.83 8.11 -2.40 -0.02 3.81 16 42 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -81.76 384.25 -2.35 -84.10 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.32 Total: 24.47 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 7.63 Total: -4.89 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -7.64 Total: -99.35 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.57 Total: -41.64 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -2.47 Total: -8.78 kcal Total: -81.76 -2.35 -84.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284385973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.775 kcal (2) G-P(sol) polarization free energy of solvation -81.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds