Wall clock time and date at job start Wed Apr 1 2020 04:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00442 * 3 2 1 5 5 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 6 6 O 1.42900 * 109.47041 * 299.99263 * 4 3 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 8 8 N 1.46896 * 109.47098 * 185.00074 * 7 4 3 9 9 C 1.46903 * 111.00046 * 179.97438 * 8 7 4 10 10 C 1.50701 * 109.46999 * 179.97438 * 9 8 7 11 11 C 1.33636 * 126.04051 * 89.99933 * 10 9 8 12 12 N 1.31785 * 114.50192 * 179.97438 * 11 10 9 13 13 C 1.29026 * 117.12522 * 0.02562 * 12 11 10 14 14 S 1.70979 * 110.16398 * 359.71956 * 13 12 11 15 15 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 16 16 O 1.21285 * 119.99996 * 179.97438 * 15 2 1 17 17 C 1.50698 * 120.00318 * 0.02562 * 15 2 1 18 18 S 1.81001 * 109.47250 * 179.97438 * 17 15 2 19 19 C 1.76202 * 99.99891 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99802 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47182 * 90.00392 * 23 21 19 25 25 H 1.48504 * 109.46620 * 210.00114 * 23 21 19 26 26 H 1.48500 * 109.47275 * 329.99897 * 23 21 19 27 27 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 28 28 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 29 29 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 30 30 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 31 31 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 32 32 H 0.96698 * 114.00516 * 300.00983 * 6 4 3 33 33 H 1.09008 * 109.46864 * 304.99696 * 7 4 3 34 34 H 1.09000 * 109.47679 * 64.99728 * 7 4 3 35 35 H 1.00904 * 110.99715 * 303.94762 * 8 7 4 36 36 H 1.08991 * 109.47170 * 299.99552 * 9 8 7 37 37 H 1.09001 * 109.46877 * 59.99944 * 9 8 7 38 38 H 1.07993 * 122.74941 * 0.02562 * 11 10 9 39 39 H 1.08004 * 124.91485 * 179.97438 * 13 12 11 40 40 H 1.09006 * 109.47054 * 299.99977 * 17 15 2 41 41 H 1.09003 * 109.47164 * 59.99309 * 17 15 2 42 42 H 0.96995 * 119.99591 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0415 0.9507 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2168 3.0357 1.4425 8 7 3.5663 3.3994 2.8222 9 6 4.3034 4.6695 2.8612 10 6 4.6433 5.0093 4.2895 11 6 5.7530 4.6484 4.9409 12 7 5.8170 5.0714 6.1874 13 6 4.8229 5.7685 6.6239 14 16 3.6512 5.9591 5.3933 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3855 -2.4723 -0.0017 18 16 2.5617 -3.8480 -0.0029 19 6 1.4416 -5.2082 -0.0034 20 1 0.3764 -5.0305 -0.0033 21 6 1.9284 -6.5081 -0.0048 22 7 3.2268 -6.7246 -0.0054 23 14 0.7409 -7.9501 -0.0060 24 1 0.4260 -8.3308 -1.4064 25 1 1.3626 -9.1037 0.6927 26 1 -0.5095 -7.5622 0.6948 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6083 2.0284 -0.5138 31 1 3.1498 1.1384 -0.5139 32 1 0.6266 2.5438 1.7127 33 1 4.1276 2.9299 0.8529 34 1 2.5915 3.8159 1.0084 35 1 2.7434 3.4405 3.4047 36 1 5.2216 4.5747 2.2816 37 1 3.6859 5.4611 2.4368 38 1 6.5336 4.0592 4.4831 39 1 4.7443 6.1764 7.6209 40 1 0.7585 -2.5307 0.8881 41 1 0.7591 -2.5294 -0.8919 42 1 3.5669 -7.6330 -0.0061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284386008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:02 Heat of formation + Delta-G solvation = -32.031767 kcal Electronic energy + Delta-G solvation = -24380.492503 eV Core-core repulsion = 20614.098834 eV Total energy + Delta-G solvation = -3766.393670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01099 -39.73249 -38.10328 -36.02157 -34.88064 -32.41172 -32.05614 -30.62838 -28.81875 -27.23724 -26.24788 -25.50069 -24.69414 -23.38295 -22.00591 -20.49916 -19.33087 -18.47317 -17.68798 -17.16808 -16.80248 -16.37390 -16.04651 -15.68283 -15.49718 -15.10958 -14.78769 -14.62665 -14.41880 -14.30814 -14.16422 -13.88411 -13.41967 -13.03097 -12.87775 -12.68239 -12.55250 -12.49419 -12.28990 -11.96168 -11.75766 -11.61627 -11.25531 -11.05057 -11.00719 -10.74645 -10.55687 -10.04235 -9.79145 -9.75440 -9.37560 -9.34040 -9.04942 -8.86885 -8.46458 -8.20712 -6.48019 -6.19877 -3.90261 0.29482 0.94632 1.33194 2.47878 2.90056 3.05331 3.23439 3.26685 3.31446 3.58275 3.78820 3.98951 4.16204 4.22011 4.40091 4.53468 4.67076 4.75859 4.87624 4.90761 4.93196 5.11723 5.14227 5.14972 5.16664 5.30691 5.37110 5.44855 5.56158 5.67074 5.74293 5.78934 5.91522 5.95799 6.16105 6.44828 6.61449 6.91367 7.32727 7.37294 7.51888 7.61352 8.36940 8.55387 9.25358 10.87569 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.001797 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.386761 B =15576.025080 C =16297.196841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.617 5.617 3 C 0.090 3.910 4 C 0.091 3.909 5 H 0.116 0.884 6 O -0.552 6.552 7 C 0.032 3.968 8 N -0.678 5.678 9 C 0.138 3.862 10 C -0.216 4.216 11 C 0.053 3.947 12 N -0.471 5.471 13 C 0.021 3.979 14 S 0.112 5.888 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.149 4.149 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.364 0.636 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.349 0.651 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.178 0.822 39 H 0.199 0.801 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 29.982 5.616 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.352 5.352 3 C -0.035 4.035 4 C 0.030 3.970 5 H 0.134 0.866 6 O -0.356 6.356 7 C -0.098 4.098 8 N -0.311 5.311 9 C 0.007 3.993 10 C -0.338 4.338 11 C -0.098 4.098 12 N -0.184 5.184 13 C -0.277 4.277 14 S 0.364 5.636 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.210 0.790 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.169 0.831 36 H 0.114 0.886 37 H 0.061 0.939 38 H 0.195 0.805 39 H 0.215 0.785 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.085 29.395 6.350 30.146 hybrid contribution -2.484 -0.316 -0.808 2.631 sum -4.569 29.079 5.541 29.953 Atomic orbital electron populations 1.21750 0.79453 1.03466 1.01150 1.47672 1.06867 1.05103 1.75577 1.21972 0.99053 0.85973 0.96481 1.22522 0.84586 0.96366 0.93489 0.86589 1.86722 1.29082 1.63208 1.56574 1.22625 1.00584 0.96608 0.89978 1.60386 1.29321 1.31031 1.10364 1.20253 0.99751 0.90437 0.88907 1.25882 0.99156 1.06816 1.01905 1.21831 0.98455 1.00710 0.88836 1.66353 1.26402 1.11489 1.14127 1.28414 0.92968 1.01864 1.04443 1.84037 1.24931 1.49034 1.05597 1.20368 0.87937 0.84621 0.74935 1.90694 1.13706 1.86807 1.47851 1.23546 1.04546 0.97187 1.04703 1.85387 1.08075 0.93350 1.96697 1.22859 0.94308 0.92217 1.58901 0.90955 1.24994 0.95675 0.98375 0.94570 1.70018 1.11728 1.21639 1.46877 0.86170 0.80288 0.80735 0.78315 1.20295 1.20751 1.19692 0.93109 0.90688 0.91244 0.90720 0.88767 0.79017 0.89416 0.94785 0.83135 0.88607 0.93943 0.80457 0.78453 0.89192 0.89350 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 9.98 59.85 0.60 1.46 16 2 N -0.62 -8.34 2.80 -181.58 -0.51 -8.85 16 3 C 0.09 0.94 5.10 -4.04 -0.02 0.92 16 4 C 0.09 0.91 3.48 -26.73 -0.09 0.82 16 5 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 6 O -0.55 -5.15 11.58 -35.23 -0.41 -5.55 16 7 C 0.03 0.24 5.36 -3.83 -0.02 0.22 16 8 N -0.68 -5.68 6.49 -115.06 -0.75 -6.43 16 9 C 0.14 0.94 6.22 -4.97 -0.03 0.91 16 10 C -0.22 -1.72 6.11 -35.92 -0.22 -1.94 16 11 C 0.05 0.50 11.25 -19.18 -0.22 0.28 16 12 N -0.47 -4.76 10.54 -15.75 -0.17 -4.92 16 13 C 0.02 0.15 12.23 51.58 0.63 0.78 16 14 S 0.11 0.73 23.22 -107.50 -2.50 -1.77 16 15 C 0.53 10.11 7.69 -10.99 -0.08 10.02 16 16 O -0.52 -11.64 15.44 5.55 0.09 -11.56 16 17 C -0.15 -3.08 4.71 36.00 0.17 -2.91 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 23 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 29 H 0.07 0.52 6.88 -51.93 -0.36 0.17 16 30 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 31 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 32 H 0.36 1.86 8.79 45.56 0.40 2.26 16 33 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.35 3.01 8.28 -39.29 -0.33 2.68 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.09 1.75 7.40 -51.91 -0.38 1.36 16 41 H 0.09 1.68 8.11 -51.91 -0.42 1.26 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -36.86 384.33 -9.19 -46.05 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.15 Total: 2.73 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 0.91 Total: -2.48 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.69 Total: -45.82 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.32 Total: -17.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -4.71 Total: -5.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.86 -9.19 -46.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284386008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.014 kcal (2) G-P(sol) polarization free energy of solvation -36.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds